Wall clock time and date at job start Tue Mar 31 2020 18:32:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17397 * 1 3 3 C 1.47202 * 179.97438 * 2 1 4 4 N 1.46900 * 109.46878 * 246.32427 * 3 2 1 5 5 C 1.46849 * 111.00032 * 294.21315 * 4 3 2 6 6 C 1.53039 * 109.52506 * 174.16162 * 5 4 3 7 7 C 1.53122 * 109.27942 * 59.17795 * 6 5 4 8 8 C 1.50697 * 109.52414 * 182.43864 * 7 6 5 9 9 O 1.21284 * 119.99553 * 97.57361 * 8 7 6 10 10 N 1.34772 * 120.00283 * 277.57873 * 8 7 6 11 11 C 1.46499 * 119.99886 * 186.21217 * 10 8 7 12 12 C 1.52997 * 109.47132 * 84.35208 * 11 10 8 13 13 C 1.46493 * 119.99813 * 6.21191 * 10 8 7 14 14 H 1.08994 * 110.89494 * 357.97447 * 13 10 8 15 15 C 1.55162 * 111.00398 * 121.85536 * 13 10 8 16 16 C 1.54323 * 102.94576 * 153.57467 * 15 13 10 17 17 N 1.47025 * 107.26919 * 337.80699 * 16 15 13 18 18 C 1.36939 * 125.64745 * 178.97165 * 17 16 15 19 19 H 1.08006 * 119.99767 * 179.97438 * 18 17 16 20 20 C 1.38812 * 120.00150 * 359.97438 * 18 17 16 21 21 N 1.31616 * 120.00010 * 359.97438 * 20 18 17 22 22 Si 1.86802 * 120.00140 * 179.97438 * 20 18 17 23 23 H 1.48501 * 109.47009 * 89.99575 * 22 20 18 24 24 H 1.48493 * 109.47161 * 210.00010 * 22 20 18 25 25 H 1.48508 * 109.47017 * 329.99913 * 22 20 18 26 26 C 1.47465 * 108.72354 * 358.97532 * 17 16 15 27 27 C 1.53120 * 109.16031 * 302.35031 * 7 6 5 28 28 C 1.46848 * 111.00318 * 170.00426 * 4 3 2 29 29 H 4.40887 * 5.52079 * 179.97438 * 4 1 2 30 30 H 1.09000 * 109.47515 * 6.32354 * 3 2 1 31 31 H 1.09005 * 109.46684 * 126.33164 * 3 2 1 32 32 H 1.09006 * 109.46681 * 294.17780 * 5 4 3 33 33 H 1.08996 * 109.46353 * 54.14414 * 5 4 3 34 34 H 1.09000 * 109.50142 * 299.23546 * 6 5 4 35 35 H 1.08997 * 109.50200 * 179.11855 * 6 5 4 36 36 H 1.08999 * 109.51808 * 62.24806 * 7 6 5 37 37 H 1.09004 * 109.47125 * 204.34913 * 11 10 8 38 38 H 1.08997 * 109.47342 * 324.35252 * 11 10 8 39 39 H 1.09000 * 109.47405 * 64.85555 * 12 11 10 40 40 H 1.08991 * 109.47448 * 184.85805 * 12 11 10 41 41 H 1.09003 * 109.47125 * 304.85839 * 12 11 10 42 42 H 1.08997 * 110.72022 * 271.94061 * 15 13 10 43 43 H 1.08999 * 110.71957 * 35.03208 * 15 13 10 44 44 H 1.09000 * 109.88617 * 97.22231 * 16 15 13 45 45 H 1.09003 * 109.88565 * 218.24127 * 16 15 13 46 46 H 0.96990 * 120.00246 * 180.02562 * 21 20 18 47 47 H 1.08997 * 110.35149 * 265.24957 * 26 17 16 48 48 H 1.08999 * 110.40566 * 142.91505 * 26 17 16 49 49 H 1.09001 * 109.49848 * 297.70900 * 27 7 6 50 50 H 1.09000 * 109.53367 * 177.61350 * 27 7 6 51 51 H 1.09003 * 109.45936 * 305.85941 * 28 4 3 52 52 H 1.09008 * 109.46116 * 65.83221 * 28 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1354 0.5570 1.2684 5 6 2.7800 1.9765 1.3924 6 6 3.1754 2.4833 2.7812 7 6 4.6824 2.2962 2.9776 8 6 5.0681 2.7381 4.3657 9 8 5.1894 1.9184 5.2513 10 7 5.2782 4.0443 4.6231 11 6 5.7843 4.4604 5.9334 12 6 7.3100 4.3480 5.9500 13 6 5.0005 5.0478 3.5926 14 1 4.6660 4.5747 2.6695 15 6 3.9620 6.0863 4.0932 16 6 4.2992 7.3412 3.2608 17 7 5.6918 7.2045 2.8096 18 6 6.3685 8.1007 2.0259 19 1 7.3943 7.9082 1.7479 20 6 5.7361 9.2564 1.5887 21 7 4.4859 9.4907 1.9270 22 14 6.6593 10.4793 0.5202 23 1 6.4674 10.1302 -0.9104 24 1 6.1384 11.8472 0.7702 25 1 8.1062 10.4323 0.8513 26 6 6.2397 5.9426 3.3406 27 6 5.0330 0.8168 2.7955 28 6 4.5838 0.3583 1.4064 29 1 -1.0501 0.0001 -0.0003 30 1 3.0099 -1.0206 -0.1132 31 1 3.0090 0.6097 -0.8279 32 1 3.3089 2.5511 0.6319 33 1 1.7053 2.0952 1.2549 34 1 2.6363 1.9185 3.5418 35 1 2.9257 3.5408 2.8673 36 1 5.2223 2.8917 2.2415 37 1 5.4941 5.4938 6.1235 38 1 5.3641 3.8169 6.7063 39 1 7.7343 5.0547 5.2369 40 1 7.6802 4.5744 6.9499 41 1 7.6027 3.3346 5.6751 42 1 2.9470 5.7473 3.8860 43 1 4.0925 6.2798 5.1579 44 1 3.6349 7.4040 2.3989 45 1 4.1927 8.2343 3.8767 46 1 4.0439 10.2981 1.6213 47 1 6.7729 6.1237 4.2738 48 1 6.9008 5.4777 2.6092 49 1 4.5232 0.2258 3.5564 50 1 6.1105 0.6831 2.8922 51 1 4.8191 -0.6983 1.2788 52 1 5.1043 0.9407 0.6459 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001034045837.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:32:04 Heat of formation + Delta-G solvation = 36.045677 kcal Electronic energy + Delta-G solvation = -30212.366046 eV Core-core repulsion = 26406.453038 eV Total energy + Delta-G solvation = -3805.913009 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 333.216 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.69573 -39.80031 -38.96240 -36.40627 -35.59444 -34.03092 -33.28600 -31.97404 -31.72229 -30.79171 -28.92933 -28.27609 -26.37950 -25.33386 -24.21634 -23.65043 -22.29149 -21.96706 -20.97525 -19.76338 -19.01073 -18.81518 -18.53929 -17.30320 -16.87549 -16.69142 -16.25722 -15.98350 -15.88775 -15.64265 -15.59019 -14.91298 -14.81266 -14.56311 -14.28465 -14.09817 -13.98888 -13.93862 -13.72987 -13.65933 -13.40644 -13.00715 -12.97074 -12.88023 -12.69991 -12.51768 -12.31334 -12.15561 -12.03049 -12.01558 -11.88709 -11.81459 -11.69664 -11.52359 -11.44761 -11.28298 -11.02894 -10.68693 -10.62851 -9.67508 -9.34601 -8.87395 -7.83361 -5.18982 1.48656 1.49294 1.56898 1.57942 1.78055 1.93270 1.96115 2.51634 3.07167 3.33623 3.36660 3.53817 3.69560 3.74988 3.78814 3.85676 3.91366 4.06541 4.15756 4.20048 4.23648 4.35289 4.40327 4.41780 4.48979 4.53147 4.56626 4.58811 4.64861 4.66817 4.70963 4.84662 4.85311 4.88831 4.91014 4.94895 5.02405 5.08350 5.09879 5.14450 5.18652 5.34617 5.38187 5.47452 5.58514 5.64933 5.77792 6.00400 6.07847 6.19798 6.41430 6.74715 7.11511 7.15019 7.77910 8.41021 9.26418 Molecular weight = 333.22amu Principal moments of inertia in cm(-1) A = 0.010190 B = 0.003505 C = 0.002874 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2747.102396 B = 7985.687492 C = 9740.953019 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.212 4.212 3 C 0.161 3.839 4 N -0.547 5.547 5 C 0.062 3.938 6 C -0.099 4.099 7 C -0.107 4.107 8 C 0.524 3.476 9 O -0.572 6.572 10 N -0.594 5.594 11 C 0.107 3.893 12 C -0.162 4.162 13 C 0.135 3.865 14 H 0.110 0.890 15 C -0.139 4.139 16 C 0.190 3.810 17 N -0.622 5.622 18 C -0.240 4.240 19 H 0.082 0.918 20 C -0.061 4.061 21 N -0.948 5.948 22 Si 0.974 3.026 23 H -0.286 1.286 24 H -0.297 1.297 25 H -0.270 1.270 26 C 0.124 3.876 27 C -0.091 4.091 28 C 0.061 3.939 29 H 0.241 0.759 30 H 0.114 0.886 31 H 0.066 0.934 32 H 0.042 0.958 33 H 0.076 0.924 34 H 0.066 0.934 35 H 0.075 0.925 36 H 0.097 0.903 37 H 0.083 0.917 38 H 0.076 0.924 39 H 0.057 0.943 40 H 0.080 0.920 41 H 0.047 0.953 42 H 0.083 0.917 43 H 0.073 0.927 44 H 0.018 0.982 45 H 0.009 0.991 46 H 0.247 0.753 47 H 0.038 0.962 48 H 0.043 0.957 49 H 0.066 0.934 50 H 0.075 0.925 51 H 0.099 0.901 52 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.478 -18.451 -0.457 18.622 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.212 4.212 3 C 0.035 3.965 4 N -0.272 5.272 5 C -0.065 4.065 6 C -0.137 4.137 7 C -0.128 4.128 8 C 0.313 3.687 9 O -0.452 6.452 10 N -0.325 5.325 11 C -0.015 4.015 12 C -0.220 4.220 13 C 0.031 3.969 14 H 0.128 0.872 15 C -0.178 4.178 16 C 0.064 3.936 17 N -0.349 5.349 18 C -0.369 4.369 19 H 0.100 0.900 20 C -0.254 4.254 21 N -0.597 5.597 22 Si 0.803 3.197 23 H -0.213 1.213 24 H -0.223 1.223 25 H -0.195 1.195 26 C -0.002 4.002 27 C -0.129 4.129 28 C -0.066 4.066 29 H 0.257 0.743 30 H 0.132 0.868 31 H 0.084 0.916 32 H 0.060 0.940 33 H 0.094 0.906 34 H 0.085 0.915 35 H 0.093 0.907 36 H 0.115 0.885 37 H 0.101 0.899 38 H 0.095 0.905 39 H 0.076 0.924 40 H 0.099 0.901 41 H 0.066 0.934 42 H 0.102 0.898 43 H 0.092 0.908 44 H 0.036 0.964 45 H 0.027 0.973 46 H 0.056 0.944 47 H 0.056 0.944 48 H 0.061 0.939 49 H 0.085 0.915 50 H 0.093 0.907 51 H 0.117 0.883 52 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -2.624 -18.936 0.317 19.120 hybrid contribution 0.458 1.730 -1.074 2.087 sum -2.166 -17.206 -0.756 17.359 Atomic orbital electron populations 1.25664 0.96866 1.00088 0.99022 1.23348 0.95130 1.01262 1.01481 1.19089 0.84784 1.02041 0.90634 1.61890 1.14905 1.16569 1.33843 1.22017 1.01052 0.87586 0.95891 1.21506 0.92801 1.01525 0.97890 1.21447 0.98625 0.99384 0.93365 1.20908 0.75481 0.81352 0.90918 1.90639 1.53472 1.52611 1.48451 1.47979 1.64234 1.05818 1.14432 1.21447 0.94838 1.00978 0.84263 1.22183 0.95232 1.01534 1.03053 1.22310 0.95621 0.88101 0.90906 0.87218 1.23111 0.99176 0.95311 1.00219 1.20853 0.85096 0.93039 0.94579 1.44640 1.10751 1.20622 1.58898 1.19402 0.95836 0.98958 1.22695 0.90004 1.25566 0.97256 1.00153 1.02437 1.70150 1.11938 1.27287 1.50355 0.85147 0.78079 0.78004 0.78505 1.21259 1.22320 1.19542 1.22078 0.94705 0.86194 0.97218 1.21364 1.01304 0.92690 0.97535 1.22131 0.85923 1.02569 0.96011 0.74255 0.86807 0.91617 0.94014 0.90592 0.91527 0.90689 0.88484 0.89906 0.90527 0.92443 0.90130 0.93391 0.89823 0.90827 0.96369 0.97321 0.94411 0.94440 0.93886 0.91509 0.90666 0.88270 0.93506 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -3.42 19.25 74.32 1.43 -1.99 16 2 C -0.21 -4.12 12.34 31.13 0.38 -3.73 16 3 C 0.16 2.63 5.46 84.50 0.46 3.09 16 4 N -0.55 -10.49 4.63 -907.43 -4.21 -14.70 16 5 C 0.06 1.30 5.30 86.33 0.46 1.76 16 6 C -0.10 -2.25 5.10 30.65 0.16 -2.10 16 7 C -0.11 -2.51 1.71 -11.46 -0.02 -2.53 16 8 C 0.52 15.04 6.77 87.66 0.59 15.63 16 9 O -0.57 -19.52 15.65 -3.04 -0.05 -19.56 16 10 N -0.59 -16.76 2.53 -790.15 -2.00 -18.76 16 11 C 0.11 2.86 5.21 86.38 0.45 3.31 16 12 C -0.16 -4.03 9.95 71.98 0.72 -3.32 16 13 C 0.14 4.18 2.74 46.39 0.13 4.31 16 14 H 0.11 3.23 4.81 -2.39 -0.01 3.22 16 15 C -0.14 -4.68 6.49 31.78 0.21 -4.47 16 16 C 0.19 8.77 5.37 86.73 0.47 9.23 16 17 N -0.62 -29.97 3.40 -691.86 -2.35 -32.32 16 18 C -0.24 -12.84 10.28 84.03 0.86 -11.98 16 19 H 0.08 4.20 7.83 -2.91 -0.02 4.17 16 20 C -0.06 -3.33 5.49 84.86 0.47 -2.87 16 21 N -0.95 -55.01 10.31 21.65 0.22 -54.78 16 22 Si 0.97 44.33 29.55 68.60 2.03 46.36 16 23 H -0.29 -12.77 7.11 99.48 0.71 -12.07 16 24 H -0.30 -13.70 7.11 99.48 0.71 -12.99 16 25 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16 26 C 0.12 4.65 6.52 86.85 0.57 5.21 16 27 C -0.09 -1.91 4.92 30.64 0.15 -1.76 16 28 C 0.06 1.01 5.46 86.32 0.47 1.49 16 29 H 0.24 2.43 7.80 -4.41 -0.03 2.39 16 30 H 0.11 1.43 7.99 -2.39 -0.02 1.41 16 31 H 0.07 0.98 8.12 -2.38 -0.02 0.96 16 32 H 0.04 0.86 8.14 -2.38 -0.02 0.84 16 33 H 0.08 1.64 7.11 -2.39 -0.02 1.63 16 34 H 0.07 1.67 8.14 -2.39 -0.02 1.65 16 35 H 0.07 1.74 6.83 -2.39 -0.02 1.72 16 36 H 0.10 2.22 6.79 -2.39 -0.02 2.20 16 37 H 0.08 2.20 6.32 -2.38 -0.02 2.18 16 38 H 0.08 2.07 7.52 -2.39 -0.02 2.06 16 39 H 0.06 1.53 5.85 -2.39 -0.01 1.52 16 40 H 0.08 1.69 8.14 -2.39 -0.02 1.67 16 41 H 0.05 1.26 8.14 -2.39 -0.02 1.24 16 42 H 0.08 2.50 8.14 -2.39 -0.02 2.48 16 43 H 0.07 2.35 6.34 -2.39 -0.02 2.34 16 44 H 0.02 0.94 7.38 -2.39 -0.02 0.92 16 45 H 0.01 0.45 7.51 -2.39 -0.02 0.44 16 46 H 0.25 14.00 8.31 -92.72 -0.77 13.23 16 47 H 0.04 1.39 5.05 -2.39 -0.01 1.38 16 48 H 0.04 1.59 8.14 -2.39 -0.02 1.57 16 49 H 0.07 1.66 7.80 -2.39 -0.02 1.64 16 50 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 51 H 0.10 1.30 8.02 -2.39 -0.02 1.28 16 52 H 0.05 0.73 8.14 -2.38 -0.02 0.71 16 Total: -1.00 -66.69 398.27 2.49 -64.20 By element: Atomic # 1 Polarization: 19.40 SS G_CDS: 0.89 Total: 20.29 kcal Atomic # 6 Polarization: 1.33 SS G_CDS: 7.95 Total: 9.27 kcal Atomic # 7 Polarization: -112.23 SS G_CDS: -8.33 Total: -120.56 kcal Atomic # 8 Polarization: -19.52 SS G_CDS: -0.05 Total: -19.56 kcal Atomic # 14 Polarization: 44.33 SS G_CDS: 2.03 Total: 46.36 kcal Total: -66.69 2.49 -64.20 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034045837.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.249 kcal (2) G-P(sol) polarization free energy of solvation -66.693 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.555 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.490 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.203 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.046 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds