Wall clock time and date at job start Tue Mar 31 2020 18:32:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17402 * 1 3 3 C 1.47198 * 179.97438 * 2 1 4 4 N 1.46904 * 109.46922 * 92.33134 * 3 2 1 5 5 C 1.46853 * 110.99615 * 170.00136 * 4 3 2 6 6 C 1.53041 * 109.51804 * 185.83982 * 5 4 3 7 7 C 1.53112 * 109.27894 * 300.81597 * 6 5 4 8 8 C 1.50704 * 109.52529 * 177.56211 * 7 6 5 9 9 O 1.21283 * 119.99668 * 345.25555 * 8 7 6 10 10 N 1.34774 * 120.00383 * 165.25115 * 8 7 6 11 11 C 1.46495 * 120.00034 * 185.68491 * 10 8 7 12 12 C 1.52999 * 109.47204 * 84.40277 * 11 10 8 13 13 C 1.46503 * 119.99721 * 5.68452 * 10 8 7 14 14 H 1.09001 * 110.64341 * 2.94053 * 13 10 8 15 15 C 1.55160 * 110.71577 * 239.61010 * 13 10 8 16 16 C 1.54909 * 101.58122 * 277.13753 * 15 13 10 17 17 N 1.47430 * 104.83310 * 322.99295 * 16 15 13 18 18 C 1.36933 * 125.64824 * 204.09255 * 17 16 15 19 19 H 1.08007 * 119.99727 * 180.02562 * 18 17 16 20 20 C 1.38814 * 120.00356 * 0.04221 * 18 17 16 21 21 N 1.31621 * 119.99477 * 359.97438 * 20 18 17 22 22 Si 1.86795 * 119.99992 * 179.97438 * 20 18 17 23 23 H 1.48507 * 109.47103 * 89.99875 * 22 20 18 24 24 H 1.48506 * 109.46904 * 209.99625 * 22 20 18 25 25 H 1.48496 * 109.47388 * 330.00030 * 22 20 18 26 26 C 1.47029 * 108.70091 * 24.12590 * 17 16 15 27 27 C 1.53122 * 109.21411 * 57.62674 * 7 6 5 28 28 C 1.46841 * 110.99914 * 294.20636 * 4 3 2 29 29 H 4.40883 * 5.52123 * 179.97438 * 4 1 2 30 30 H 1.09004 * 109.47367 * 332.33237 * 3 2 1 31 31 H 1.08998 * 109.46966 * 212.32833 * 3 2 1 32 32 H 1.08999 * 109.46394 * 65.82405 * 5 4 3 33 33 H 1.09001 * 109.46208 * 305.85320 * 5 4 3 34 34 H 1.09007 * 109.49934 * 180.88045 * 6 5 4 35 35 H 1.08993 * 109.53720 * 60.78035 * 6 5 4 36 36 H 1.09002 * 109.52366 * 297.68871 * 7 6 5 37 37 H 1.09003 * 109.46869 * 204.40479 * 11 10 8 38 38 H 1.09000 * 109.47224 * 324.40081 * 11 10 8 39 39 H 1.08991 * 109.47031 * 299.99727 * 12 11 10 40 40 H 1.08995 * 109.47116 * 60.00232 * 12 11 10 41 41 H 1.09004 * 109.46628 * 179.97438 * 12 11 10 42 42 H 1.08997 * 111.00678 * 35.21527 * 15 13 10 43 43 H 1.09004 * 111.00229 * 159.06642 * 15 13 10 44 44 H 1.08999 * 110.36708 * 204.15774 * 16 15 13 45 45 H 1.09004 * 110.46202 * 81.87796 * 16 15 13 46 46 H 0.96994 * 119.99340 * 179.97438 * 21 20 18 47 47 H 1.08998 * 109.88286 * 239.52237 * 26 17 16 48 48 H 1.09001 * 109.88060 * 118.35495 * 26 17 16 49 49 H 1.09000 * 109.50250 * 62.31272 * 27 7 6 50 50 H 1.08996 * 109.50714 * 182.43703 * 27 7 6 51 51 H 1.08999 * 109.46553 * 294.17972 * 28 4 3 52 52 H 1.09000 * 109.46129 * 54.16300 * 28 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1356 0.0572 -1.3839 5 6 4.5839 0.2976 -1.4202 6 6 5.0332 0.4951 -2.8698 7 6 4.6839 -0.7550 -3.6821 8 6 5.0698 -0.5431 -5.1234 9 8 5.3204 0.5730 -5.5263 10 7 5.1363 -1.5940 -5.9647 11 6 5.6307 -1.4081 -7.3311 12 6 7.1590 -1.4793 -7.3347 13 6 4.7143 -2.9221 -5.5126 14 1 4.3274 -2.8765 -4.4946 15 6 5.8860 -3.9342 -5.6138 16 6 5.8134 -4.3458 -7.1055 17 7 4.3727 -4.3895 -7.4153 18 6 3.7937 -5.1219 -8.4170 19 1 2.7242 -5.0857 -8.5635 20 6 4.5812 -5.9111 -9.2441 21 7 5.8845 -5.9550 -9.0657 22 14 3.7912 -6.9107 -10.6101 23 1 3.7385 -6.0975 -11.8516 24 1 4.5939 -8.1359 -10.8546 25 1 2.4132 -7.2932 -10.2102 26 6 3.6607 -3.5159 -6.4711 27 6 3.1774 -1.0123 -3.5882 28 6 2.7816 -1.1645 -2.1177 29 1 -1.0500 -0.0002 0.0001 30 1 3.0098 -0.9094 0.4772 31 1 3.0089 0.8692 0.5496 32 1 5.1050 -0.5586 -0.9919 33 1 4.8183 1.1916 -0.8424 34 1 6.1107 0.6579 -2.8978 35 1 4.5233 1.3595 -3.2949 36 1 5.2255 -1.6123 -3.2823 37 1 5.2289 -2.1925 -7.9727 38 1 5.3114 -0.4349 -7.7038 39 1 7.5607 -0.6950 -6.6933 40 1 7.4783 -2.4525 -6.9621 41 1 7.5267 -1.3414 -8.3515 42 1 6.8378 -3.4541 -5.3868 43 1 5.7181 -4.7925 -4.9632 44 1 6.2625 -5.3283 -7.2502 45 1 6.3134 -3.6052 -7.7298 46 1 6.4347 -6.5067 -9.6433 47 1 2.9314 -4.0967 -5.9065 48 1 3.1596 -2.7142 -7.0136 49 1 2.6369 -0.1723 -4.0245 50 1 2.9298 -1.9256 -4.1291 51 1 3.3112 -2.0138 -1.6860 52 1 1.7069 -1.3322 -2.0466 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001034045839.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:32:09 Heat of formation + Delta-G solvation = 62.501319 kcal Electronic energy + Delta-G solvation = -30436.767908 eV Core-core repulsion = 26632.002102 eV Total energy + Delta-G solvation = -3804.765806 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 333.216 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -40.55491 -38.88314 -37.56585 -34.77993 -34.42584 -32.57227 -32.04799 -31.08289 -30.52925 -29.22067 -27.61748 -26.94245 -24.58670 -24.24406 -23.38042 -22.35710 -20.97890 -20.21773 -19.99765 -18.40282 -18.36205 -17.21216 -17.03327 -16.26960 -15.60137 -15.45499 -15.10674 -14.85688 -14.70527 -14.47374 -14.03902 -13.84099 -13.53566 -13.25440 -13.22298 -12.93998 -12.78056 -12.58673 -12.26524 -11.99082 -11.96514 -11.68220 -11.56212 -11.50086 -11.27564 -11.09558 -10.92366 -10.88120 -10.85991 -10.68927 -10.54701 -10.46948 -10.35610 -10.17023 -9.99770 -9.94057 -9.66167 -9.28072 -8.68538 -8.63759 -8.23421 -6.89398 -5.70881 -3.12913 2.45616 2.62104 2.87634 3.31230 3.36904 3.42447 3.43690 3.77031 4.14497 4.43783 4.47249 4.64932 4.70511 4.96449 4.97774 5.09696 5.13305 5.19395 5.24199 5.30503 5.38079 5.41482 5.43130 5.52769 5.56981 5.62004 5.64882 5.69639 5.72783 5.77911 5.84122 5.88626 5.94663 6.09885 6.20510 6.24823 6.27713 6.37798 6.41216 6.48445 6.56754 6.65613 6.69785 6.72138 6.79382 7.00102 7.39544 7.47447 7.57276 7.79819 7.82744 8.30155 8.48424 9.16175 9.76644 10.40217 11.32456 Molecular weight = 333.22amu Principal moments of inertia in cm(-1) A = 0.016002 B = 0.003027 C = 0.002698 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1749.344225 B = 9247.223171 C =10376.237759 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.180 4.180 3 C 0.162 3.838 4 N -0.536 5.536 5 C 0.058 3.942 6 C -0.095 4.095 7 C -0.108 4.108 8 C 0.518 3.482 9 O -0.549 6.549 10 N -0.589 5.589 11 C 0.103 3.897 12 C -0.165 4.165 13 C 0.115 3.885 14 H 0.095 0.905 15 C -0.159 4.159 16 C 0.140 3.860 17 N -0.601 5.601 18 C -0.224 4.224 19 H 0.077 0.923 20 C -0.009 4.009 21 N -0.920 5.920 22 Si 0.913 3.087 23 H -0.289 1.289 24 H -0.291 1.291 25 H -0.282 1.282 26 C 0.126 3.874 27 C -0.111 4.111 28 C 0.058 3.942 29 H 0.217 0.783 30 H 0.058 0.942 31 H 0.097 0.903 32 H 0.037 0.963 33 H 0.080 0.920 34 H 0.072 0.928 35 H 0.083 0.917 36 H 0.090 0.910 37 H 0.106 0.894 38 H 0.067 0.933 39 H 0.046 0.954 40 H 0.068 0.932 41 H 0.060 0.940 42 H 0.063 0.937 43 H 0.069 0.931 44 H 0.104 0.896 45 H 0.032 0.968 46 H 0.252 0.748 47 H 0.032 0.968 48 H 0.029 0.971 49 H 0.078 0.922 50 H 0.081 0.919 51 H 0.038 0.962 52 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.686 9.744 17.544 20.247 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.181 4.181 3 C 0.036 3.964 4 N -0.261 5.261 5 C -0.070 4.070 6 C -0.133 4.133 7 C -0.130 4.130 8 C 0.306 3.694 9 O -0.427 6.427 10 N -0.320 5.320 11 C -0.019 4.019 12 C -0.223 4.223 13 C 0.011 3.989 14 H 0.112 0.888 15 C -0.199 4.199 16 C 0.015 3.985 17 N -0.328 5.328 18 C -0.352 4.352 19 H 0.095 0.905 20 C -0.204 4.204 21 N -0.569 5.569 22 Si 0.744 3.256 23 H -0.216 1.216 24 H -0.217 1.217 25 H -0.207 1.207 26 C -0.001 4.001 27 C -0.149 4.149 28 C -0.069 4.069 29 H 0.234 0.766 30 H 0.076 0.924 31 H 0.115 0.885 32 H 0.055 0.945 33 H 0.098 0.902 34 H 0.091 0.909 35 H 0.102 0.898 36 H 0.108 0.892 37 H 0.124 0.876 38 H 0.086 0.914 39 H 0.065 0.935 40 H 0.087 0.913 41 H 0.079 0.921 42 H 0.082 0.918 43 H 0.088 0.912 44 H 0.122 0.878 45 H 0.050 0.950 46 H 0.063 0.937 47 H 0.050 0.950 48 H 0.046 0.954 49 H 0.097 0.903 50 H 0.100 0.900 51 H 0.056 0.944 52 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -2.694 10.563 16.899 20.110 hybrid contribution -0.213 -1.310 -0.362 1.376 sum -2.907 9.253 16.536 19.171 Atomic orbital electron populations 1.24908 0.95916 1.01282 0.99474 1.22821 0.94188 1.00206 1.00860 1.18982 0.85251 1.01899 0.90298 1.61899 1.14391 1.37597 1.12236 1.22135 0.86297 1.00794 0.97745 1.21395 1.01362 0.97661 0.92910 1.21388 0.98013 1.00411 0.93161 1.20490 0.77008 0.84284 0.87620 1.90648 1.50526 1.23495 1.78015 1.47981 1.62999 1.07959 1.13072 1.21623 0.94313 1.03082 0.82837 1.22228 0.96180 1.02147 1.01755 1.22399 0.96529 0.81998 0.97953 0.88766 1.23433 0.96654 0.97553 1.02244 1.22246 0.85546 1.03108 0.87559 1.44510 1.02656 1.50937 1.34697 1.19050 0.91949 1.18691 1.05512 0.90531 1.24764 0.95595 1.00431 0.99632 1.69792 1.03113 1.43609 1.40357 0.86091 0.78089 0.79513 0.81896 1.21635 1.21690 1.20730 1.21634 0.93487 0.93311 0.91652 1.21706 0.93658 1.03459 0.96097 1.22113 1.01230 0.89859 0.93724 0.76650 0.92432 0.88476 0.94478 0.90181 0.90937 0.89844 0.89195 0.87553 0.91417 0.93450 0.91308 0.92080 0.91799 0.91217 0.87809 0.95010 0.93719 0.95041 0.95351 0.90338 0.90020 0.94363 0.90204 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.72 19.25 29.55 0.57 -1.15 16 2 C -0.18 -1.74 12.34 -37.12 -0.46 -2.20 16 3 C 0.16 1.33 5.46 -6.61 -0.04 1.30 16 4 N -0.54 -5.21 4.64 -238.17 -1.10 -6.31 16 5 C 0.06 0.51 5.46 -3.83 -0.02 0.48 16 6 C -0.10 -1.05 4.83 -26.65 -0.13 -1.18 16 7 C -0.11 -1.31 1.72 -91.65 -0.16 -1.47 16 8 C 0.52 8.21 6.87 -10.98 -0.08 8.13 16 9 O -0.55 -10.34 15.59 5.55 0.09 -10.26 16 10 N -0.59 -9.65 2.44 -164.03 -0.40 -10.05 16 11 C 0.10 1.85 5.03 -4.04 -0.02 1.83 16 12 C -0.17 -2.74 9.25 37.16 0.34 -2.39 16 13 C 0.12 1.84 2.74 -66.10 -0.18 1.66 16 14 H 0.09 1.26 4.33 -51.93 -0.22 1.03 16 15 C -0.16 -2.76 6.14 -24.58 -0.15 -2.91 16 16 C 0.14 3.10 4.74 -2.53 -0.01 3.09 16 17 N -0.60 -14.25 2.89 -170.06 -0.49 -14.74 16 18 C -0.22 -5.93 10.27 -15.06 -0.15 -6.09 16 19 H 0.08 1.98 7.83 -52.48 -0.41 1.57 16 20 C -0.01 -0.23 5.49 -17.43 -0.10 -0.33 16 21 N -0.92 -25.63 10.09 55.49 0.56 -25.07 16 22 Si 0.91 21.48 29.55 -169.99 -5.02 16.46 16 23 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 24 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 25 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 26 C 0.13 2.44 6.15 -3.06 -0.02 2.42 16 27 C -0.11 -1.27 5.01 -26.64 -0.13 -1.40 16 28 C 0.06 0.58 5.30 -3.83 -0.02 0.56 16 29 H 0.22 1.19 7.80 -54.09 -0.42 0.77 16 30 H 0.06 0.41 8.12 -51.93 -0.42 -0.01 16 31 H 0.10 0.65 7.99 -51.93 -0.41 0.24 16 32 H 0.04 0.30 8.14 -51.93 -0.42 -0.13 16 33 H 0.08 0.59 8.02 -51.93 -0.42 0.18 16 34 H 0.07 0.79 8.14 -51.92 -0.42 0.37 16 35 H 0.08 1.09 7.86 -51.93 -0.41 0.68 16 36 H 0.09 1.00 7.31 -51.93 -0.38 0.62 16 37 H 0.11 2.20 5.00 -51.93 -0.26 1.94 16 38 H 0.07 1.24 7.52 -51.93 -0.39 0.85 16 39 H 0.05 0.77 8.14 -51.93 -0.42 0.34 16 40 H 0.07 1.17 4.88 -51.93 -0.25 0.92 16 41 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 42 H 0.06 1.03 6.94 -51.93 -0.36 0.67 16 43 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 44 H 0.10 2.68 5.87 -51.93 -0.31 2.37 16 45 H 0.03 0.74 4.11 -51.93 -0.21 0.52 16 46 H 0.25 6.88 8.31 -40.82 -0.34 6.54 16 47 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 48 H 0.03 0.58 7.92 -51.93 -0.41 0.16 16 49 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 50 H 0.08 0.94 5.94 -51.93 -0.31 0.63 16 51 H 0.04 0.35 8.14 -51.93 -0.42 -0.07 16 52 H 0.08 0.82 7.11 -51.93 -0.37 0.45 16 LS Contribution 390.57 15.07 5.89 5.89 Total: -1.00 -30.34 390.57 -9.73 -40.07 By element: Atomic # 1 Polarization: 12.14 SS G_CDS: -8.49 Total: 3.66 kcal Atomic # 6 Polarization: 1.11 SS G_CDS: -0.75 Total: 0.36 kcal Atomic # 7 Polarization: -54.74 SS G_CDS: -1.44 Total: -56.17 kcal Atomic # 8 Polarization: -10.34 SS G_CDS: 0.09 Total: -10.26 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.02 Total: 16.46 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -30.34 -9.73 -40.07 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034045839.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.571 kcal (2) G-P(sol) polarization free energy of solvation -30.343 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.227 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.726 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.069 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.501 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds