Wall clock time and date at job start Tue Mar 31 2020 18:32:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17402 * 1 3 3 C 1.47198 * 179.97438 * 2 1 4 4 N 1.46904 * 109.46922 * 92.33134 * 3 2 1 5 5 C 1.46853 * 110.99615 * 170.00136 * 4 3 2 6 6 C 1.53041 * 109.51804 * 185.83982 * 5 4 3 7 7 C 1.53112 * 109.27894 * 300.81597 * 6 5 4 8 8 C 1.50704 * 109.52529 * 177.56211 * 7 6 5 9 9 O 1.21283 * 119.99668 * 345.25555 * 8 7 6 10 10 N 1.34774 * 120.00383 * 165.25115 * 8 7 6 11 11 C 1.46495 * 120.00034 * 185.68491 * 10 8 7 12 12 C 1.52999 * 109.47204 * 84.40277 * 11 10 8 13 13 C 1.46503 * 119.99721 * 5.68452 * 10 8 7 14 14 H 1.09001 * 110.64341 * 2.94053 * 13 10 8 15 15 C 1.55160 * 110.71577 * 239.61010 * 13 10 8 16 16 C 1.54909 * 101.58122 * 277.13753 * 15 13 10 17 17 N 1.47430 * 104.83310 * 322.99295 * 16 15 13 18 18 C 1.36933 * 125.64824 * 204.09255 * 17 16 15 19 19 H 1.08007 * 119.99727 * 180.02562 * 18 17 16 20 20 C 1.38814 * 120.00356 * 0.04221 * 18 17 16 21 21 N 1.31621 * 119.99477 * 359.97438 * 20 18 17 22 22 Si 1.86795 * 119.99992 * 179.97438 * 20 18 17 23 23 H 1.48507 * 109.47103 * 89.99875 * 22 20 18 24 24 H 1.48506 * 109.46904 * 209.99625 * 22 20 18 25 25 H 1.48496 * 109.47388 * 330.00030 * 22 20 18 26 26 C 1.47029 * 108.70091 * 24.12590 * 17 16 15 27 27 C 1.53122 * 109.21411 * 57.62674 * 7 6 5 28 28 C 1.46841 * 110.99914 * 294.20636 * 4 3 2 29 29 H 4.40883 * 5.52123 * 179.97438 * 4 1 2 30 30 H 1.09004 * 109.47367 * 332.33237 * 3 2 1 31 31 H 1.08998 * 109.46966 * 212.32833 * 3 2 1 32 32 H 1.08999 * 109.46394 * 65.82405 * 5 4 3 33 33 H 1.09001 * 109.46208 * 305.85320 * 5 4 3 34 34 H 1.09007 * 109.49934 * 180.88045 * 6 5 4 35 35 H 1.08993 * 109.53720 * 60.78035 * 6 5 4 36 36 H 1.09002 * 109.52366 * 297.68871 * 7 6 5 37 37 H 1.09003 * 109.46869 * 204.40479 * 11 10 8 38 38 H 1.09000 * 109.47224 * 324.40081 * 11 10 8 39 39 H 1.08991 * 109.47031 * 299.99727 * 12 11 10 40 40 H 1.08995 * 109.47116 * 60.00232 * 12 11 10 41 41 H 1.09004 * 109.46628 * 179.97438 * 12 11 10 42 42 H 1.08997 * 111.00678 * 35.21527 * 15 13 10 43 43 H 1.09004 * 111.00229 * 159.06642 * 15 13 10 44 44 H 1.08999 * 110.36708 * 204.15774 * 16 15 13 45 45 H 1.09004 * 110.46202 * 81.87796 * 16 15 13 46 46 H 0.96994 * 119.99340 * 179.97438 * 21 20 18 47 47 H 1.08998 * 109.88286 * 239.52237 * 26 17 16 48 48 H 1.09001 * 109.88060 * 118.35495 * 26 17 16 49 49 H 1.09000 * 109.50250 * 62.31272 * 27 7 6 50 50 H 1.08996 * 109.50714 * 182.43703 * 27 7 6 51 51 H 1.08999 * 109.46553 * 294.17972 * 28 4 3 52 52 H 1.09000 * 109.46129 * 54.16300 * 28 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1356 0.0572 -1.3839 5 6 4.5839 0.2976 -1.4202 6 6 5.0332 0.4951 -2.8698 7 6 4.6839 -0.7550 -3.6821 8 6 5.0698 -0.5431 -5.1234 9 8 5.3204 0.5730 -5.5263 10 7 5.1363 -1.5940 -5.9647 11 6 5.6307 -1.4081 -7.3311 12 6 7.1590 -1.4793 -7.3347 13 6 4.7143 -2.9221 -5.5126 14 1 4.3274 -2.8765 -4.4946 15 6 5.8860 -3.9342 -5.6138 16 6 5.8134 -4.3458 -7.1055 17 7 4.3727 -4.3895 -7.4153 18 6 3.7937 -5.1219 -8.4170 19 1 2.7242 -5.0857 -8.5635 20 6 4.5812 -5.9111 -9.2441 21 7 5.8845 -5.9550 -9.0657 22 14 3.7912 -6.9107 -10.6101 23 1 3.7385 -6.0975 -11.8516 24 1 4.5939 -8.1359 -10.8546 25 1 2.4132 -7.2932 -10.2102 26 6 3.6607 -3.5159 -6.4711 27 6 3.1774 -1.0123 -3.5882 28 6 2.7816 -1.1645 -2.1177 29 1 -1.0500 -0.0002 0.0001 30 1 3.0098 -0.9094 0.4772 31 1 3.0089 0.8692 0.5496 32 1 5.1050 -0.5586 -0.9919 33 1 4.8183 1.1916 -0.8424 34 1 6.1107 0.6579 -2.8978 35 1 4.5233 1.3595 -3.2949 36 1 5.2255 -1.6123 -3.2823 37 1 5.2289 -2.1925 -7.9727 38 1 5.3114 -0.4349 -7.7038 39 1 7.5607 -0.6950 -6.6933 40 1 7.4783 -2.4525 -6.9621 41 1 7.5267 -1.3414 -8.3515 42 1 6.8378 -3.4541 -5.3868 43 1 5.7181 -4.7925 -4.9632 44 1 6.2625 -5.3283 -7.2502 45 1 6.3134 -3.6052 -7.7298 46 1 6.4347 -6.5067 -9.6433 47 1 2.9314 -4.0967 -5.9065 48 1 3.1596 -2.7142 -7.0136 49 1 2.6369 -0.1723 -4.0245 50 1 2.9298 -1.9256 -4.1291 51 1 3.3112 -2.0138 -1.6860 52 1 1.7069 -1.3322 -2.0466 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001034045839.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:32:08 Heat of formation + Delta-G solvation = 45.141306 kcal Electronic energy + Delta-G solvation = -30437.520695 eV Core-core repulsion = 26632.002102 eV Total energy + Delta-G solvation = -3805.518593 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 333.216 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.77938 -39.88219 -38.95528 -36.05824 -35.60160 -33.90981 -33.32892 -32.05894 -31.67851 -30.93737 -28.78270 -28.13347 -26.43024 -25.27498 -24.18880 -23.53594 -22.38275 -21.98098 -20.89817 -19.66287 -18.98662 -18.91583 -18.46630 -17.22794 -16.85159 -16.72343 -16.26111 -16.07052 -15.79335 -15.68350 -15.55268 -15.03321 -14.59613 -14.43086 -14.34334 -14.07157 -13.93151 -13.71676 -13.67759 -13.40694 -13.33157 -12.99533 -12.92556 -12.90357 -12.73810 -12.49966 -12.35126 -12.11049 -12.02809 -12.01404 -11.78270 -11.76842 -11.53571 -11.48408 -11.36920 -11.26962 -11.00053 -10.68767 -10.56445 -9.64798 -9.28362 -8.81800 -7.73465 -5.16305 1.48331 1.48969 1.57204 1.61377 1.80324 1.97947 2.00837 2.51524 3.11064 3.35346 3.41662 3.56217 3.70366 3.79956 3.80946 3.87264 3.99043 4.10006 4.19634 4.22786 4.27801 4.38713 4.41465 4.44846 4.52287 4.56340 4.60359 4.68389 4.70773 4.74733 4.77244 4.85861 4.91501 4.94066 4.97633 4.98670 5.04402 5.12362 5.14838 5.17418 5.23424 5.28515 5.38791 5.51394 5.60591 5.76170 5.89392 6.06122 6.12718 6.37414 6.51604 6.76832 7.15781 7.19255 7.82873 8.45209 9.27067 Molecular weight = 333.22amu Principal moments of inertia in cm(-1) A = 0.016002 B = 0.003027 C = 0.002698 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1749.344225 B = 9247.223171 C =10376.237759 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.210 4.210 3 C 0.162 3.838 4 N -0.553 5.553 5 C 0.064 3.936 6 C -0.091 4.091 7 C -0.101 4.101 8 C 0.517 3.483 9 O -0.581 6.581 10 N -0.590 5.590 11 C 0.109 3.891 12 C -0.154 4.154 13 C 0.132 3.868 14 H 0.133 0.867 15 C -0.145 4.145 16 C 0.142 3.858 17 N -0.619 5.619 18 C -0.233 4.233 19 H 0.076 0.924 20 C -0.061 4.061 21 N -0.943 5.943 22 Si 0.972 3.028 23 H -0.292 1.292 24 H -0.295 1.295 25 H -0.271 1.271 26 C 0.123 3.877 27 C -0.106 4.106 28 C 0.064 3.936 29 H 0.239 0.761 30 H 0.072 0.928 31 H 0.111 0.889 32 H 0.055 0.945 33 H 0.095 0.905 34 H 0.074 0.926 35 H 0.058 0.942 36 H 0.113 0.887 37 H 0.077 0.923 38 H 0.058 0.942 39 H 0.052 0.948 40 H 0.064 0.936 41 H 0.062 0.938 42 H 0.081 0.919 43 H 0.083 0.917 44 H 0.067 0.933 45 H 0.018 0.982 46 H 0.245 0.755 47 H 0.045 0.955 48 H 0.017 0.983 49 H 0.057 0.943 50 H 0.082 0.918 51 H 0.054 0.946 52 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.148 9.767 20.195 22.653 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.210 4.210 3 C 0.036 3.964 4 N -0.278 5.278 5 C -0.063 4.063 6 C -0.130 4.130 7 C -0.122 4.122 8 C 0.307 3.693 9 O -0.461 6.461 10 N -0.321 5.321 11 C -0.014 4.014 12 C -0.212 4.212 13 C 0.028 3.972 14 H 0.151 0.849 15 C -0.184 4.184 16 C 0.018 3.982 17 N -0.346 5.346 18 C -0.363 4.363 19 H 0.094 0.906 20 C -0.254 4.254 21 N -0.593 5.593 22 Si 0.801 3.199 23 H -0.219 1.219 24 H -0.221 1.221 25 H -0.196 1.196 26 C -0.003 4.003 27 C -0.144 4.144 28 C -0.064 4.064 29 H 0.255 0.745 30 H 0.090 0.910 31 H 0.129 0.871 32 H 0.073 0.927 33 H 0.113 0.887 34 H 0.092 0.908 35 H 0.076 0.924 36 H 0.131 0.869 37 H 0.095 0.905 38 H 0.076 0.924 39 H 0.071 0.929 40 H 0.083 0.917 41 H 0.081 0.919 42 H 0.099 0.901 43 H 0.102 0.898 44 H 0.085 0.915 45 H 0.036 0.964 46 H 0.055 0.945 47 H 0.063 0.937 48 H 0.035 0.965 49 H 0.076 0.924 50 H 0.100 0.900 51 H 0.072 0.928 52 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -3.177 10.598 19.582 22.492 hybrid contribution -0.137 -1.235 -1.220 1.741 sum -3.315 9.363 18.363 20.877 Atomic orbital electron populations 1.25648 0.96898 1.00736 0.98713 1.23390 0.95183 1.00843 1.01592 1.19084 0.84552 1.03228 0.89523 1.61838 1.15034 1.37614 1.13339 1.22105 0.85894 1.02320 0.96018 1.21352 1.01245 0.96071 0.94300 1.21439 0.98618 1.01881 0.90283 1.21194 0.75850 0.83356 0.88919 1.90637 1.51839 1.24750 1.78891 1.48028 1.63043 1.08490 1.12543 1.21391 0.95111 1.01283 0.83572 1.22105 0.95078 1.01947 1.02045 1.22355 0.94924 0.81165 0.98755 0.84940 1.23292 0.98028 0.98413 0.98652 1.22035 0.84611 1.00745 0.90829 1.44727 1.03700 1.51252 1.34901 1.19353 0.92159 1.18547 1.06206 0.90568 1.25473 0.96158 1.01888 1.01860 1.70038 1.04010 1.44267 1.40936 0.85174 0.77636 0.77813 0.79265 1.21936 1.22129 1.19640 1.21775 0.94434 0.92572 0.91491 1.21639 0.92780 1.02534 0.97411 1.22026 1.01165 0.90664 0.92512 0.74482 0.91025 0.87108 0.92668 0.88684 0.90751 0.92365 0.86938 0.90514 0.92394 0.92902 0.91714 0.91876 0.90098 0.89828 0.91541 0.96379 0.94499 0.93680 0.96508 0.92398 0.90005 0.92767 0.90677 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -3.15 19.25 74.32 1.43 -1.72 16 2 C -0.21 -3.62 12.34 31.12 0.38 -3.24 16 3 C 0.16 2.20 5.46 84.50 0.46 2.66 16 4 N -0.55 -9.20 4.64 -907.42 -4.21 -13.40 16 5 C 0.06 0.90 5.46 86.33 0.47 1.37 16 6 C -0.09 -1.83 4.83 30.65 0.15 -1.68 16 7 C -0.10 -2.18 1.72 -11.46 -0.02 -2.20 16 8 C 0.52 15.68 6.87 87.66 0.60 16.29 16 9 O -0.58 -21.71 15.59 -3.04 -0.05 -21.76 16 10 N -0.59 -18.69 2.44 -791.25 -1.93 -20.63 16 11 C 0.11 3.96 5.03 86.38 0.43 4.39 16 12 C -0.15 -5.08 9.25 71.98 0.67 -4.41 16 13 C 0.13 3.93 2.74 46.18 0.13 4.05 16 14 H 0.13 3.01 4.33 -2.39 -0.01 3.00 16 15 C -0.14 -4.72 6.14 31.99 0.20 -4.52 16 16 C 0.14 6.37 4.74 86.85 0.41 6.78 16 17 N -0.62 -29.53 2.89 -691.96 -2.00 -31.53 16 18 C -0.23 -12.52 10.27 84.03 0.86 -11.65 16 19 H 0.08 3.97 7.83 -2.91 -0.02 3.95 16 20 C -0.06 -3.33 5.49 84.86 0.47 -2.86 16 21 N -0.94 -53.90 10.09 21.65 0.22 -53.68 16 22 Si 0.97 44.76 29.55 68.60 2.03 46.79 16 23 H -0.29 -13.47 7.11 99.48 0.71 -12.76 16 24 H -0.29 -13.66 7.11 99.48 0.71 -12.96 16 25 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 26 C 0.12 4.65 6.15 86.73 0.53 5.18 16 27 C -0.11 -2.17 5.01 30.65 0.15 -2.02 16 28 C 0.06 1.09 5.30 86.33 0.46 1.54 16 29 H 0.24 2.12 7.80 -4.42 -0.03 2.09 16 30 H 0.07 0.77 8.12 -2.38 -0.02 0.75 16 31 H 0.11 1.16 7.99 -2.39 -0.02 1.14 16 32 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 33 H 0.09 1.09 8.02 -2.39 -0.02 1.07 16 34 H 0.07 1.46 8.14 -2.38 -0.02 1.44 16 35 H 0.06 1.47 7.86 -2.39 -0.02 1.45 16 36 H 0.11 1.99 7.31 -2.39 -0.02 1.97 16 37 H 0.08 3.27 5.00 -2.39 -0.01 3.26 16 38 H 0.06 2.18 7.52 -2.39 -0.02 2.16 16 39 H 0.05 1.67 8.14 -2.39 -0.02 1.65 16 40 H 0.06 2.18 4.88 -2.39 -0.01 2.17 16 41 H 0.06 2.02 8.14 -2.38 -0.02 2.00 16 42 H 0.08 2.40 6.94 -2.39 -0.02 2.38 16 43 H 0.08 2.54 8.14 -2.39 -0.02 2.53 16 44 H 0.07 3.51 5.87 -2.39 -0.01 3.50 16 45 H 0.02 0.87 4.11 -2.38 -0.01 0.86 16 46 H 0.25 13.77 8.31 -92.71 -0.77 13.00 16 47 H 0.05 1.60 8.14 -2.39 -0.02 1.58 16 48 H 0.02 0.68 7.92 -2.39 -0.02 0.66 16 49 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 50 H 0.08 1.66 5.94 -2.39 -0.01 1.64 16 51 H 0.05 0.76 8.14 -2.39 -0.02 0.74 16 52 H 0.07 1.36 7.11 -2.39 -0.02 1.35 16 Total: -1.00 -67.54 390.57 2.74 -64.79 By element: Atomic # 1 Polarization: 20.54 SS G_CDS: 0.90 Total: 21.44 kcal Atomic # 6 Polarization: 0.19 SS G_CDS: 7.79 Total: 7.98 kcal Atomic # 7 Polarization: -111.32 SS G_CDS: -7.92 Total: -119.24 kcal Atomic # 8 Polarization: -21.71 SS G_CDS: -0.05 Total: -21.76 kcal Atomic # 14 Polarization: 44.76 SS G_CDS: 2.03 Total: 46.79 kcal Total: -67.54 2.74 -64.79 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034045839.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.936 kcal (2) G-P(sol) polarization free energy of solvation -67.539 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.397 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.744 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.795 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.141 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds