Wall clock time and date at job start Tue Mar 31 2020 18:05:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46500 * 109.47595 * 2 1 4 4 C 1.36446 * 124.85010 * 89.97226 * 3 2 1 5 5 C 1.50698 * 125.57535 * 0.02562 * 4 3 2 6 6 C 1.34493 * 108.85477 * 180.02562 * 4 3 2 7 7 C 1.46685 * 106.33174 * 0.02562 * 6 4 3 8 8 C 1.47260 * 126.94050 * 179.97438 * 7 6 4 9 9 O 1.21627 * 119.99961 * 180.02562 * 8 7 6 10 10 N 1.34773 * 120.00217 * 0.03219 * 8 7 6 11 11 C 1.46496 * 120.00487 * 179.97438 * 10 8 7 12 12 H 1.09005 * 109.24787 * 324.65725 * 11 10 8 13 13 C 1.54842 * 109.36378 * 204.99619 * 11 10 8 14 14 C 1.50126 * 110.78149 * 200.90078 * 13 11 10 15 15 C 1.52536 * 105.41487 * 97.70459 * 14 13 11 16 16 C 1.46235 * 114.27461 * 270.59718 * 15 14 13 17 17 N 1.50169 * 107.53521 * 58.40762 * 16 15 14 18 18 C 1.36937 * 120.53687 * 109.61197 * 17 16 15 19 19 H 1.08002 * 120.00389 * 156.70890 * 18 17 16 20 20 C 1.38815 * 119.99816 * 336.70025 * 18 17 16 21 21 N 1.31611 * 120.00423 * 340.42362 * 20 18 17 22 22 Si 1.86803 * 119.99583 * 160.42022 * 20 18 17 23 23 H 1.48500 * 109.47245 * 0.02562 * 22 20 18 24 24 H 1.48503 * 109.46622 * 120.00497 * 22 20 18 25 25 H 1.48497 * 109.47076 * 240.00127 * 22 20 18 26 26 C 1.43430 * 118.92475 * 289.58399 * 17 16 15 27 27 C 1.34664 * 124.84874 * 270.29077 * 3 2 1 28 28 C 1.50693 * 125.80248 * 0.02562 * 27 3 2 29 29 H 1.09002 * 109.46856 * 300.00318 * 1 2 3 30 30 H 1.09006 * 109.47116 * 59.99988 * 1 2 3 31 31 H 1.08996 * 109.47671 * 180.02562 * 1 2 3 32 32 H 1.08999 * 109.47235 * 240.00044 * 2 1 3 33 33 H 1.09006 * 109.47116 * 120.00012 * 2 1 3 34 34 H 1.09003 * 109.47541 * 270.00602 * 5 4 3 35 35 H 1.09005 * 109.46882 * 29.99857 * 5 4 3 36 36 H 1.08992 * 109.47241 * 149.99548 * 5 4 3 37 37 H 1.07997 * 126.82948 * 179.97438 * 6 4 3 38 38 H 0.97005 * 119.99830 * 359.97438 * 10 8 7 39 39 H 1.09005 * 109.20851 * 80.58170 * 13 11 10 40 40 H 1.08999 * 109.20622 * 321.22482 * 13 11 10 41 41 H 1.08992 * 110.25045 * 216.67425 * 14 13 11 42 42 H 1.08998 * 110.24884 * 338.73456 * 14 13 11 43 43 H 1.08998 * 108.52275 * 31.83814 * 15 14 13 44 44 H 1.08995 * 108.52061 * 149.51013 * 15 14 13 45 45 H 1.08999 * 109.84463 * 177.91334 * 16 15 14 46 46 H 1.09002 * 109.84816 * 298.89859 * 16 15 14 47 47 H 0.96994 * 120.00374 * 179.97438 * 21 20 18 48 48 H 1.08997 * 108.15828 * 213.28919 * 26 17 16 49 49 H 1.09002 * 108.16012 * 329.85710 * 26 17 16 50 50 H 1.08994 * 109.47404 * 270.16307 * 28 27 3 51 51 H 1.08999 * 109.47303 * 30.16853 * 28 27 3 52 52 H 1.09000 * 109.47039 * 150.16033 * 28 27 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2779 2.1164 1.1197 5 6 2.1094 1.6405 2.5396 6 6 2.7085 3.3354 0.7491 7 6 2.7111 3.3437 -0.7177 8 6 3.1043 4.4585 -1.5958 9 8 3.0571 4.3268 -2.8040 10 7 3.5167 5.6247 -1.0607 11 6 3.9084 6.7336 -1.9341 12 1 4.3988 6.3354 -2.8225 13 6 4.8910 7.6608 -1.1775 14 6 4.9224 9.0260 -1.8011 15 6 3.9828 9.8797 -0.9555 16 6 2.5913 9.8675 -1.4048 17 7 2.1218 8.4412 -1.3845 18 6 1.2081 8.0227 -0.4543 19 1 0.5989 7.1525 -0.6493 20 6 1.0651 8.7168 0.7393 21 7 2.0265 9.5127 1.1570 22 14 -0.4919 8.5211 1.7527 23 1 -1.4114 7.5758 1.0699 24 1 -0.1450 7.9907 3.0956 25 1 -1.1567 9.8409 1.8984 26 6 2.6454 7.5246 -2.3555 27 6 2.2697 2.1085 -1.1051 28 6 2.0959 1.6404 -2.5269 29 1 -0.3633 0.5139 0.8900 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3634 -1.0276 0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5139 0.8900 34 1 1.0997 1.8679 2.8818 35 1 2.2740 0.5638 2.5839 36 1 2.8325 2.1452 3.1802 37 1 2.9946 4.1470 1.4017 38 1 3.5541 5.7298 -0.0971 39 1 5.8908 7.2279 -1.2116 40 1 4.5734 7.7483 -0.1385 41 1 5.9332 9.4324 -1.7687 42 1 4.5660 8.9790 -2.8301 43 1 4.0180 9.5189 0.0724 44 1 4.3408 10.9091 -0.9724 45 1 1.9797 10.4680 -0.7314 46 1 2.5260 10.2641 -2.4180 47 1 1.9264 9.9980 1.9909 48 1 1.8623 6.8081 -2.6032 49 1 2.8828 8.0860 -3.2592 50 1 3.0217 1.1819 -2.8743 51 1 1.2889 0.9091 -2.5727 52 1 1.8512 2.4915 -3.1623 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001034297467.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:05:44 Heat of formation + Delta-G solvation = 25.630196 kcal Electronic energy + Delta-G solvation = -30555.095930 eV Core-core repulsion = 26748.731272 eV Total energy + Delta-G solvation = -3806.364658 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 333.216 amu Computer time = 1.67 seconds Orbital eigenvalues (eV) -41.33740 -38.89170 -37.36032 -34.13752 -34.00004 -32.98061 -32.50138 -30.91053 -30.08844 -29.23524 -28.75462 -26.06663 -24.94200 -23.95586 -23.50898 -22.79309 -21.43747 -19.99825 -19.42262 -18.96931 -18.23646 -16.73795 -16.50835 -15.72544 -15.33056 -15.19455 -14.85847 -14.72606 -14.35823 -13.94616 -13.61056 -13.46007 -13.30357 -13.18565 -13.12887 -12.99279 -12.80317 -12.47607 -12.31007 -12.25443 -12.06974 -12.00662 -11.65684 -11.58589 -11.50378 -11.41858 -11.19817 -11.18874 -10.72495 -10.62195 -10.38237 -9.98210 -9.84370 -9.60994 -9.35444 -9.15898 -9.07536 -8.50021 -8.38733 -8.10374 -7.73954 -6.58677 -5.71994 -3.09026 2.09165 2.60758 2.84298 3.40285 3.49267 3.52962 4.09877 4.21861 4.45047 4.57249 4.69094 4.75770 4.90456 4.97870 5.20327 5.30237 5.31816 5.39150 5.41865 5.49967 5.51736 5.59636 5.66701 5.72267 5.74574 5.78398 5.86246 5.90055 6.07030 6.12791 6.16988 6.26426 6.34132 6.38239 6.52387 6.56188 6.65829 6.74041 6.99032 7.04958 7.05475 7.08014 7.16200 7.28577 7.35789 7.41310 7.49568 7.69244 7.84222 8.07333 8.43142 8.52149 9.09635 9.28036 9.95519 10.48696 11.35048 Molecular weight = 333.22amu Principal moments of inertia in cm(-1) A = 0.011690 B = 0.004141 C = 0.003446 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2394.698897 B = 6760.375728 C = 8123.502371 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.097 3.903 3 N -0.441 5.441 4 C 0.003 3.997 5 C -0.080 4.080 6 C -0.158 4.158 7 C -0.221 4.221 8 C 0.588 3.412 9 O -0.570 6.570 10 N -0.697 5.697 11 C 0.120 3.880 12 H 0.069 0.931 13 C -0.110 4.110 14 C -0.112 4.112 15 C -0.129 4.129 16 C 0.164 3.836 17 N -0.584 5.584 18 C -0.232 4.232 19 H 0.064 0.936 20 C 0.001 3.999 21 N -0.902 5.902 22 Si 0.893 3.107 23 H -0.281 1.281 24 H -0.293 1.293 25 H -0.292 1.292 26 C 0.152 3.848 27 C 0.095 3.905 28 C -0.089 4.089 29 H 0.064 0.936 30 H 0.064 0.936 31 H 0.072 0.928 32 H 0.088 0.912 33 H 0.088 0.912 34 H 0.069 0.931 35 H 0.059 0.941 36 H 0.079 0.921 37 H 0.145 0.855 38 H 0.399 0.601 39 H 0.037 0.963 40 H 0.079 0.921 41 H 0.047 0.953 42 H 0.057 0.943 43 H 0.100 0.900 44 H 0.023 0.977 45 H 0.089 0.911 46 H 0.004 0.996 47 H 0.250 0.750 48 H 0.038 0.962 49 H 0.034 0.966 50 H 0.071 0.929 51 H 0.056 0.944 52 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.556 -16.152 -0.190 16.354 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.025 4.025 3 N -0.119 5.119 4 C -0.104 4.104 5 C -0.138 4.138 6 C -0.182 4.182 7 C -0.231 4.231 8 C 0.376 3.624 9 O -0.452 6.452 10 N -0.344 5.344 11 C 0.012 3.988 12 H 0.087 0.913 13 C -0.148 4.148 14 C -0.150 4.150 15 C -0.168 4.168 16 C 0.041 3.959 17 N -0.304 5.304 18 C -0.362 4.362 19 H 0.082 0.918 20 C -0.197 4.197 21 N -0.548 5.548 22 Si 0.724 3.276 23 H -0.206 1.206 24 H -0.221 1.221 25 H -0.219 1.219 26 C 0.021 3.979 27 C -0.020 4.020 28 C -0.146 4.146 29 H 0.083 0.917 30 H 0.083 0.917 31 H 0.091 0.909 32 H 0.106 0.894 33 H 0.107 0.893 34 H 0.088 0.912 35 H 0.077 0.923 36 H 0.098 0.902 37 H 0.162 0.838 38 H 0.234 0.766 39 H 0.056 0.944 40 H 0.097 0.903 41 H 0.066 0.934 42 H 0.075 0.925 43 H 0.119 0.881 44 H 0.042 0.958 45 H 0.107 0.893 46 H 0.022 0.978 47 H 0.060 0.940 48 H 0.056 0.944 49 H 0.052 0.948 50 H 0.089 0.911 51 H 0.075 0.925 52 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 2.383 -16.438 -0.858 16.632 hybrid contribution -0.746 -0.030 1.331 1.526 sum 1.637 -16.468 0.473 16.556 Atomic orbital electron populations 1.22173 0.94385 1.02740 1.03551 1.21792 0.95580 0.81075 1.04066 1.43553 1.51641 1.11555 1.05147 1.20099 1.09043 0.92837 0.88441 1.20285 1.02847 1.00634 0.89995 1.21857 1.06424 0.96452 0.93448 1.20241 1.14777 0.94827 0.93208 1.17247 0.76580 0.81696 0.86848 1.90655 1.56403 1.83418 1.14730 1.45755 1.65921 1.12230 1.10513 1.22706 0.97554 0.86187 0.92315 0.91253 1.21660 0.96482 0.95143 1.01494 1.20974 0.98599 0.95810 0.99611 1.21004 0.96231 0.96746 1.02824 1.20176 0.94104 0.85740 0.95919 1.44245 1.47190 1.03785 1.35209 1.19206 1.10423 1.11695 0.94837 0.91783 1.24816 0.97612 1.01015 0.96213 1.69972 1.30143 1.32926 1.21722 0.86350 0.84106 0.77228 0.79903 1.20587 1.22062 1.21871 1.20782 0.93121 0.92273 0.91675 1.20187 1.01788 0.91173 0.88870 1.20507 1.01373 1.02799 0.89941 0.91726 0.91666 0.90904 0.89355 0.89338 0.91247 0.92257 0.90187 0.83761 0.76619 0.94413 0.90263 0.93393 0.92467 0.88138 0.95831 0.89317 0.97787 0.94016 0.94416 0.94811 0.91052 0.92482 0.87970 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.33 10.24 37.16 0.38 -0.95 16 2 C 0.10 0.81 6.08 -4.04 -0.02 0.79 16 3 N -0.44 -5.58 2.69 -107.96 -0.29 -5.87 16 4 C 0.00 0.04 6.85 -81.86 -0.56 -0.52 16 5 C -0.08 -0.77 10.06 36.00 0.36 -0.41 16 6 C -0.16 -2.51 10.45 -37.50 -0.39 -2.91 16 7 C -0.22 -3.92 6.29 -103.35 -0.65 -4.57 16 8 C 0.59 11.79 7.64 -12.60 -0.10 11.70 16 9 O -0.57 -12.47 14.48 5.25 0.08 -12.40 16 10 N -0.70 -13.74 5.08 -53.04 -0.27 -14.01 16 11 C 0.12 2.40 2.91 -65.98 -0.19 2.21 16 12 H 0.07 1.39 7.58 -51.93 -0.39 1.00 16 13 C -0.11 -2.07 5.23 -27.19 -0.14 -2.21 16 14 C -0.11 -2.06 5.76 -28.40 -0.16 -2.22 16 15 C -0.13 -2.74 5.02 -30.18 -0.15 -2.89 16 16 C 0.16 3.82 5.24 -5.20 -0.03 3.79 16 17 N -0.58 -14.22 2.60 -175.11 -0.46 -14.67 16 18 C -0.23 -6.17 9.63 -15.06 -0.14 -6.32 16 19 H 0.06 1.79 7.89 -52.49 -0.41 1.38 16 20 C 0.00 0.02 4.91 -17.43 -0.09 -0.07 16 21 N -0.90 -24.24 9.43 55.49 0.52 -23.72 16 22 Si 0.89 21.56 29.60 -169.99 -5.03 16.53 16 23 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 24 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 25 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 26 C 0.15 3.37 4.78 -4.68 -0.02 3.35 16 27 C 0.10 1.45 6.89 -81.88 -0.56 0.89 16 28 C -0.09 -1.16 9.26 36.00 0.33 -0.83 16 29 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 30 H 0.06 0.59 8.11 -51.93 -0.42 0.17 16 31 H 0.07 0.40 8.14 -51.93 -0.42 -0.03 16 32 H 0.09 0.63 7.51 -51.93 -0.39 0.24 16 33 H 0.09 0.59 6.90 -51.93 -0.36 0.23 16 34 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 35 H 0.06 0.45 6.94 -51.93 -0.36 0.09 16 36 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 37 H 0.14 2.22 7.70 -52.49 -0.40 1.81 16 38 H 0.40 7.78 7.57 -40.82 -0.31 7.47 16 39 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 40 H 0.08 1.69 6.59 -51.93 -0.34 1.35 16 41 H 0.05 0.79 8.14 -51.93 -0.42 0.36 16 42 H 0.06 1.05 6.28 -51.93 -0.33 0.72 16 43 H 0.10 2.42 5.29 -51.93 -0.27 2.15 16 44 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 45 H 0.09 2.30 6.05 -51.93 -0.31 1.99 16 46 H 0.00 0.09 8.12 -51.93 -0.42 -0.33 16 47 H 0.25 6.63 8.31 -40.82 -0.34 6.29 16 48 H 0.04 0.92 7.83 -51.93 -0.41 0.51 16 49 H 0.03 0.71 6.89 -51.93 -0.36 0.36 16 50 H 0.07 0.86 8.14 -51.93 -0.42 0.43 16 51 H 0.06 0.59 7.56 -51.93 -0.39 0.19 16 52 H 0.10 1.59 6.47 -51.93 -0.34 1.26 16 LS Contribution 397.13 15.07 5.98 5.98 Total: -1.00 -30.31 397.13 -10.34 -40.65 By element: Atomic # 1 Polarization: 17.42 SS G_CDS: -8.74 Total: 8.68 kcal Atomic # 6 Polarization: 0.96 SS G_CDS: -2.14 Total: -1.18 kcal Atomic # 7 Polarization: -57.78 SS G_CDS: -0.49 Total: -58.27 kcal Atomic # 8 Polarization: -12.47 SS G_CDS: 0.08 Total: -12.40 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.03 Total: 16.53 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -30.31 -10.34 -40.65 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034297467.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.283 kcal (2) G-P(sol) polarization free energy of solvation -30.311 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.972 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.342 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.653 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.630 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.67 seconds