Wall clock time and date at job start Tue Mar 31 2020 18:05:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46500 * 109.47595 * 2 1 4 4 C 1.36446 * 124.85010 * 89.97226 * 3 2 1 5 5 C 1.50698 * 125.57535 * 0.02562 * 4 3 2 6 6 C 1.34493 * 108.85477 * 180.02562 * 4 3 2 7 7 C 1.46685 * 106.33174 * 0.02562 * 6 4 3 8 8 C 1.47260 * 126.94050 * 179.97438 * 7 6 4 9 9 O 1.21627 * 119.99961 * 180.02562 * 8 7 6 10 10 N 1.34773 * 120.00217 * 0.03219 * 8 7 6 11 11 C 1.46496 * 120.00487 * 179.97438 * 10 8 7 12 12 H 1.09005 * 109.24787 * 324.65725 * 11 10 8 13 13 C 1.54842 * 109.36378 * 204.99619 * 11 10 8 14 14 C 1.50126 * 110.78149 * 200.90078 * 13 11 10 15 15 C 1.52536 * 105.41487 * 97.70459 * 14 13 11 16 16 C 1.46235 * 114.27461 * 270.59718 * 15 14 13 17 17 N 1.50169 * 107.53521 * 58.40762 * 16 15 14 18 18 C 1.36937 * 120.53687 * 109.61197 * 17 16 15 19 19 H 1.08002 * 120.00389 * 156.70890 * 18 17 16 20 20 C 1.38815 * 119.99816 * 336.70025 * 18 17 16 21 21 N 1.31611 * 120.00423 * 340.42362 * 20 18 17 22 22 Si 1.86803 * 119.99583 * 160.42022 * 20 18 17 23 23 H 1.48500 * 109.47245 * 0.02562 * 22 20 18 24 24 H 1.48503 * 109.46622 * 120.00497 * 22 20 18 25 25 H 1.48497 * 109.47076 * 240.00127 * 22 20 18 26 26 C 1.43430 * 118.92475 * 289.58399 * 17 16 15 27 27 C 1.34664 * 124.84874 * 270.29077 * 3 2 1 28 28 C 1.50693 * 125.80248 * 0.02562 * 27 3 2 29 29 H 1.09002 * 109.46856 * 300.00318 * 1 2 3 30 30 H 1.09006 * 109.47116 * 59.99988 * 1 2 3 31 31 H 1.08996 * 109.47671 * 180.02562 * 1 2 3 32 32 H 1.08999 * 109.47235 * 240.00044 * 2 1 3 33 33 H 1.09006 * 109.47116 * 120.00012 * 2 1 3 34 34 H 1.09003 * 109.47541 * 270.00602 * 5 4 3 35 35 H 1.09005 * 109.46882 * 29.99857 * 5 4 3 36 36 H 1.08992 * 109.47241 * 149.99548 * 5 4 3 37 37 H 1.07997 * 126.82948 * 179.97438 * 6 4 3 38 38 H 0.97005 * 119.99830 * 359.97438 * 10 8 7 39 39 H 1.09005 * 109.20851 * 80.58170 * 13 11 10 40 40 H 1.08999 * 109.20622 * 321.22482 * 13 11 10 41 41 H 1.08992 * 110.25045 * 216.67425 * 14 13 11 42 42 H 1.08998 * 110.24884 * 338.73456 * 14 13 11 43 43 H 1.08998 * 108.52275 * 31.83814 * 15 14 13 44 44 H 1.08995 * 108.52061 * 149.51013 * 15 14 13 45 45 H 1.08999 * 109.84463 * 177.91334 * 16 15 14 46 46 H 1.09002 * 109.84816 * 298.89859 * 16 15 14 47 47 H 0.96994 * 120.00374 * 179.97438 * 21 20 18 48 48 H 1.08997 * 108.15828 * 213.28919 * 26 17 16 49 49 H 1.09002 * 108.16012 * 329.85710 * 26 17 16 50 50 H 1.08994 * 109.47404 * 270.16307 * 28 27 3 51 51 H 1.08999 * 109.47303 * 30.16853 * 28 27 3 52 52 H 1.09000 * 109.47039 * 150.16033 * 28 27 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2779 2.1164 1.1197 5 6 2.1094 1.6405 2.5396 6 6 2.7085 3.3354 0.7491 7 6 2.7111 3.3437 -0.7177 8 6 3.1043 4.4585 -1.5958 9 8 3.0571 4.3268 -2.8040 10 7 3.5167 5.6247 -1.0607 11 6 3.9084 6.7336 -1.9341 12 1 4.3988 6.3354 -2.8225 13 6 4.8910 7.6608 -1.1775 14 6 4.9224 9.0260 -1.8011 15 6 3.9828 9.8797 -0.9555 16 6 2.5913 9.8675 -1.4048 17 7 2.1218 8.4412 -1.3845 18 6 1.2081 8.0227 -0.4543 19 1 0.5989 7.1525 -0.6493 20 6 1.0651 8.7168 0.7393 21 7 2.0265 9.5127 1.1570 22 14 -0.4919 8.5211 1.7527 23 1 -1.4114 7.5758 1.0699 24 1 -0.1450 7.9907 3.0956 25 1 -1.1567 9.8409 1.8984 26 6 2.6454 7.5246 -2.3555 27 6 2.2697 2.1085 -1.1051 28 6 2.0959 1.6404 -2.5269 29 1 -0.3633 0.5139 0.8900 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3634 -1.0276 0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5139 0.8900 34 1 1.0997 1.8679 2.8818 35 1 2.2740 0.5638 2.5839 36 1 2.8325 2.1452 3.1802 37 1 2.9946 4.1470 1.4017 38 1 3.5541 5.7298 -0.0971 39 1 5.8908 7.2279 -1.2116 40 1 4.5734 7.7483 -0.1385 41 1 5.9332 9.4324 -1.7687 42 1 4.5660 8.9790 -2.8301 43 1 4.0180 9.5189 0.0724 44 1 4.3408 10.9091 -0.9724 45 1 1.9797 10.4680 -0.7314 46 1 2.5260 10.2641 -2.4180 47 1 1.9264 9.9980 1.9909 48 1 1.8623 6.8081 -2.6032 49 1 2.8828 8.0860 -3.2592 50 1 3.0217 1.1819 -2.8743 51 1 1.2889 0.9091 -2.5727 52 1 1.8512 2.4915 -3.1623 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001034297467.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:05:42 Heat of formation + Delta-G solvation = 9.628503 kcal Electronic energy + Delta-G solvation = -30555.789815 eV Core-core repulsion = 26748.731272 eV Total energy + Delta-G solvation = -3807.058543 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 333.216 amu Computer time = 1.49 seconds Orbital eigenvalues (eV) -42.42856 -40.49486 -39.04231 -35.75726 -35.02238 -34.67129 -33.55756 -32.85035 -31.64902 -30.21174 -29.83931 -27.93427 -26.30766 -25.31884 -24.80491 -24.27719 -22.70170 -21.61004 -20.79866 -20.63326 -19.44770 -18.53761 -17.91369 -16.96423 -16.89349 -16.57065 -16.40639 -16.05764 -15.73566 -15.50385 -15.33393 -14.84568 -14.57455 -14.37688 -14.09871 -14.03235 -13.98342 -13.79768 -13.65800 -13.45395 -13.38319 -13.21943 -13.16893 -13.16199 -12.87676 -12.65302 -12.48786 -12.34151 -12.31073 -12.21664 -12.08941 -11.87718 -11.75789 -11.27251 -11.11652 -10.90733 -10.65729 -10.43021 -9.89798 -9.46924 -8.90090 -8.54688 -7.77989 -5.16734 0.83277 1.43740 1.45547 1.48467 1.56742 1.87531 2.55664 2.61995 2.75166 3.34443 3.64509 3.79353 3.79780 3.91409 3.99067 4.10649 4.18384 4.20562 4.31665 4.35771 4.46868 4.50313 4.56723 4.59866 4.67637 4.70697 4.73253 4.76891 4.79620 4.86914 4.87737 4.93500 4.99125 5.04563 5.09346 5.12719 5.23857 5.24729 5.34186 5.34668 5.40212 5.51145 5.63012 5.72034 5.82705 5.85092 5.89139 6.17712 6.25410 6.42739 6.46359 6.87879 7.23768 7.53487 7.95329 8.45391 9.25820 Molecular weight = 333.22amu Principal moments of inertia in cm(-1) A = 0.011690 B = 0.004141 C = 0.003446 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2394.698897 B = 6760.375728 C = 8123.502371 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.087 3.913 3 N -0.433 5.433 4 C 0.016 3.984 5 C -0.078 4.078 6 C -0.191 4.191 7 C -0.265 4.265 8 C 0.581 3.419 9 O -0.597 6.597 10 N -0.698 5.698 11 C 0.127 3.873 12 H 0.072 0.928 13 C -0.098 4.098 14 C -0.103 4.103 15 C -0.121 4.121 16 C 0.166 3.834 17 N -0.592 5.592 18 C -0.240 4.240 19 H 0.042 0.958 20 C -0.032 4.032 21 N -0.910 5.910 22 Si 0.945 3.055 23 H -0.286 1.286 24 H -0.291 1.291 25 H -0.292 1.292 26 C 0.157 3.843 27 C 0.096 3.904 28 C -0.084 4.084 29 H 0.054 0.946 30 H 0.048 0.952 31 H 0.102 0.898 32 H 0.106 0.894 33 H 0.115 0.885 34 H 0.075 0.925 35 H 0.087 0.913 36 H 0.085 0.915 37 H 0.137 0.863 38 H 0.398 0.602 39 H 0.061 0.939 40 H 0.052 0.948 41 H 0.077 0.923 42 H 0.062 0.938 43 H 0.071 0.929 44 H 0.037 0.963 45 H 0.059 0.941 46 H 0.019 0.981 47 H 0.247 0.753 48 H 0.007 0.993 49 H 0.046 0.954 50 H 0.083 0.917 51 H 0.087 0.913 52 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.978 -18.325 0.417 18.570 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C -0.033 4.033 3 N -0.110 5.110 4 C -0.093 4.093 5 C -0.136 4.136 6 C -0.215 4.215 7 C -0.275 4.275 8 C 0.372 3.628 9 O -0.481 6.481 10 N -0.345 5.345 11 C 0.019 3.981 12 H 0.090 0.910 13 C -0.137 4.137 14 C -0.141 4.141 15 C -0.160 4.160 16 C 0.043 3.957 17 N -0.314 5.314 18 C -0.370 4.370 19 H 0.060 0.940 20 C -0.228 4.228 21 N -0.556 5.556 22 Si 0.776 3.224 23 H -0.211 1.211 24 H -0.218 1.218 25 H -0.219 1.219 26 C 0.027 3.973 27 C -0.022 4.022 28 C -0.141 4.141 29 H 0.073 0.927 30 H 0.067 0.933 31 H 0.121 0.879 32 H 0.125 0.875 33 H 0.133 0.867 34 H 0.094 0.906 35 H 0.106 0.894 36 H 0.104 0.896 37 H 0.155 0.845 38 H 0.233 0.767 39 H 0.080 0.920 40 H 0.071 0.929 41 H 0.096 0.904 42 H 0.080 0.920 43 H 0.090 0.910 44 H 0.055 0.945 45 H 0.078 0.922 46 H 0.037 0.963 47 H 0.057 0.943 48 H 0.025 0.975 49 H 0.064 0.936 50 H 0.102 0.898 51 H 0.106 0.894 52 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 2.809 -18.628 -0.243 18.840 hybrid contribution -0.935 0.574 1.126 1.572 sum 1.874 -18.054 0.883 18.173 Atomic orbital electron populations 1.22158 0.93801 1.04278 1.02244 1.22231 0.95999 0.78660 1.06366 1.43868 1.50158 1.12909 1.04045 1.20617 1.06472 0.91933 0.90247 1.20411 1.03404 1.02458 0.87292 1.21919 1.08868 0.97942 0.92732 1.20274 1.17753 0.95467 0.93996 1.17700 0.75909 0.82258 0.86938 1.90617 1.57673 1.83982 1.15840 1.45762 1.66091 1.12307 1.10351 1.22548 0.96533 0.86250 0.92782 0.90998 1.21543 0.97100 0.95450 0.99559 1.20943 0.99456 0.94700 0.99028 1.20819 0.95612 0.98011 1.01571 1.20136 0.94911 0.84626 0.96002 1.44291 1.47456 1.04607 1.35043 1.19081 1.11001 1.11373 0.95581 0.94031 1.25276 0.99479 1.01146 0.96895 1.70097 1.30726 1.33075 1.21674 0.85552 0.81474 0.76737 0.78665 1.21120 1.21782 1.21878 1.20736 0.93193 0.91643 0.91678 1.20444 1.00590 0.90771 0.90403 1.20471 1.03090 1.02322 0.88196 0.92699 0.93318 0.87928 0.87543 0.86673 0.90605 0.89383 0.89606 0.84494 0.76733 0.91998 0.92916 0.90407 0.91965 0.91045 0.94458 0.92235 0.96310 0.94331 0.97493 0.93618 0.89812 0.89383 0.90963 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.10 10.24 71.98 0.74 -1.37 16 2 C 0.09 1.15 6.08 86.38 0.53 1.68 16 3 N -0.43 -10.20 2.69 -495.49 -1.33 -11.53 16 4 C 0.02 0.40 6.85 40.98 0.28 0.68 16 5 C -0.08 -1.31 10.06 71.24 0.72 -0.59 16 6 C -0.19 -6.25 10.45 23.62 0.25 -6.01 16 7 C -0.27 -9.76 6.29 -19.04 -0.12 -9.88 16 8 C 0.58 24.51 7.64 86.62 0.66 25.17 16 9 O -0.60 -27.35 14.48 -4.12 -0.06 -27.41 16 10 N -0.70 -28.84 5.08 -439.97 -2.24 -31.08 16 11 C 0.13 5.15 2.91 46.26 0.13 5.28 16 12 H 0.07 2.90 7.58 -2.38 -0.02 2.88 16 13 C -0.10 -3.66 5.23 30.30 0.16 -3.50 16 14 C -0.10 -3.63 5.76 29.51 0.17 -3.46 16 15 C -0.12 -5.09 5.02 28.36 0.14 -4.94 16 16 C 0.17 7.81 5.24 83.58 0.44 8.25 16 17 N -0.59 -29.65 2.60 -707.92 -1.84 -31.49 16 18 C -0.24 -13.24 9.63 84.03 0.81 -12.44 16 19 H 0.04 2.45 7.89 -2.91 -0.02 2.43 16 20 C -0.03 -1.72 4.91 84.86 0.42 -1.31 16 21 N -0.91 -49.84 9.43 21.65 0.20 -49.64 16 22 Si 0.95 45.24 29.60 68.60 2.03 47.27 16 23 H -0.29 -13.80 7.11 99.48 0.71 -13.09 16 24 H -0.29 -13.74 7.11 99.48 0.71 -13.03 16 25 H -0.29 -13.92 7.11 99.48 0.71 -13.22 16 26 C 0.16 7.17 4.78 87.58 0.42 7.59 16 27 C 0.10 2.89 6.89 41.78 0.29 3.18 16 28 C -0.08 -2.14 9.26 71.23 0.66 -1.48 16 29 H 0.05 0.81 8.14 -2.39 -0.02 0.79 16 30 H 0.05 0.78 8.11 -2.38 -0.02 0.76 16 31 H 0.10 0.70 8.14 -2.39 -0.02 0.69 16 32 H 0.11 1.08 7.51 -2.39 -0.02 1.07 16 33 H 0.12 0.97 6.90 -2.38 -0.02 0.96 16 34 H 0.08 1.22 8.14 -2.39 -0.02 1.20 16 35 H 0.09 0.98 6.94 -2.38 -0.02 0.96 16 36 H 0.09 1.36 8.14 -2.39 -0.02 1.34 16 37 H 0.14 4.48 7.70 -2.91 -0.02 4.46 16 38 H 0.40 16.46 7.57 -92.70 -0.70 15.76 16 39 H 0.06 2.00 8.14 -2.38 -0.02 1.98 16 40 H 0.05 2.27 6.59 -2.39 -0.02 2.26 16 41 H 0.08 2.30 8.14 -2.39 -0.02 2.29 16 42 H 0.06 2.14 6.28 -2.39 -0.02 2.13 16 43 H 0.07 3.47 5.29 -2.39 -0.01 3.46 16 44 H 0.04 1.43 8.14 -2.39 -0.02 1.41 16 45 H 0.06 3.15 6.05 -2.39 -0.01 3.13 16 46 H 0.02 0.82 8.12 -2.39 -0.02 0.80 16 47 H 0.25 13.30 8.31 -92.71 -0.77 12.53 16 48 H 0.01 0.35 7.83 -2.39 -0.02 0.33 16 49 H 0.05 1.94 6.89 -2.39 -0.02 1.93 16 50 H 0.08 1.92 8.14 -2.39 -0.02 1.90 16 51 H 0.09 1.65 7.56 -2.39 -0.02 1.63 16 52 H 0.07 2.33 6.47 -2.39 -0.02 2.31 16 Total: -1.00 -68.62 397.13 3.66 -64.95 By element: Atomic # 1 Polarization: 31.84 SS G_CDS: 0.21 Total: 32.05 kcal Atomic # 6 Polarization: 0.19 SS G_CDS: 6.68 Total: 6.87 kcal Atomic # 7 Polarization: -118.54 SS G_CDS: -5.20 Total: -123.74 kcal Atomic # 8 Polarization: -27.35 SS G_CDS: -0.06 Total: -27.41 kcal Atomic # 14 Polarization: 45.24 SS G_CDS: 2.03 Total: 47.27 kcal Total: -68.62 3.66 -64.95 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034297467.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.583 kcal (2) G-P(sol) polarization free energy of solvation -68.618 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.965 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.663 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.954 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.629 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.49 seconds