Wall clock time and date at job start Tue Mar 31 2020 18:00:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46492 * 109.47113 * 2 1 4 4 C 1.36454 * 124.85404 * 90.02948 * 3 2 1 5 5 C 1.50699 * 125.56403 * 0.02562 * 4 3 2 6 6 C 1.34478 * 108.86004 * 179.75048 * 4 3 2 7 7 C 1.46690 * 106.33431 * 0.22299 * 6 4 3 8 8 C 1.47259 * 126.94189 * 179.97438 * 7 6 4 9 9 O 1.21627 * 119.99869 * 131.10363 * 8 7 6 10 10 N 1.34774 * 120.00147 * 311.09913 * 8 7 6 11 11 C 1.46925 * 120.62824 * 4.32963 * 10 8 7 12 12 C 1.53194 * 108.77364 * 233.58219 * 11 10 8 13 13 C 1.53042 * 109.31181 * 305.36278 * 12 11 10 14 14 H 1.08994 * 109.46148 * 301.34580 * 13 12 11 15 15 N 1.46498 * 109.45791 * 181.38826 * 13 12 11 16 16 C 1.36936 * 120.00495 * 85.00329 * 15 13 12 17 17 H 1.08001 * 119.99429 * 359.97438 * 16 15 13 18 18 C 1.38812 * 120.00090 * 179.97438 * 16 15 13 19 19 N 1.31612 * 120.00065 * 0.02562 * 18 16 15 20 20 Si 1.86803 * 119.99531 * 179.97438 * 18 16 15 21 21 H 1.48501 * 109.47161 * 90.00008 * 20 18 16 22 22 H 1.48498 * 109.46994 * 209.99805 * 20 18 16 23 23 H 1.48501 * 109.47337 * 330.00231 * 20 18 16 24 24 C 1.53041 * 109.53537 * 61.36799 * 13 12 11 25 25 H 1.08996 * 109.49706 * 58.58422 * 24 13 12 26 26 C 1.53003 * 109.49511 * 178.64664 * 24 13 12 27 27 C 1.46928 * 120.62957 * 184.04354 * 10 8 7 28 28 C 1.34661 * 124.85416 * 270.17696 * 3 2 1 29 29 C 1.50700 * 125.80146 * 0.02562 * 28 3 2 30 30 H 1.09001 * 109.47236 * 59.99512 * 1 2 3 31 31 H 1.09001 * 109.47587 * 180.02562 * 1 2 3 32 32 H 1.08997 * 109.47166 * 300.00104 * 1 2 3 33 33 H 1.08997 * 109.46642 * 239.99860 * 2 1 3 34 34 H 1.08997 * 109.46794 * 120.00677 * 2 1 3 35 35 H 1.08994 * 109.47461 * 269.71939 * 5 4 3 36 36 H 1.09003 * 109.46989 * 149.72163 * 5 4 3 37 37 H 1.09001 * 109.47757 * 29.71964 * 5 4 3 38 38 H 1.07997 * 126.83521 * 180.25385 * 6 4 3 39 39 H 1.09002 * 109.59088 * 353.37190 * 11 10 8 40 40 H 1.09001 * 109.58596 * 113.79610 * 11 10 8 41 41 H 1.08999 * 109.49842 * 65.31937 * 12 11 10 42 42 H 1.09001 * 109.49284 * 185.41438 * 12 11 10 43 43 H 0.97002 * 119.99754 * 265.00258 * 15 13 12 44 44 H 0.97000 * 119.99878 * 180.02562 * 19 18 16 45 45 H 1.09001 * 109.47060 * 60.00462 * 26 24 13 46 46 H 1.09003 * 109.46743 * 179.97438 * 26 24 13 47 47 H 1.08996 * 109.47067 * 300.00194 * 26 24 13 48 48 H 1.08999 * 109.58758 * 246.20011 * 27 10 8 49 49 H 1.08993 * 109.58628 * 6.63527 * 27 10 8 50 50 H 1.09003 * 109.47084 * 270.26328 * 29 28 3 51 51 H 1.09001 * 109.47154 * 30.25558 * 29 28 3 52 52 H 1.09001 * 109.47394 * 150.26277 * 29 28 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3811 0.0000 4 6 2.2788 2.1162 1.1198 5 6 2.1116 1.6395 2.5396 6 6 2.7147 3.3332 0.7492 7 6 2.7152 3.3422 -0.7177 8 6 3.1125 4.4557 -1.5957 9 8 3.8836 4.2594 -2.5156 10 7 2.6217 5.6922 -1.3800 11 6 1.7648 5.9652 -0.2181 12 6 0.4664 6.6161 -0.7052 13 6 0.8029 7.8523 -1.5423 14 1 1.3814 8.5524 -0.9397 15 7 -0.4372 8.4962 -1.9822 16 6 -1.0746 9.3877 -1.1610 17 1 -0.6631 9.6157 -0.1888 18 6 -2.2494 9.9982 -1.5781 19 7 -2.7510 9.7198 -2.7626 20 14 -3.1190 11.2137 -0.4575 21 1 -2.6069 12.5827 -0.7198 22 1 -4.5798 11.1726 -0.7215 23 1 -2.8617 10.8521 0.9597 24 6 1.6222 7.4344 -2.7656 25 1 1.0540 6.7153 -3.3555 26 6 1.9294 8.6663 -3.6194 27 6 2.9383 6.7941 -2.2988 28 6 2.2716 2.1078 -1.1050 29 6 2.1006 1.6388 -2.5269 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3634 -1.0276 0.0005 32 1 -0.3633 0.5138 0.8899 33 1 1.8933 -0.5139 -0.8900 34 1 1.8933 -0.5139 0.8899 35 1 1.1040 1.8713 2.8844 36 1 2.8386 2.1405 3.1789 37 1 2.2715 0.5622 2.5825 38 1 3.0069 4.1426 1.4017 39 1 1.5354 5.0310 0.2944 40 1 2.2792 6.6419 0.4643 41 1 -0.0909 5.9047 -1.3146 42 1 -0.1368 6.9113 0.1534 43 1 -0.8070 8.2911 -2.8552 44 1 -3.5718 10.1468 -3.0542 45 1 2.4986 9.3846 -3.0294 46 1 2.5133 8.3682 -4.4903 47 1 0.9956 9.1236 -3.9467 48 1 3.5464 7.5370 -1.7827 49 1 3.4833 6.4069 -3.1596 50 1 3.0266 1.1787 -2.8716 51 1 1.2927 0.9087 -2.5740 52 1 1.8588 2.4899 -3.1637 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001036103513.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:00:48 Heat of formation + Delta-G solvation = -5.953351 kcal Electronic energy + Delta-G solvation = -29959.784104 eV Core-core repulsion = 26152.049881 eV Total energy + Delta-G solvation = -3807.734223 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 333.216 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -42.51220 -40.85770 -38.83968 -36.13243 -35.10816 -34.27007 -33.64571 -33.01782 -31.02231 -30.41343 -30.03163 -27.73534 -26.86505 -25.61548 -24.56318 -24.15251 -23.04938 -22.32466 -21.14051 -20.52962 -19.11582 -18.85300 -17.99075 -17.23676 -16.82457 -16.70057 -16.20927 -15.87732 -15.68621 -15.45746 -15.40322 -14.92870 -14.70564 -14.49181 -14.30721 -14.09788 -14.04111 -13.73888 -13.68917 -13.63551 -13.44506 -13.12593 -13.07419 -12.94996 -12.89610 -12.84218 -12.70597 -12.47560 -12.44996 -12.26560 -12.13179 -12.08039 -12.01386 -11.83060 -11.64035 -11.14966 -10.95990 -10.79291 -9.64971 -9.41006 -8.94128 -8.88342 -7.89638 -5.17293 0.93312 1.47220 1.49211 1.50429 1.58530 1.79642 2.09989 2.36761 2.59331 3.43496 3.67230 3.77783 3.80124 3.82226 3.91386 4.01376 4.11822 4.12187 4.16838 4.25334 4.34674 4.36178 4.39557 4.51274 4.53923 4.60848 4.63409 4.70826 4.77469 4.80890 4.82757 4.84560 4.85565 4.86354 4.98272 5.00143 5.02711 5.06033 5.14759 5.19177 5.26213 5.27746 5.34785 5.41856 5.52812 5.57839 5.68009 5.87618 6.19378 6.31568 6.42109 6.52167 7.25250 7.38005 8.13721 8.38015 9.34079 Molecular weight = 333.22amu Principal moments of inertia in cm(-1) A = 0.013091 B = 0.003101 C = 0.002799 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2138.303277 B = 9027.465356 C =10001.433090 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.088 3.912 3 N -0.433 5.433 4 C 0.021 3.979 5 C -0.080 4.080 6 C -0.187 4.187 7 C -0.254 4.254 8 C 0.590 3.410 9 O -0.590 6.590 10 N -0.601 5.601 11 C 0.114 3.886 12 C -0.137 4.137 13 C 0.181 3.819 14 H 0.048 0.952 15 N -0.731 5.731 16 C -0.230 4.230 17 H 0.077 0.923 18 C -0.077 4.077 19 N -0.972 5.972 20 Si 0.968 3.032 21 H -0.290 1.290 22 H -0.300 1.300 23 H -0.268 1.268 24 C -0.098 4.098 25 H 0.050 0.950 26 C -0.129 4.129 27 C 0.127 3.873 28 C 0.079 3.921 29 C -0.083 4.083 30 H 0.047 0.953 31 H 0.098 0.902 32 H 0.058 0.942 33 H 0.101 0.899 34 H 0.115 0.885 35 H 0.080 0.920 36 H 0.089 0.911 37 H 0.081 0.919 38 H 0.152 0.848 39 H 0.105 0.895 40 H 0.081 0.919 41 H 0.038 0.962 42 H 0.064 0.936 43 H 0.370 0.630 44 H 0.248 0.752 45 H 0.059 0.941 46 H 0.064 0.936 47 H 0.041 0.959 48 H 0.081 0.919 49 H 0.083 0.917 50 H 0.082 0.918 51 H 0.089 0.911 52 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.192 -22.302 9.841 26.823 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.032 4.032 3 N -0.110 5.110 4 C -0.088 4.088 5 C -0.137 4.137 6 C -0.211 4.211 7 C -0.264 4.264 8 C 0.381 3.619 9 O -0.472 6.472 10 N -0.332 5.332 11 C -0.009 4.009 12 C -0.178 4.178 13 C 0.072 3.928 14 H 0.066 0.934 15 N -0.370 5.370 16 C -0.362 4.362 17 H 0.095 0.905 18 C -0.269 4.269 19 N -0.623 5.623 20 Si 0.798 3.202 21 H -0.217 1.217 22 H -0.227 1.227 23 H -0.193 1.193 24 C -0.118 4.118 25 H 0.069 0.931 26 C -0.187 4.187 27 C 0.004 3.996 28 C -0.038 4.038 29 C -0.140 4.140 30 H 0.066 0.934 31 H 0.116 0.884 32 H 0.077 0.923 33 H 0.120 0.880 34 H 0.133 0.867 35 H 0.098 0.902 36 H 0.108 0.892 37 H 0.100 0.900 38 H 0.170 0.830 39 H 0.123 0.877 40 H 0.099 0.901 41 H 0.057 0.943 42 H 0.083 0.917 43 H 0.202 0.798 44 H 0.057 0.943 45 H 0.078 0.922 46 H 0.083 0.917 47 H 0.060 0.940 48 H 0.100 0.900 49 H 0.101 0.899 50 H 0.100 0.900 51 H 0.108 0.892 52 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 11.431 -22.627 9.568 27.096 hybrid contribution -1.059 1.128 -0.304 1.577 sum 10.372 -21.499 9.264 25.605 Atomic orbital electron populations 1.22148 0.93777 1.04147 1.02375 1.22183 0.95948 0.78914 1.06153 1.43804 1.50220 1.12791 1.04169 1.20700 1.06022 0.92025 0.90095 1.20431 1.03722 1.02271 0.87306 1.21865 1.09274 0.98294 0.91650 1.20057 1.17132 0.94662 0.94554 1.17869 0.78932 0.82249 0.82833 1.90691 1.37334 1.84369 1.34822 1.48057 1.49329 1.08638 1.27189 1.22002 0.89753 1.02164 0.86954 1.22436 0.96898 0.98130 1.00363 1.20404 0.86802 0.92139 0.93408 0.93379 1.42586 1.25621 1.50055 1.18735 1.19607 1.03309 1.15212 0.98104 0.90492 1.25490 0.99681 1.03211 0.98475 1.69824 1.22994 1.48468 1.20997 0.85205 0.77126 0.79036 0.78811 1.21698 1.22654 1.19266 1.21672 0.95839 0.97385 0.96934 0.93137 1.21571 1.01175 0.96661 0.99247 1.21678 0.95826 0.88212 0.93838 1.20242 1.02631 0.90723 0.90201 1.20366 1.03278 1.01915 0.88481 0.93383 0.88375 0.92297 0.88028 0.86729 0.90184 0.89202 0.90036 0.83015 0.87679 0.90126 0.94328 0.91708 0.79835 0.94286 0.92236 0.91690 0.93976 0.90046 0.89904 0.89957 0.89249 0.92232 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.62 10.24 71.98 0.74 -0.88 16 2 C 0.09 0.88 6.09 86.38 0.53 1.40 16 3 N -0.43 -7.97 2.69 -495.51 -1.33 -9.30 16 4 C 0.02 0.38 6.85 40.98 0.28 0.66 16 5 C -0.08 -0.82 10.06 71.24 0.72 -0.11 16 6 C -0.19 -4.37 8.61 23.62 0.20 -4.17 16 7 C -0.25 -7.35 5.26 -19.04 -0.10 -7.45 16 8 C 0.59 20.09 7.19 86.62 0.62 20.71 16 9 O -0.59 -23.39 16.39 -4.12 -0.07 -23.46 16 10 N -0.60 -19.06 2.97 -822.12 -2.44 -21.50 16 11 C 0.11 3.29 5.96 86.36 0.51 3.80 16 12 C -0.14 -4.92 5.66 30.67 0.17 -4.75 16 13 C 0.18 7.17 2.19 45.02 0.10 7.26 16 14 H 0.05 1.91 8.08 -2.39 -0.02 1.89 16 15 N -0.73 -36.66 4.41 -322.82 -1.42 -38.08 16 16 C -0.23 -12.59 9.93 84.03 0.83 -11.76 16 17 H 0.08 4.02 7.83 -2.91 -0.02 3.99 16 18 C -0.08 -4.38 5.50 84.86 0.47 -3.92 16 19 N -0.97 -59.78 13.06 21.65 0.28 -59.49 16 20 Si 0.97 46.05 29.55 68.60 2.03 48.08 16 21 H -0.29 -13.61 7.11 99.48 0.71 -12.90 16 22 H -0.30 -14.48 7.11 99.48 0.71 -13.77 16 23 H -0.27 -11.94 7.11 99.48 0.71 -11.24 16 24 C -0.10 -3.47 2.47 -10.57 -0.03 -3.50 16 25 H 0.05 1.96 8.14 -2.39 -0.02 1.94 16 26 C -0.13 -4.40 9.03 71.98 0.65 -3.75 16 27 C 0.13 4.00 5.74 86.51 0.50 4.50 16 28 C 0.08 1.94 6.89 41.78 0.29 2.23 16 29 C -0.08 -1.79 9.48 71.24 0.68 -1.11 16 30 H 0.05 0.64 8.12 -2.39 -0.02 0.62 16 31 H 0.10 0.50 8.14 -2.39 -0.02 0.48 16 32 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 33 H 0.10 0.80 7.50 -2.39 -0.02 0.78 16 34 H 0.11 0.62 6.90 -2.39 -0.02 0.60 16 35 H 0.08 0.75 8.14 -2.39 -0.02 0.73 16 36 H 0.09 0.78 8.14 -2.39 -0.02 0.76 16 37 H 0.08 0.53 6.94 -2.39 -0.02 0.51 16 38 H 0.15 3.13 7.70 -2.91 -0.02 3.11 16 39 H 0.11 2.82 4.49 -2.39 -0.01 2.81 16 40 H 0.08 2.05 8.14 -2.39 -0.02 2.03 16 41 H 0.04 1.51 8.14 -2.39 -0.02 1.49 16 42 H 0.06 2.42 8.14 -2.39 -0.02 2.40 16 43 H 0.37 20.37 7.50 -92.71 -0.70 19.67 16 44 H 0.25 14.90 8.31 -92.71 -0.77 14.13 16 45 H 0.06 1.91 8.14 -2.39 -0.02 1.89 16 46 H 0.06 1.91 8.14 -2.39 -0.02 1.89 16 47 H 0.04 1.70 7.36 -2.39 -0.02 1.68 16 48 H 0.08 2.29 8.14 -2.39 -0.02 2.27 16 49 H 0.08 2.72 7.03 -2.39 -0.02 2.70 16 50 H 0.08 1.66 8.14 -2.39 -0.02 1.64 16 51 H 0.09 1.39 7.57 -2.39 -0.02 1.38 16 52 H 0.06 1.57 7.93 -2.39 -0.02 1.55 16 Total: -1.00 -73.30 408.47 4.41 -68.89 By element: Atomic # 1 Polarization: 35.49 SS G_CDS: 0.20 Total: 35.69 kcal Atomic # 6 Polarization: -7.98 SS G_CDS: 7.16 Total: -0.82 kcal Atomic # 7 Polarization: -123.47 SS G_CDS: -4.91 Total: -128.38 kcal Atomic # 8 Polarization: -23.39 SS G_CDS: -0.07 Total: -23.46 kcal Atomic # 14 Polarization: 46.05 SS G_CDS: 2.03 Total: 48.08 kcal Total: -73.30 4.41 -68.89 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036103513.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.935 kcal (2) G-P(sol) polarization free energy of solvation -73.301 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.366 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.413 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.888 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.953 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds