Wall clock time and date at job start Tue Mar 31 2020 18:00:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46505 * 109.47221 * 2 1 4 4 C 1.36443 * 124.85388 * 269.96452 * 3 2 1 5 5 C 1.50700 * 125.57130 * 0.02928 * 4 3 2 6 6 C 1.34488 * 108.85884 * 180.02562 * 4 3 2 7 7 C 1.46684 * 106.32875 * 359.97438 * 6 4 3 8 8 C 1.47264 * 126.93751 * 180.02562 * 7 6 4 9 9 O 1.21633 * 119.99737 * 219.33460 * 8 7 6 10 10 N 1.34770 * 120.00158 * 39.33960 * 8 7 6 11 11 C 1.46925 * 120.63274 * 5.11838 * 10 8 7 12 12 C 1.53625 * 108.54256 * 126.37115 * 11 10 8 13 13 C 1.53036 * 109.24221 * 54.85771 * 12 11 10 14 14 H 1.08994 * 109.44695 * 58.52550 * 13 12 11 15 15 N 1.46507 * 109.45924 * 178.49021 * 13 12 11 16 16 C 1.36927 * 120.00059 * 275.06843 * 15 13 12 17 17 H 1.08003 * 120.00053 * 359.97438 * 16 15 13 18 18 C 1.38807 * 120.00099 * 180.02562 * 16 15 13 19 19 N 1.31615 * 120.00258 * 359.97438 * 18 16 15 20 20 Si 1.86799 * 120.00203 * 180.02562 * 18 16 15 21 21 H 1.48500 * 109.47432 * 60.00033 * 20 18 16 22 22 H 1.48503 * 109.47253 * 179.97438 * 20 18 16 23 23 H 1.48500 * 109.47187 * 300.00042 * 20 18 16 24 24 C 1.53045 * 109.53915 * 298.51120 * 13 12 11 25 25 H 1.09004 * 109.51984 * 301.39547 * 24 13 12 26 26 C 1.53005 * 109.49651 * 181.31792 * 24 13 12 27 27 C 1.46932 * 120.62963 * 185.40161 * 10 8 7 28 28 C 1.34659 * 124.84614 * 90.00228 * 3 2 1 29 29 C 1.50695 * 125.80482 * 0.22572 * 28 3 2 30 30 H 1.09001 * 109.47289 * 59.99651 * 1 2 3 31 31 H 1.08995 * 109.47297 * 179.97438 * 1 2 3 32 32 H 1.08996 * 109.46975 * 299.99953 * 1 2 3 33 33 H 1.09009 * 109.46890 * 240.00406 * 2 1 3 34 34 H 1.09001 * 109.47289 * 120.00349 * 2 1 3 35 35 H 1.09000 * 109.47540 * 270.03233 * 5 4 3 36 36 H 1.09002 * 109.47303 * 30.03011 * 5 4 3 37 37 H 1.08998 * 109.47333 * 150.02555 * 5 4 3 38 38 H 1.07995 * 126.83381 * 179.97438 * 6 4 3 39 39 H 1.08996 * 109.58987 * 246.20437 * 11 10 8 40 40 H 1.09005 * 109.58321 * 6.63093 * 11 10 8 41 41 H 1.09006 * 109.63422 * 294.86604 * 12 11 10 42 42 H 1.08997 * 109.46043 * 174.74477 * 12 11 10 43 43 H 0.97002 * 119.99442 * 95.06659 * 15 13 12 44 44 H 0.97005 * 120.00659 * 180.02562 * 19 18 16 45 45 H 1.08998 * 109.46569 * 300.15905 * 26 24 13 46 46 H 1.09000 * 109.47253 * 60.16180 * 26 24 13 47 47 H 1.08996 * 109.46852 * 180.16266 * 26 24 13 48 48 H 1.08999 * 109.58813 * 353.37201 * 27 10 8 49 49 H 1.09002 * 109.58496 * 113.65424 * 27 10 8 50 50 H 1.09003 * 109.47350 * 269.72162 * 29 28 3 51 51 H 1.09006 * 109.46979 * 29.71612 * 29 28 3 52 52 H 1.09005 * 109.47088 * 149.71684 * 29 28 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3813 0.0000 4 6 2.2790 2.1162 -1.1197 5 6 2.1109 1.6401 -2.5396 6 6 2.7103 3.3349 -0.7491 7 6 2.7120 3.3434 0.7177 8 6 3.1055 4.4582 1.5958 9 8 3.7350 4.2381 2.6130 10 7 2.7680 5.7222 1.2724 11 6 1.9135 5.9945 0.1087 12 6 0.7235 6.8516 0.5662 13 6 1.2464 8.1066 1.2688 14 1 1.8858 8.6653 0.5854 15 7 0.1160 8.9452 1.6754 16 6 -0.4346 9.8297 0.7870 17 1 -0.0353 9.9095 -0.2134 18 6 -1.5053 10.6247 1.1723 19 7 -1.9916 10.5279 2.3915 20 14 -2.2569 11.8309 -0.0399 21 1 -2.7666 11.0915 -1.2226 22 1 -3.3783 12.5540 0.6121 23 1 -1.2239 12.8058 -0.4731 24 6 2.0523 7.7025 2.5056 25 1 1.4206 7.1225 3.1784 26 6 2.5470 8.9587 3.2256 27 6 3.2527 6.8547 2.0734 28 6 2.2749 2.1066 1.1051 29 6 2.1131 1.6343 2.5270 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 -0.3633 0.5138 0.8900 33 1 1.8933 -0.5138 -0.8901 34 1 1.8934 -0.5139 0.8900 35 1 3.0389 1.1818 -2.8814 36 1 1.3057 0.9067 -2.5840 37 1 1.8664 2.4872 -3.1803 38 1 2.9980 4.1459 -1.4016 39 1 2.4857 6.5326 -0.6470 40 1 1.5503 5.0541 -0.3059 41 1 0.1040 6.2794 1.2569 42 1 0.1297 7.1409 -0.3008 43 1 -0.2423 8.8737 2.5740 44 1 -2.7401 11.0831 2.6607 45 1 3.1776 9.5388 2.5520 46 1 1.6925 9.5616 3.5330 47 1 3.1232 8.6703 4.1047 48 1 3.7735 6.4821 2.9554 49 1 3.9339 7.4601 1.4754 50 1 1.1056 1.8643 2.8738 51 1 2.2761 0.5575 2.5729 52 1 2.8404 2.1394 3.1626 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036103514.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:00:53 Heat of formation + Delta-G solvation = 12.277107 kcal Electronic energy + Delta-G solvation = -29887.505426 eV Core-core repulsion = 26080.561735 eV Total energy + Delta-G solvation = -3806.943691 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 333.216 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.65543 -39.54522 -37.35803 -34.60166 -34.22583 -32.83945 -32.69478 -31.33177 -29.69489 -29.34875 -29.10094 -26.48470 -25.32581 -24.36775 -23.79476 -22.71680 -21.54368 -21.27709 -19.93019 -19.30166 -17.89401 -17.04153 -16.88426 -16.22953 -15.65060 -15.39205 -14.88515 -14.70108 -14.59810 -13.96923 -13.82964 -13.60314 -13.51003 -13.40904 -13.35466 -13.16615 -13.12507 -12.80266 -12.66963 -12.45322 -12.33121 -12.29105 -12.08165 -11.79694 -11.64322 -11.57244 -11.43538 -11.37531 -11.06558 -10.87375 -10.70998 -10.50492 -10.29058 -10.18699 -9.67922 -9.55495 -9.52069 -8.86006 -8.56150 -8.25089 -7.99278 -6.90182 -5.72872 -3.00901 1.88212 2.33713 2.61083 3.32576 3.45387 3.49981 3.50861 3.60120 4.28230 4.47774 4.59462 4.61722 4.71649 4.76602 4.96544 5.01189 5.14469 5.18556 5.24809 5.29281 5.32040 5.39730 5.44862 5.49857 5.54384 5.56503 5.60285 5.64990 5.70038 5.80096 5.81888 5.87290 5.89710 5.93138 6.10574 6.16357 6.20859 6.28395 6.43740 6.51987 6.55246 6.66686 6.76225 6.82124 6.92344 7.02337 7.07831 7.17087 7.17958 7.72402 7.80255 8.45661 8.55451 9.56749 10.15634 10.50733 11.49764 Molecular weight = 333.22amu Principal moments of inertia in cm(-1) A = 0.013775 B = 0.002996 C = 0.002717 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2032.176580 B = 9343.902761 C =10301.791176 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.095 3.905 3 N -0.438 5.438 4 C 0.009 3.991 5 C -0.083 4.083 6 C -0.163 4.163 7 C -0.221 4.221 8 C 0.593 3.407 9 O -0.559 6.559 10 N -0.600 5.600 11 C 0.103 3.897 12 C -0.149 4.149 13 C 0.184 3.816 14 H 0.047 0.953 15 N -0.721 5.721 16 C -0.235 4.235 17 H 0.069 0.931 18 C -0.014 4.014 19 N -0.934 5.934 20 Si 0.905 3.095 21 H -0.287 1.287 22 H -0.292 1.292 23 H -0.287 1.287 24 C -0.109 4.109 25 H 0.068 0.932 26 C -0.135 4.135 27 C 0.121 3.879 28 C 0.093 3.907 29 C -0.096 4.096 30 H 0.064 0.936 31 H 0.074 0.926 32 H 0.065 0.935 33 H 0.089 0.911 34 H 0.090 0.910 35 H 0.068 0.932 36 H 0.062 0.938 37 H 0.081 0.919 38 H 0.145 0.855 39 H 0.061 0.939 40 H 0.091 0.909 41 H 0.057 0.943 42 H 0.072 0.928 43 H 0.383 0.617 44 H 0.255 0.745 45 H 0.050 0.950 46 H 0.072 0.928 47 H 0.042 0.958 48 H 0.087 0.913 49 H 0.063 0.937 50 H 0.073 0.927 51 H 0.063 0.937 52 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.986 -22.508 -6.671 25.137 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.026 4.026 3 N -0.116 5.116 4 C -0.098 4.098 5 C -0.140 4.140 6 C -0.187 4.187 7 C -0.231 4.231 8 C 0.383 3.617 9 O -0.439 6.439 10 N -0.331 5.331 11 C -0.020 4.020 12 C -0.190 4.190 13 C 0.074 3.926 14 H 0.064 0.936 15 N -0.361 5.361 16 C -0.367 4.367 17 H 0.087 0.913 18 C -0.210 4.210 19 N -0.582 5.582 20 Si 0.736 3.264 21 H -0.214 1.214 22 H -0.218 1.218 23 H -0.213 1.213 24 C -0.129 4.129 25 H 0.087 0.913 26 C -0.193 4.193 27 C -0.001 4.001 28 C -0.022 4.022 29 C -0.153 4.153 30 H 0.083 0.917 31 H 0.092 0.908 32 H 0.084 0.916 33 H 0.108 0.892 34 H 0.108 0.892 35 H 0.087 0.913 36 H 0.081 0.919 37 H 0.100 0.900 38 H 0.163 0.837 39 H 0.079 0.921 40 H 0.109 0.891 41 H 0.076 0.924 42 H 0.091 0.909 43 H 0.217 0.783 44 H 0.065 0.935 45 H 0.069 0.931 46 H 0.091 0.909 47 H 0.061 0.939 48 H 0.105 0.895 49 H 0.081 0.919 50 H 0.092 0.908 51 H 0.082 0.918 52 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 9.133 -22.809 -6.303 25.365 hybrid contribution -0.795 0.721 -0.547 1.205 sum 8.338 -22.088 -6.850 24.583 Atomic orbital electron populations 1.22170 0.94153 1.02956 1.03558 1.21840 0.95713 0.80813 1.04265 1.43559 1.51244 1.11747 1.05028 1.20151 1.08479 0.92649 0.88569 1.20312 1.01884 1.02016 0.89799 1.21780 1.07302 0.96734 0.92865 1.20030 1.15236 0.94436 0.93408 1.17429 0.78361 0.81873 0.84021 1.90703 1.42110 1.84262 1.26846 1.47947 1.49908 1.05495 1.29783 1.22140 0.91874 1.00879 0.87080 1.22728 0.96551 0.98124 1.01632 1.20204 0.89447 0.90069 0.92902 0.93551 1.42409 1.35436 1.43973 1.14303 1.19181 1.10504 1.12835 0.94156 0.91326 1.24712 0.99229 1.00437 0.96578 1.69649 1.27953 1.43253 1.17350 0.86307 0.78663 0.81181 0.80264 1.21383 1.21808 1.21339 1.21725 0.96291 0.96341 0.98527 0.91339 1.21657 1.01662 0.97092 0.98928 1.21665 0.96153 0.86515 0.95812 1.20106 1.02256 0.90845 0.88989 1.20531 1.03880 1.00963 0.89905 0.91692 0.90753 0.91620 0.89233 0.89204 0.91280 0.91918 0.90002 0.83701 0.92095 0.89129 0.92413 0.90924 0.78273 0.93542 0.93126 0.90861 0.93877 0.89477 0.91855 0.90805 0.91828 0.88361 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.01 10.24 37.16 0.38 -0.63 16 2 C 0.10 0.61 6.09 -4.04 -0.02 0.58 16 3 N -0.44 -4.43 2.69 -107.96 -0.29 -4.72 16 4 C 0.01 0.10 6.85 -81.87 -0.56 -0.47 16 5 C -0.08 -0.56 9.81 36.01 0.35 -0.21 16 6 C -0.16 -1.99 8.57 -37.50 -0.32 -2.31 16 7 C -0.22 -3.21 5.34 -103.35 -0.55 -3.76 16 8 C 0.59 9.98 7.45 -12.60 -0.09 9.89 16 9 O -0.56 -10.72 15.02 5.25 0.08 -10.64 16 10 N -0.60 -9.59 2.97 -173.83 -0.52 -10.10 16 11 C 0.10 1.54 5.58 -3.49 -0.02 1.52 16 12 C -0.15 -2.69 5.67 -26.39 -0.15 -2.84 16 13 C 0.18 3.64 2.19 -67.88 -0.15 3.49 16 14 H 0.05 0.94 8.08 -51.93 -0.42 0.52 16 15 N -0.72 -17.78 4.41 -53.39 -0.24 -18.01 16 16 C -0.24 -6.42 9.93 -15.07 -0.15 -6.57 16 17 H 0.07 1.82 7.83 -52.48 -0.41 1.40 16 18 C -0.01 -0.39 5.50 -17.43 -0.10 -0.49 16 19 N -0.93 -28.10 13.06 55.49 0.72 -27.37 16 20 Si 0.90 22.30 29.55 -169.99 -5.02 17.27 16 21 H -0.29 -6.96 7.11 56.52 0.40 -6.55 16 22 H -0.29 -7.30 7.11 56.52 0.40 -6.89 16 23 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 24 C -0.11 -1.92 2.46 -90.50 -0.22 -2.14 16 25 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 26 C -0.14 -2.32 9.02 37.16 0.34 -1.99 16 27 C 0.12 1.94 5.72 -3.71 -0.02 1.92 16 28 C 0.09 1.17 6.89 -81.89 -0.56 0.61 16 29 C -0.10 -1.04 9.86 36.00 0.36 -0.68 16 30 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 31 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16 32 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 33 H 0.09 0.43 7.52 -51.92 -0.39 0.03 16 34 H 0.09 0.48 6.87 -51.93 -0.36 0.12 16 35 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 36 H 0.06 0.35 7.60 -51.93 -0.39 -0.04 16 37 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 38 H 0.15 1.60 7.44 -52.49 -0.39 1.21 16 39 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 40 H 0.09 1.26 4.69 -51.93 -0.24 1.02 16 41 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 42 H 0.07 1.37 8.14 -51.93 -0.42 0.95 16 43 H 0.38 10.20 7.50 -40.82 -0.31 9.90 16 44 H 0.25 7.47 8.31 -40.82 -0.34 7.13 16 45 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 46 H 0.07 1.45 7.36 -51.93 -0.38 1.07 16 47 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 48 H 0.09 1.44 7.00 -51.93 -0.36 1.07 16 49 H 0.06 0.94 8.14 -51.93 -0.42 0.51 16 50 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 51 H 0.06 0.51 6.91 -51.93 -0.36 0.15 16 52 H 0.10 1.27 6.66 -51.93 -0.35 0.93 16 LS Contribution 405.80 15.07 6.12 6.12 Total: -1.00 -32.97 405.80 -9.64 -42.61 By element: Atomic # 1 Polarization: 17.92 SS G_CDS: -8.99 Total: 8.93 kcal Atomic # 6 Polarization: -2.57 SS G_CDS: -1.50 Total: -4.07 kcal Atomic # 7 Polarization: -59.90 SS G_CDS: -0.32 Total: -60.21 kcal Atomic # 8 Polarization: -10.72 SS G_CDS: 0.08 Total: -10.64 kcal Atomic # 14 Polarization: 22.30 SS G_CDS: -5.02 Total: 17.27 kcal Total LS contribution 6.12 Total: 6.12 kcal Total: -32.97 -9.64 -42.61 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036103514.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.885 kcal (2) G-P(sol) polarization free energy of solvation -32.968 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.916 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.639 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.607 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.277 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds