Wall clock time and date at job start Tue Mar 31 2020 18:00:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46505 * 109.47221 * 2 1 4 4 C 1.36443 * 124.85388 * 269.96452 * 3 2 1 5 5 C 1.50700 * 125.57130 * 0.02928 * 4 3 2 6 6 C 1.34488 * 108.85884 * 180.02562 * 4 3 2 7 7 C 1.46684 * 106.32875 * 359.97438 * 6 4 3 8 8 C 1.47264 * 126.93751 * 180.02562 * 7 6 4 9 9 O 1.21633 * 119.99737 * 219.33460 * 8 7 6 10 10 N 1.34770 * 120.00158 * 39.33960 * 8 7 6 11 11 C 1.46925 * 120.63274 * 5.11838 * 10 8 7 12 12 C 1.53625 * 108.54256 * 126.37115 * 11 10 8 13 13 C 1.53036 * 109.24221 * 54.85771 * 12 11 10 14 14 H 1.08994 * 109.44695 * 58.52550 * 13 12 11 15 15 N 1.46507 * 109.45924 * 178.49021 * 13 12 11 16 16 C 1.36927 * 120.00059 * 275.06843 * 15 13 12 17 17 H 1.08003 * 120.00053 * 359.97438 * 16 15 13 18 18 C 1.38807 * 120.00099 * 180.02562 * 16 15 13 19 19 N 1.31615 * 120.00258 * 359.97438 * 18 16 15 20 20 Si 1.86799 * 120.00203 * 180.02562 * 18 16 15 21 21 H 1.48500 * 109.47432 * 60.00033 * 20 18 16 22 22 H 1.48503 * 109.47253 * 179.97438 * 20 18 16 23 23 H 1.48500 * 109.47187 * 300.00042 * 20 18 16 24 24 C 1.53045 * 109.53915 * 298.51120 * 13 12 11 25 25 H 1.09004 * 109.51984 * 301.39547 * 24 13 12 26 26 C 1.53005 * 109.49651 * 181.31792 * 24 13 12 27 27 C 1.46932 * 120.62963 * 185.40161 * 10 8 7 28 28 C 1.34659 * 124.84614 * 90.00228 * 3 2 1 29 29 C 1.50695 * 125.80482 * 0.22572 * 28 3 2 30 30 H 1.09001 * 109.47289 * 59.99651 * 1 2 3 31 31 H 1.08995 * 109.47297 * 179.97438 * 1 2 3 32 32 H 1.08996 * 109.46975 * 299.99953 * 1 2 3 33 33 H 1.09009 * 109.46890 * 240.00406 * 2 1 3 34 34 H 1.09001 * 109.47289 * 120.00349 * 2 1 3 35 35 H 1.09000 * 109.47540 * 270.03233 * 5 4 3 36 36 H 1.09002 * 109.47303 * 30.03011 * 5 4 3 37 37 H 1.08998 * 109.47333 * 150.02555 * 5 4 3 38 38 H 1.07995 * 126.83381 * 179.97438 * 6 4 3 39 39 H 1.08996 * 109.58987 * 246.20437 * 11 10 8 40 40 H 1.09005 * 109.58321 * 6.63093 * 11 10 8 41 41 H 1.09006 * 109.63422 * 294.86604 * 12 11 10 42 42 H 1.08997 * 109.46043 * 174.74477 * 12 11 10 43 43 H 0.97002 * 119.99442 * 95.06659 * 15 13 12 44 44 H 0.97005 * 120.00659 * 180.02562 * 19 18 16 45 45 H 1.08998 * 109.46569 * 300.15905 * 26 24 13 46 46 H 1.09000 * 109.47253 * 60.16180 * 26 24 13 47 47 H 1.08996 * 109.46852 * 180.16266 * 26 24 13 48 48 H 1.08999 * 109.58813 * 353.37201 * 27 10 8 49 49 H 1.09002 * 109.58496 * 113.65424 * 27 10 8 50 50 H 1.09003 * 109.47350 * 269.72162 * 29 28 3 51 51 H 1.09006 * 109.46979 * 29.71612 * 29 28 3 52 52 H 1.09005 * 109.47088 * 149.71684 * 29 28 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3813 0.0000 4 6 2.2790 2.1162 -1.1197 5 6 2.1109 1.6401 -2.5396 6 6 2.7103 3.3349 -0.7491 7 6 2.7120 3.3434 0.7177 8 6 3.1055 4.4582 1.5958 9 8 3.7350 4.2381 2.6130 10 7 2.7680 5.7222 1.2724 11 6 1.9135 5.9945 0.1087 12 6 0.7235 6.8516 0.5662 13 6 1.2464 8.1066 1.2688 14 1 1.8858 8.6653 0.5854 15 7 0.1160 8.9452 1.6754 16 6 -0.4346 9.8297 0.7870 17 1 -0.0353 9.9095 -0.2134 18 6 -1.5053 10.6247 1.1723 19 7 -1.9916 10.5279 2.3915 20 14 -2.2569 11.8309 -0.0399 21 1 -2.7666 11.0915 -1.2226 22 1 -3.3783 12.5540 0.6121 23 1 -1.2239 12.8058 -0.4731 24 6 2.0523 7.7025 2.5056 25 1 1.4206 7.1225 3.1784 26 6 2.5470 8.9587 3.2256 27 6 3.2527 6.8547 2.0734 28 6 2.2749 2.1066 1.1051 29 6 2.1131 1.6343 2.5270 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 -0.3633 0.5138 0.8900 33 1 1.8933 -0.5138 -0.8901 34 1 1.8934 -0.5139 0.8900 35 1 3.0389 1.1818 -2.8814 36 1 1.3057 0.9067 -2.5840 37 1 1.8664 2.4872 -3.1803 38 1 2.9980 4.1459 -1.4016 39 1 2.4857 6.5326 -0.6470 40 1 1.5503 5.0541 -0.3059 41 1 0.1040 6.2794 1.2569 42 1 0.1297 7.1409 -0.3008 43 1 -0.2423 8.8737 2.5740 44 1 -2.7401 11.0831 2.6607 45 1 3.1776 9.5388 2.5520 46 1 1.6925 9.5616 3.5330 47 1 3.1232 8.6703 4.1047 48 1 3.7735 6.4821 2.9554 49 1 3.9339 7.4601 1.4754 50 1 1.1056 1.8643 2.8738 51 1 2.2761 0.5575 2.5729 52 1 2.8404 2.1394 3.1626 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001036103514.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:00:52 Heat of formation + Delta-G solvation = -6.119173 kcal Electronic energy + Delta-G solvation = -29888.303148 eV Core-core repulsion = 26080.561735 eV Total energy + Delta-G solvation = -3807.741414 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 333.216 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -42.51602 -40.84848 -38.82740 -36.13641 -35.11241 -34.27110 -33.62259 -33.00968 -31.01420 -30.41081 -30.01053 -27.72110 -26.86105 -25.61006 -24.57610 -24.14511 -23.04528 -22.30771 -21.15376 -20.53283 -19.11602 -18.83771 -17.97498 -17.18096 -16.82402 -16.70381 -16.21317 -15.85621 -15.66887 -15.46724 -15.39683 -14.92188 -14.65444 -14.49325 -14.27267 -14.07986 -14.06877 -13.78881 -13.71070 -13.63152 -13.40728 -13.13883 -13.08991 -12.94217 -12.88312 -12.80105 -12.68892 -12.47390 -12.38968 -12.23981 -12.18586 -12.10292 -12.01829 -11.82323 -11.62724 -11.14069 -10.92785 -10.76938 -9.64505 -9.40863 -8.94035 -8.88259 -7.89307 -5.17152 0.87332 1.46512 1.49100 1.51781 1.57558 1.81805 2.16039 2.42296 2.59697 3.43507 3.67447 3.78905 3.81131 3.82606 3.92400 4.01293 4.11481 4.12266 4.16818 4.24818 4.36416 4.39602 4.40231 4.49955 4.54304 4.63032 4.65838 4.70964 4.76799 4.81415 4.83540 4.85056 4.85574 4.86171 4.98027 5.00778 5.05297 5.06163 5.14426 5.20096 5.26572 5.29459 5.35997 5.42216 5.53138 5.58069 5.69251 5.87824 6.19143 6.31624 6.41839 6.54582 7.27992 7.37980 8.13886 8.38224 9.34254 Molecular weight = 333.22amu Principal moments of inertia in cm(-1) A = 0.013775 B = 0.002996 C = 0.002717 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2032.176580 B = 9343.902761 C =10301.791176 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.087 3.913 3 N -0.433 5.433 4 C 0.018 3.982 5 C -0.081 4.081 6 C -0.184 4.184 7 C -0.258 4.258 8 C 0.589 3.411 9 O -0.592 6.592 10 N -0.603 5.603 11 C 0.116 3.884 12 C -0.139 4.139 13 C 0.181 3.819 14 H 0.049 0.951 15 N -0.731 5.731 16 C -0.232 4.232 17 H 0.078 0.922 18 C -0.077 4.077 19 N -0.972 5.972 20 Si 0.970 3.030 21 H -0.278 1.278 22 H -0.300 1.300 23 H -0.278 1.278 24 C -0.099 4.099 25 H 0.048 0.952 26 C -0.128 4.128 27 C 0.128 3.872 28 C 0.085 3.915 29 C -0.092 4.092 30 H 0.058 0.942 31 H 0.098 0.902 32 H 0.047 0.953 33 H 0.114 0.886 34 H 0.102 0.898 35 H 0.083 0.917 36 H 0.078 0.922 37 H 0.088 0.912 38 H 0.153 0.847 39 H 0.082 0.918 40 H 0.104 0.896 41 H 0.037 0.963 42 H 0.065 0.935 43 H 0.370 0.630 44 H 0.248 0.752 45 H 0.059 0.941 46 H 0.041 0.959 47 H 0.064 0.936 48 H 0.082 0.918 49 H 0.082 0.918 50 H 0.074 0.926 51 H 0.092 0.908 52 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.705 -24.532 -9.272 27.964 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.032 4.032 3 N -0.109 5.109 4 C -0.091 4.091 5 C -0.138 4.138 6 C -0.207 4.207 7 C -0.268 4.268 8 C 0.381 3.619 9 O -0.474 6.474 10 N -0.333 5.333 11 C -0.007 4.007 12 C -0.180 4.180 13 C 0.073 3.927 14 H 0.067 0.933 15 N -0.370 5.370 16 C -0.364 4.364 17 H 0.096 0.904 18 C -0.269 4.269 19 N -0.624 5.624 20 Si 0.799 3.201 21 H -0.204 1.204 22 H -0.227 1.227 23 H -0.204 1.204 24 C -0.119 4.119 25 H 0.067 0.933 26 C -0.186 4.186 27 C 0.005 3.995 28 C -0.032 4.032 29 C -0.149 4.149 30 H 0.077 0.923 31 H 0.116 0.884 32 H 0.066 0.934 33 H 0.132 0.868 34 H 0.120 0.880 35 H 0.102 0.898 36 H 0.097 0.903 37 H 0.107 0.893 38 H 0.170 0.830 39 H 0.100 0.900 40 H 0.122 0.878 41 H 0.056 0.944 42 H 0.083 0.917 43 H 0.201 0.799 44 H 0.057 0.943 45 H 0.078 0.922 46 H 0.060 0.940 47 H 0.083 0.917 48 H 0.101 0.899 49 H 0.101 0.899 50 H 0.093 0.907 51 H 0.111 0.889 52 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 9.879 -24.871 -8.956 28.220 hybrid contribution -0.979 1.229 0.261 1.593 sum 8.900 -23.641 -8.695 26.716 Atomic orbital electron populations 1.22143 0.93733 1.04158 1.02379 1.22194 0.95993 0.78906 1.06151 1.43843 1.50037 1.12859 1.04208 1.20709 1.06255 0.92020 0.90077 1.20433 1.03251 1.02796 0.87326 1.21922 1.08846 0.98198 0.91778 1.20060 1.17724 0.94591 0.94448 1.17868 0.77738 0.82474 0.83868 1.90671 1.43655 1.84729 1.28387 1.48012 1.49901 1.05443 1.29962 1.22094 0.90589 1.01070 0.86904 1.22531 0.97502 0.97393 1.00528 1.20403 0.88275 0.90087 0.93950 0.93288 1.42585 1.36503 1.44518 1.13409 1.19578 1.09884 1.12274 0.94622 0.90449 1.25503 1.00350 1.02800 0.98252 1.69822 1.28626 1.44564 1.19338 0.85264 0.77555 0.79045 0.78225 1.20395 1.22666 1.20433 1.21590 0.96459 0.96603 0.97213 0.93338 1.21567 1.00678 0.96394 0.99982 1.21580 0.95299 0.86480 0.96181 1.20303 1.01945 0.90757 0.90213 1.20487 1.03079 1.02516 0.88802 0.92283 0.88373 0.93356 0.86808 0.87952 0.89830 0.90276 0.89303 0.82971 0.89984 0.87810 0.94449 0.91664 0.79875 0.94278 0.92172 0.94030 0.91728 0.89948 0.89937 0.90705 0.88886 0.90891 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.52 10.24 71.98 0.74 -0.78 16 2 C 0.09 0.84 6.09 86.38 0.53 1.36 16 3 N -0.43 -7.80 2.69 -495.46 -1.33 -9.13 16 4 C 0.02 0.33 6.85 40.98 0.28 0.61 16 5 C -0.08 -0.81 9.81 71.24 0.70 -0.11 16 6 C -0.18 -4.23 8.57 23.62 0.20 -4.03 16 7 C -0.26 -7.41 5.34 -19.04 -0.10 -7.51 16 8 C 0.59 20.01 7.45 86.62 0.65 20.65 16 9 O -0.59 -23.31 15.02 -4.14 -0.06 -23.38 16 10 N -0.60 -19.08 2.97 -822.11 -2.44 -21.52 16 11 C 0.12 3.33 5.58 86.51 0.48 3.82 16 12 C -0.14 -5.00 5.67 30.82 0.17 -4.82 16 13 C 0.18 7.21 2.19 45.02 0.10 7.31 16 14 H 0.05 1.94 8.08 -2.39 -0.02 1.92 16 15 N -0.73 -36.88 4.41 -322.81 -1.42 -38.30 16 16 C -0.23 -12.71 9.93 84.03 0.83 -11.87 16 17 H 0.08 4.03 7.83 -2.91 -0.02 4.01 16 18 C -0.08 -4.43 5.50 84.86 0.47 -3.96 16 19 N -0.97 -60.10 13.06 21.65 0.28 -59.82 16 20 Si 0.97 46.15 29.55 68.60 2.03 48.18 16 21 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 22 H -0.30 -14.56 7.11 99.48 0.71 -13.85 16 23 H -0.28 -12.73 7.11 99.48 0.71 -12.02 16 24 C -0.10 -3.51 2.46 -10.71 -0.03 -3.54 16 25 H 0.05 1.92 8.14 -2.39 -0.02 1.90 16 26 C -0.13 -4.42 9.02 71.98 0.65 -3.77 16 27 C 0.13 4.02 5.72 86.36 0.49 4.51 16 28 C 0.08 2.07 6.89 41.78 0.29 2.35 16 29 C -0.09 -1.95 9.86 71.23 0.70 -1.25 16 30 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 31 H 0.10 0.44 8.14 -2.39 -0.02 0.42 16 32 H 0.05 0.62 8.14 -2.39 -0.02 0.60 16 33 H 0.11 0.59 7.52 -2.38 -0.02 0.57 16 34 H 0.10 0.75 6.87 -2.39 -0.02 0.73 16 35 H 0.08 0.65 8.14 -2.39 -0.02 0.63 16 36 H 0.08 0.56 7.60 -2.39 -0.02 0.54 16 37 H 0.09 0.81 8.14 -2.39 -0.02 0.79 16 38 H 0.15 3.10 7.44 -2.91 -0.02 3.08 16 39 H 0.08 2.05 8.14 -2.39 -0.02 2.03 16 40 H 0.10 2.78 4.69 -2.38 -0.01 2.77 16 41 H 0.04 1.48 8.14 -2.38 -0.02 1.46 16 42 H 0.06 2.44 8.14 -2.39 -0.02 2.42 16 43 H 0.37 20.50 7.50 -92.71 -0.70 19.81 16 44 H 0.25 15.01 8.31 -92.70 -0.77 14.24 16 45 H 0.06 1.93 8.14 -2.39 -0.02 1.91 16 46 H 0.04 1.69 7.36 -2.39 -0.02 1.67 16 47 H 0.06 1.92 8.14 -2.39 -0.02 1.90 16 48 H 0.08 2.72 7.00 -2.39 -0.02 2.70 16 49 H 0.08 2.30 8.14 -2.39 -0.02 2.28 16 50 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 51 H 0.09 1.35 6.91 -2.38 -0.02 1.33 16 52 H 0.07 1.95 6.66 -2.38 -0.02 1.94 16 Total: -1.00 -73.46 405.80 4.42 -69.05 By element: Atomic # 1 Polarization: 35.74 SS G_CDS: 0.21 Total: 35.95 kcal Atomic # 6 Polarization: -8.19 SS G_CDS: 7.15 Total: -1.04 kcal Atomic # 7 Polarization: -123.85 SS G_CDS: -4.91 Total: -128.76 kcal Atomic # 8 Polarization: -23.31 SS G_CDS: -0.06 Total: -23.38 kcal Atomic # 14 Polarization: 46.15 SS G_CDS: 2.03 Total: 48.18 kcal Total: -73.46 4.42 -69.05 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036103514.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.928 kcal (2) G-P(sol) polarization free energy of solvation -73.464 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.536 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.416 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.047 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.119 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds