Wall clock time and date at job start Tue Mar 31 2020 18:00:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 N 1.46504 * 109.46870 * 2 1 4 4 C 1.36442 * 124.85383 * 269.70030 * 3 2 1 5 5 C 1.50702 * 125.56924 * 0.03219 * 4 3 2 6 6 C 1.34483 * 108.85666 * 179.88272 * 4 3 2 7 7 C 1.46689 * 106.33265 * 0.36292 * 6 4 3 8 8 C 1.47262 * 126.94244 * 179.77486 * 7 6 4 9 9 O 1.21624 * 120.00126 * 215.72849 * 8 7 6 10 10 N 1.34785 * 119.99923 * 35.72943 * 8 7 6 11 11 C 1.46921 * 120.62849 * 5.52204 * 10 8 7 12 12 C 1.53631 * 108.53927 * 126.37090 * 11 10 8 13 13 C 1.53038 * 109.24001 * 54.85451 * 12 11 10 14 14 H 1.09003 * 109.45063 * 58.52656 * 13 12 11 15 15 N 1.46508 * 109.45543 * 178.48812 * 13 12 11 16 16 C 1.36931 * 120.00396 * 275.06475 * 15 13 12 17 17 H 1.08000 * 119.99520 * 0.02562 * 16 15 13 18 18 C 1.38815 * 120.00268 * 179.97438 * 16 15 13 19 19 N 1.31617 * 119.99605 * 0.02562 * 18 16 15 20 20 Si 1.86799 * 120.00018 * 180.02562 * 18 16 15 21 21 H 1.48508 * 109.46875 * 60.00437 * 20 18 16 22 22 H 1.48491 * 109.47030 * 180.02562 * 20 18 16 23 23 H 1.48495 * 109.47366 * 300.00394 * 20 18 16 24 24 C 1.53039 * 109.54050 * 298.50872 * 13 12 11 25 25 C 1.46930 * 120.62734 * 185.80299 * 10 8 7 26 26 H 1.09001 * 109.58368 * 113.80118 * 25 10 8 27 27 C 1.52999 * 109.58590 * 353.37470 * 25 10 8 28 28 C 1.34665 * 124.84747 * 90.00022 * 3 2 1 29 29 C 1.50695 * 125.80212 * 359.96273 * 28 3 2 30 30 H 1.09003 * 109.46395 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.46777 * 60.00124 * 1 2 3 32 32 H 1.08996 * 109.46934 * 299.99533 * 1 2 3 33 33 H 1.08997 * 109.47518 * 119.99932 * 2 1 3 34 34 H 1.09004 * 109.47038 * 240.00771 * 2 1 3 35 35 H 1.08997 * 109.46877 * 90.00681 * 5 4 3 36 36 H 1.09002 * 109.46916 * 209.99936 * 5 4 3 37 37 H 1.08993 * 109.47581 * 330.00304 * 5 4 3 38 38 H 1.08009 * 126.83218 * 180.13811 * 6 4 3 39 39 H 1.08996 * 109.58554 * 246.19960 * 11 10 8 40 40 H 1.08999 * 109.59010 * 6.62886 * 11 10 8 41 41 H 1.09000 * 109.63339 * 294.86149 * 12 11 10 42 42 H 1.09006 * 109.42833 * 174.72336 * 12 11 10 43 43 H 0.97004 * 119.99124 * 95.06960 * 15 13 12 44 44 H 0.96996 * 119.99620 * 179.97438 * 19 18 16 45 45 H 1.09001 * 109.49431 * 301.41986 * 24 13 12 46 46 H 1.09001 * 109.52387 * 181.33659 * 24 13 12 47 47 H 1.08994 * 109.47052 * 64.17874 * 27 25 10 48 48 H 1.09004 * 109.46778 * 184.17732 * 27 25 10 49 49 H 1.08994 * 109.46924 * 304.17152 * 27 25 10 50 50 H 1.09004 * 109.47008 * 89.99896 * 29 28 3 51 51 H 1.08999 * 109.47219 * 210.00025 * 29 28 3 52 52 H 1.09002 * 109.47315 * 330.00065 * 29 28 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2837 2.1145 -1.1196 5 6 2.1218 1.6361 -2.5395 6 6 2.7103 3.3348 -0.7490 7 6 2.7127 3.3431 0.7178 8 6 3.1070 4.4576 1.5960 9 8 3.6792 4.2320 2.6452 10 7 2.8337 5.7277 1.2369 11 6 2.0384 6.0110 0.0345 12 6 0.8662 6.9228 0.4279 13 6 1.4104 8.1694 1.1293 14 1 2.0986 8.6895 0.4630 15 7 0.2990 9.0594 1.4745 16 6 -0.1796 9.9479 0.5489 17 1 0.2621 9.9923 -0.4356 18 6 -1.2329 10.7908 0.8758 19 7 -1.7714 10.7363 2.0755 20 14 -1.8861 12.0024 -0.3871 21 1 -2.3758 11.2611 -1.5771 22 1 -3.0029 12.7812 0.2056 23 1 -0.7986 12.9282 -0.7936 24 6 2.1489 7.7577 2.4050 25 6 3.3308 6.8552 2.0372 26 1 4.0574 7.4233 1.4562 27 6 3.9897 6.3275 3.3132 28 6 2.2748 2.1067 1.1052 29 6 2.1076 1.6362 2.5270 30 1 -0.3632 -1.0277 -0.0005 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 0.5137 0.8900 33 1 1.8935 -0.5138 0.8899 34 1 1.8934 -0.5137 -0.8901 35 1 1.1141 1.8639 -2.8869 36 1 2.8484 2.1394 -3.1775 37 1 2.2858 0.5594 -2.5812 38 1 2.9978 4.1461 -1.4016 39 1 2.6617 6.5116 -0.7063 40 1 1.6548 5.0779 -0.3781 41 1 0.1970 6.3887 1.1024 42 1 0.3204 7.2186 -0.4681 43 1 -0.0978 9.0193 2.3587 44 1 -2.5072 11.3256 2.3040 45 1 1.4676 7.2156 3.0608 46 1 2.5159 8.6473 2.9167 47 1 4.8669 5.7359 3.0511 48 1 4.2914 7.1666 3.9401 49 1 3.2803 5.7041 3.8573 50 1 3.0361 1.1797 2.8702 51 1 1.8632 2.4859 3.1645 52 1 1.3028 0.9027 2.5748 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001044667984.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:00:17 Heat of formation + Delta-G solvation = 29.825147 kcal Electronic energy + Delta-G solvation = -30029.390770 eV Core-core repulsion = 26223.208019 eV Total energy + Delta-G solvation = -3806.182751 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 333.216 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.66947 -39.81366 -37.09398 -34.54405 -34.30805 -32.89213 -32.38466 -31.79848 -29.57298 -29.34240 -28.91964 -26.93194 -25.05958 -24.10753 -23.98238 -22.79258 -22.08413 -21.00841 -19.89209 -19.35276 -17.88634 -17.06045 -16.75857 -16.06918 -15.64805 -15.45385 -14.88142 -14.76250 -14.66783 -13.99962 -13.79067 -13.61594 -13.50799 -13.41632 -13.34767 -13.14473 -13.05813 -12.85405 -12.67796 -12.45585 -12.30930 -12.26919 -11.97835 -11.86873 -11.74237 -11.64320 -11.46415 -11.41210 -11.17273 -10.85105 -10.74770 -10.59957 -10.30875 -10.21576 -9.74362 -9.63467 -8.86995 -8.81168 -8.50903 -8.19103 -7.97222 -6.91595 -5.72898 -3.01443 1.87949 2.33933 2.61176 3.34630 3.45612 3.49925 3.51067 3.62161 4.27802 4.47571 4.59049 4.61366 4.70453 4.77133 4.98024 5.02159 5.10319 5.16655 5.25372 5.31207 5.31721 5.34361 5.48793 5.49574 5.53941 5.57432 5.60082 5.65008 5.69903 5.71690 5.80280 5.86429 5.87418 5.99369 6.09888 6.13081 6.16921 6.29020 6.39868 6.54937 6.59659 6.64603 6.69285 6.77326 6.91203 7.03564 7.09192 7.17549 7.19387 7.72213 7.85161 8.45704 8.61806 9.56526 10.15450 10.50416 11.49825 Molecular weight = 333.22amu Principal moments of inertia in cm(-1) A = 0.013287 B = 0.003043 C = 0.002727 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2106.816650 B = 9198.126086 C =10264.411721 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.095 3.905 3 N -0.439 5.439 4 C 0.009 3.991 5 C -0.082 4.082 6 C -0.165 4.165 7 C -0.222 4.222 8 C 0.591 3.409 9 O -0.549 6.549 10 N -0.597 5.597 11 C 0.102 3.898 12 C -0.148 4.148 13 C 0.179 3.821 14 H 0.046 0.954 15 N -0.724 5.724 16 C -0.237 4.237 17 H 0.069 0.931 18 C -0.014 4.014 19 N -0.934 5.934 20 Si 0.906 3.094 21 H -0.286 1.286 22 H -0.292 1.292 23 H -0.286 1.286 24 C -0.134 4.134 25 C 0.148 3.852 26 H 0.067 0.933 27 C -0.131 4.131 28 C 0.093 3.907 29 C -0.085 4.085 30 H 0.074 0.926 31 H 0.064 0.936 32 H 0.064 0.936 33 H 0.089 0.911 34 H 0.090 0.910 35 H 0.071 0.929 36 H 0.079 0.921 37 H 0.060 0.940 38 H 0.146 0.854 39 H 0.060 0.940 40 H 0.093 0.907 41 H 0.057 0.943 42 H 0.071 0.929 43 H 0.383 0.617 44 H 0.255 0.745 45 H 0.062 0.938 46 H 0.073 0.927 47 H 0.066 0.934 48 H 0.039 0.961 49 H 0.070 0.930 50 H 0.077 0.923 51 H 0.087 0.913 52 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.974 -23.991 -5.767 26.256 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.026 4.026 3 N -0.116 5.116 4 C -0.099 4.099 5 C -0.139 4.139 6 C -0.189 4.189 7 C -0.232 4.232 8 C 0.381 3.619 9 O -0.429 6.429 10 N -0.329 5.329 11 C -0.022 4.022 12 C -0.189 4.189 13 C 0.069 3.931 14 H 0.064 0.936 15 N -0.365 5.365 16 C -0.369 4.369 17 H 0.087 0.913 18 C -0.210 4.210 19 N -0.582 5.582 20 Si 0.737 3.263 21 H -0.213 1.213 22 H -0.218 1.218 23 H -0.213 1.213 24 C -0.173 4.173 25 C 0.045 3.955 26 H 0.085 0.915 27 C -0.189 4.189 28 C -0.022 4.022 29 C -0.142 4.142 30 H 0.092 0.908 31 H 0.083 0.917 32 H 0.083 0.917 33 H 0.107 0.893 34 H 0.108 0.892 35 H 0.089 0.911 36 H 0.098 0.902 37 H 0.079 0.921 38 H 0.163 0.837 39 H 0.079 0.921 40 H 0.111 0.889 41 H 0.076 0.924 42 H 0.090 0.910 43 H 0.217 0.783 44 H 0.065 0.935 45 H 0.081 0.919 46 H 0.091 0.909 47 H 0.085 0.915 48 H 0.057 0.943 49 H 0.089 0.911 50 H 0.095 0.905 51 H 0.105 0.895 52 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 9.098 -24.284 -5.381 26.485 hybrid contribution -0.760 0.786 -0.615 1.254 sum 8.338 -23.499 -5.996 25.645 Atomic orbital electron populations 1.22170 0.94171 1.02944 1.03546 1.21837 0.95704 0.80838 1.04249 1.43553 1.51265 1.11775 1.05037 1.20159 1.08443 0.92692 0.88566 1.20308 1.02925 1.00902 0.89805 1.21828 1.07464 0.96566 0.93047 1.20182 1.15066 0.94531 0.93405 1.17419 0.78146 0.81790 0.84540 1.90787 1.43412 1.84528 1.24174 1.47982 1.52630 1.05034 1.27259 1.22194 0.92939 1.00777 0.86255 1.22717 0.96724 0.97672 1.01813 1.20181 0.89965 0.89669 0.93335 0.93599 1.42435 1.37421 1.41479 1.15126 1.19199 1.11947 1.11458 0.94252 0.91260 1.24737 0.99217 1.00278 0.96786 1.69655 1.27553 1.41738 1.19256 0.86287 0.78296 0.81145 0.80577 1.21326 1.21765 1.21304 1.22279 0.96796 0.98878 0.99304 1.21271 0.95292 0.86460 0.92502 0.91473 1.22181 1.01775 0.99158 0.95744 1.20116 1.02293 0.90880 0.88955 1.20394 1.01985 1.02303 0.89566 0.90762 0.91669 0.91659 0.89255 0.89212 0.91056 0.90165 0.92069 0.83656 0.92138 0.88922 0.92403 0.91005 0.78316 0.93517 0.91895 0.90852 0.91514 0.94254 0.91077 0.90468 0.89468 0.92046 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.00 10.24 37.16 0.38 -0.62 16 2 C 0.10 0.60 6.09 -4.04 -0.02 0.57 16 3 N -0.44 -4.37 2.69 -107.96 -0.29 -4.66 16 4 C 0.01 0.09 6.85 -81.87 -0.56 -0.47 16 5 C -0.08 -0.56 10.06 36.01 0.36 -0.19 16 6 C -0.16 -2.00 8.53 -37.50 -0.32 -2.32 16 7 C -0.22 -3.16 5.45 -103.35 -0.56 -3.72 16 8 C 0.59 9.59 7.29 -12.59 -0.09 9.50 16 9 O -0.55 -9.77 11.52 5.26 0.06 -9.71 16 10 N -0.60 -9.40 2.97 -166.27 -0.49 -9.89 16 11 C 0.10 1.51 5.46 -3.49 -0.02 1.49 16 12 C -0.15 -2.69 5.67 -26.38 -0.15 -2.84 16 13 C 0.18 3.60 2.73 -67.89 -0.19 3.42 16 14 H 0.05 0.94 8.08 -51.93 -0.42 0.52 16 15 N -0.72 -18.36 5.12 -53.38 -0.27 -18.63 16 16 C -0.24 -6.59 9.93 -15.06 -0.15 -6.74 16 17 H 0.07 1.86 7.83 -52.49 -0.41 1.44 16 18 C -0.01 -0.41 5.50 -17.43 -0.10 -0.51 16 19 N -0.93 -28.46 13.06 55.49 0.72 -27.74 16 20 Si 0.91 22.45 29.55 -169.99 -5.02 17.43 16 21 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 22 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 23 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 24 C -0.13 -2.39 4.84 -26.61 -0.13 -2.52 16 25 C 0.15 2.35 3.49 -67.60 -0.24 2.12 16 26 H 0.07 1.02 8.14 -51.93 -0.42 0.59 16 27 C -0.13 -2.05 7.59 37.16 0.28 -1.77 16 28 C 0.09 1.14 6.88 -81.88 -0.56 0.58 16 29 C -0.09 -0.90 9.20 36.00 0.33 -0.57 16 30 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16 31 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 32 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 33 H 0.09 0.47 7.49 -51.93 -0.39 0.08 16 34 H 0.09 0.42 6.89 -51.93 -0.36 0.06 16 35 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 36 H 0.08 0.49 8.14 -51.93 -0.42 0.06 16 37 H 0.06 0.33 6.94 -51.93 -0.36 -0.03 16 38 H 0.15 1.61 7.17 -52.48 -0.38 1.23 16 39 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 40 H 0.09 1.29 4.51 -51.93 -0.23 1.05 16 41 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 42 H 0.07 1.37 8.14 -51.93 -0.42 0.94 16 43 H 0.38 10.44 7.80 -40.82 -0.32 10.12 16 44 H 0.25 7.55 8.31 -40.82 -0.34 7.21 16 45 H 0.06 1.19 8.14 -51.93 -0.42 0.76 16 46 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16 47 H 0.07 1.08 6.77 -51.93 -0.35 0.73 16 48 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 49 H 0.07 1.21 6.72 -51.93 -0.35 0.87 16 50 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 51 H 0.09 1.08 7.54 -51.93 -0.39 0.69 16 52 H 0.06 0.49 7.58 -51.93 -0.39 0.10 16 LS Contribution 401.51 15.07 6.05 6.05 Total: -1.00 -32.97 401.51 -9.96 -42.93 By element: Atomic # 1 Polarization: 17.79 SS G_CDS: -8.98 Total: 8.81 kcal Atomic # 6 Polarization: -2.85 SS G_CDS: -1.73 Total: -4.58 kcal Atomic # 7 Polarization: -60.59 SS G_CDS: -0.33 Total: -60.93 kcal Atomic # 8 Polarization: -9.77 SS G_CDS: 0.06 Total: -9.71 kcal Atomic # 14 Polarization: 22.45 SS G_CDS: -5.02 Total: 17.43 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -32.97 -9.96 -42.93 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044667984.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.752 kcal (2) G-P(sol) polarization free energy of solvation -32.967 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.784 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.959 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.927 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.825 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds