Wall clock time and date at job start Tue Mar 31 2020 18:00:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 N 1.46504 * 109.46870 * 2 1 4 4 C 1.36442 * 124.85383 * 269.70030 * 3 2 1 5 5 C 1.50702 * 125.56924 * 0.03219 * 4 3 2 6 6 C 1.34483 * 108.85666 * 179.88272 * 4 3 2 7 7 C 1.46689 * 106.33265 * 0.36292 * 6 4 3 8 8 C 1.47262 * 126.94244 * 179.77486 * 7 6 4 9 9 O 1.21624 * 120.00126 * 215.72849 * 8 7 6 10 10 N 1.34785 * 119.99923 * 35.72943 * 8 7 6 11 11 C 1.46921 * 120.62849 * 5.52204 * 10 8 7 12 12 C 1.53631 * 108.53927 * 126.37090 * 11 10 8 13 13 C 1.53038 * 109.24001 * 54.85451 * 12 11 10 14 14 H 1.09003 * 109.45063 * 58.52656 * 13 12 11 15 15 N 1.46508 * 109.45543 * 178.48812 * 13 12 11 16 16 C 1.36931 * 120.00396 * 275.06475 * 15 13 12 17 17 H 1.08000 * 119.99520 * 0.02562 * 16 15 13 18 18 C 1.38815 * 120.00268 * 179.97438 * 16 15 13 19 19 N 1.31617 * 119.99605 * 0.02562 * 18 16 15 20 20 Si 1.86799 * 120.00018 * 180.02562 * 18 16 15 21 21 H 1.48508 * 109.46875 * 60.00437 * 20 18 16 22 22 H 1.48491 * 109.47030 * 180.02562 * 20 18 16 23 23 H 1.48495 * 109.47366 * 300.00394 * 20 18 16 24 24 C 1.53039 * 109.54050 * 298.50872 * 13 12 11 25 25 C 1.46930 * 120.62734 * 185.80299 * 10 8 7 26 26 H 1.09001 * 109.58368 * 113.80118 * 25 10 8 27 27 C 1.52999 * 109.58590 * 353.37470 * 25 10 8 28 28 C 1.34665 * 124.84747 * 90.00022 * 3 2 1 29 29 C 1.50695 * 125.80212 * 359.96273 * 28 3 2 30 30 H 1.09003 * 109.46395 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.46777 * 60.00124 * 1 2 3 32 32 H 1.08996 * 109.46934 * 299.99533 * 1 2 3 33 33 H 1.08997 * 109.47518 * 119.99932 * 2 1 3 34 34 H 1.09004 * 109.47038 * 240.00771 * 2 1 3 35 35 H 1.08997 * 109.46877 * 90.00681 * 5 4 3 36 36 H 1.09002 * 109.46916 * 209.99936 * 5 4 3 37 37 H 1.08993 * 109.47581 * 330.00304 * 5 4 3 38 38 H 1.08009 * 126.83218 * 180.13811 * 6 4 3 39 39 H 1.08996 * 109.58554 * 246.19960 * 11 10 8 40 40 H 1.08999 * 109.59010 * 6.62886 * 11 10 8 41 41 H 1.09000 * 109.63339 * 294.86149 * 12 11 10 42 42 H 1.09006 * 109.42833 * 174.72336 * 12 11 10 43 43 H 0.97004 * 119.99124 * 95.06960 * 15 13 12 44 44 H 0.96996 * 119.99620 * 179.97438 * 19 18 16 45 45 H 1.09001 * 109.49431 * 301.41986 * 24 13 12 46 46 H 1.09001 * 109.52387 * 181.33659 * 24 13 12 47 47 H 1.08994 * 109.47052 * 64.17874 * 27 25 10 48 48 H 1.09004 * 109.46778 * 184.17732 * 27 25 10 49 49 H 1.08994 * 109.46924 * 304.17152 * 27 25 10 50 50 H 1.09004 * 109.47008 * 89.99896 * 29 28 3 51 51 H 1.08999 * 109.47219 * 210.00025 * 29 28 3 52 52 H 1.09002 * 109.47315 * 330.00065 * 29 28 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2837 2.1145 -1.1196 5 6 2.1218 1.6361 -2.5395 6 6 2.7103 3.3348 -0.7490 7 6 2.7127 3.3431 0.7178 8 6 3.1070 4.4576 1.5960 9 8 3.6792 4.2320 2.6452 10 7 2.8337 5.7277 1.2369 11 6 2.0384 6.0110 0.0345 12 6 0.8662 6.9228 0.4279 13 6 1.4104 8.1694 1.1293 14 1 2.0986 8.6895 0.4630 15 7 0.2990 9.0594 1.4745 16 6 -0.1796 9.9479 0.5489 17 1 0.2621 9.9923 -0.4356 18 6 -1.2329 10.7908 0.8758 19 7 -1.7714 10.7363 2.0755 20 14 -1.8861 12.0024 -0.3871 21 1 -2.3758 11.2611 -1.5771 22 1 -3.0029 12.7812 0.2056 23 1 -0.7986 12.9282 -0.7936 24 6 2.1489 7.7577 2.4050 25 6 3.3308 6.8552 2.0372 26 1 4.0574 7.4233 1.4562 27 6 3.9897 6.3275 3.3132 28 6 2.2748 2.1067 1.1052 29 6 2.1076 1.6362 2.5270 30 1 -0.3632 -1.0277 -0.0005 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 0.5137 0.8900 33 1 1.8935 -0.5138 0.8899 34 1 1.8934 -0.5137 -0.8901 35 1 1.1141 1.8639 -2.8869 36 1 2.8484 2.1394 -3.1775 37 1 2.2858 0.5594 -2.5812 38 1 2.9978 4.1461 -1.4016 39 1 2.6617 6.5116 -0.7063 40 1 1.6548 5.0779 -0.3781 41 1 0.1970 6.3887 1.1024 42 1 0.3204 7.2186 -0.4681 43 1 -0.0978 9.0193 2.3587 44 1 -2.5072 11.3256 2.3040 45 1 1.4676 7.2156 3.0608 46 1 2.5159 8.6473 2.9167 47 1 4.8669 5.7359 3.0511 48 1 4.2914 7.1666 3.9401 49 1 3.2803 5.7041 3.8573 50 1 3.0361 1.1797 2.8702 51 1 1.8632 2.4859 3.1645 52 1 1.3028 0.9027 2.5748 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001044667984.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:00:16 Heat of formation + Delta-G solvation = 11.418172 kcal Electronic energy + Delta-G solvation = -30030.188956 eV Core-core repulsion = 26223.208019 eV Total energy + Delta-G solvation = -3806.980937 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 333.216 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -42.52893 -41.06241 -38.55670 -36.12157 -35.21661 -33.78549 -33.74104 -33.40066 -31.01821 -30.21833 -29.88092 -28.38217 -26.17913 -25.72202 -24.71735 -24.31957 -23.14498 -22.16534 -21.33315 -20.41576 -19.19002 -18.80426 -17.72698 -17.02603 -16.88998 -16.65943 -16.38461 -15.96330 -15.57706 -15.45661 -15.35321 -14.98890 -14.67519 -14.43898 -14.30617 -14.10902 -14.03006 -13.75942 -13.61923 -13.45763 -13.40870 -13.24037 -13.07526 -13.00230 -12.92009 -12.81699 -12.64039 -12.58319 -12.40333 -12.25623 -12.21062 -12.08968 -11.99534 -11.90078 -11.66702 -11.33936 -10.86935 -10.05363 -9.53759 -9.37581 -8.98776 -8.86634 -7.91683 -5.20762 0.89512 1.47815 1.48352 1.51628 1.57496 1.83749 2.18913 2.47324 2.58401 3.41080 3.69276 3.76484 3.79701 3.83646 3.94750 4.03875 4.11806 4.13686 4.19801 4.27432 4.32265 4.35659 4.36995 4.52220 4.59786 4.62481 4.65916 4.66951 4.74712 4.78157 4.82752 4.85943 4.87469 4.90994 4.98475 5.02884 5.05744 5.08173 5.15202 5.18729 5.25924 5.26641 5.34954 5.45437 5.51128 5.55237 5.78678 5.90168 6.20679 6.29483 6.43250 6.61696 7.35220 7.38127 8.10584 8.34901 9.31973 Molecular weight = 333.22amu Principal moments of inertia in cm(-1) A = 0.013287 B = 0.003043 C = 0.002727 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2106.816650 B = 9198.126086 C =10264.411721 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.088 3.912 3 N -0.434 5.434 4 C 0.017 3.983 5 C -0.080 4.080 6 C -0.187 4.187 7 C -0.258 4.258 8 C 0.586 3.414 9 O -0.572 6.572 10 N -0.600 5.600 11 C 0.114 3.886 12 C -0.136 4.136 13 C 0.175 3.825 14 H 0.049 0.951 15 N -0.738 5.738 16 C -0.237 4.237 17 H 0.079 0.921 18 C -0.079 4.079 19 N -0.973 5.973 20 Si 0.973 3.027 21 H -0.276 1.276 22 H -0.299 1.299 23 H -0.277 1.277 24 C -0.121 4.121 25 C 0.151 3.849 26 H 0.083 0.917 27 C -0.119 4.119 28 C 0.085 3.915 29 C -0.081 4.081 30 H 0.098 0.902 31 H 0.057 0.943 32 H 0.048 0.952 33 H 0.102 0.898 34 H 0.114 0.886 35 H 0.079 0.921 36 H 0.089 0.911 37 H 0.081 0.919 38 H 0.152 0.848 39 H 0.080 0.920 40 H 0.106 0.894 41 H 0.037 0.963 42 H 0.063 0.937 43 H 0.369 0.631 44 H 0.250 0.750 45 H 0.046 0.954 46 H 0.071 0.929 47 H 0.061 0.939 48 H 0.053 0.947 49 H 0.051 0.949 50 H 0.082 0.918 51 H 0.062 0.938 52 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.630 -25.953 -8.215 28.876 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.032 4.032 3 N -0.110 5.110 4 C -0.092 4.092 5 C -0.137 4.137 6 C -0.211 4.211 7 C -0.268 4.268 8 C 0.378 3.622 9 O -0.455 6.455 10 N -0.332 5.332 11 C -0.009 4.009 12 C -0.177 4.177 13 C 0.067 3.933 14 H 0.067 0.933 15 N -0.377 5.377 16 C -0.368 4.368 17 H 0.097 0.903 18 C -0.270 4.270 19 N -0.624 5.624 20 Si 0.802 3.198 21 H -0.202 1.202 22 H -0.225 1.225 23 H -0.203 1.203 24 C -0.160 4.160 25 C 0.048 3.952 26 H 0.101 0.899 27 C -0.176 4.176 28 C -0.032 4.032 29 C -0.138 4.138 30 H 0.116 0.884 31 H 0.077 0.923 32 H 0.067 0.933 33 H 0.120 0.880 34 H 0.132 0.868 35 H 0.097 0.903 36 H 0.107 0.893 37 H 0.099 0.901 38 H 0.170 0.830 39 H 0.098 0.902 40 H 0.124 0.876 41 H 0.056 0.944 42 H 0.082 0.918 43 H 0.201 0.799 44 H 0.058 0.942 45 H 0.065 0.935 46 H 0.089 0.911 47 H 0.080 0.920 48 H 0.071 0.929 49 H 0.070 0.930 50 H 0.100 0.900 51 H 0.081 0.919 52 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 9.787 -26.292 -7.874 29.139 hybrid contribution -0.931 1.271 0.155 1.583 sum 8.856 -25.021 -7.719 27.642 Atomic orbital electron populations 1.22143 0.93759 1.04145 1.02361 1.22186 0.95974 0.78954 1.06120 1.43835 1.50076 1.12893 1.04235 1.20701 1.06299 0.92088 0.90065 1.20424 1.03673 1.02232 0.87412 1.21962 1.09042 0.97981 0.92076 1.20213 1.17445 0.94772 0.94399 1.17804 0.77658 0.82250 0.84527 1.90762 1.44499 1.84895 1.25294 1.48028 1.52742 1.05037 1.27434 1.22140 0.91780 1.00743 0.86203 1.22505 0.97593 0.97042 1.00587 1.20395 0.88759 0.89634 0.94544 0.93284 1.42656 1.38552 1.42240 1.14232 1.19614 1.11390 1.11054 0.94786 0.90322 1.25574 1.00088 1.02643 0.98733 1.69829 1.28279 1.42949 1.21344 0.85214 0.77428 0.78850 0.78306 1.20232 1.22503 1.20328 1.22131 0.97036 0.99001 0.97873 1.21246 0.94504 0.86429 0.93054 0.89901 1.22012 1.00883 0.99149 0.95532 1.20320 1.01899 0.90814 0.90164 1.20355 1.03117 1.01885 0.88440 0.88380 0.92348 0.93317 0.88006 0.86826 0.90267 0.89271 0.90065 0.83040 0.90152 0.87579 0.94427 0.91802 0.79931 0.94172 0.93530 0.91066 0.91974 0.92861 0.93028 0.89991 0.91944 0.89527 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.51 10.24 71.98 0.74 -0.77 16 2 C 0.09 0.83 6.09 86.38 0.53 1.35 16 3 N -0.43 -7.73 2.69 -495.47 -1.33 -9.06 16 4 C 0.02 0.31 6.85 40.98 0.28 0.59 16 5 C -0.08 -0.82 10.06 71.24 0.72 -0.10 16 6 C -0.19 -4.30 8.53 23.62 0.20 -4.10 16 7 C -0.26 -7.27 5.45 -19.04 -0.10 -7.37 16 8 C 0.59 19.21 7.29 86.61 0.63 19.84 16 9 O -0.57 -20.89 11.52 -4.11 -0.05 -20.94 16 10 N -0.60 -18.81 2.97 -798.21 -2.37 -21.18 16 11 C 0.11 3.29 5.46 86.51 0.47 3.76 16 12 C -0.14 -4.96 5.67 30.82 0.17 -4.79 16 13 C 0.17 7.10 2.73 45.02 0.12 7.22 16 14 H 0.05 1.97 8.08 -2.39 -0.02 1.96 16 15 N -0.74 -38.14 5.12 -322.80 -1.65 -39.79 16 16 C -0.24 -13.20 9.93 84.04 0.83 -12.36 16 17 H 0.08 4.15 7.83 -2.91 -0.02 4.13 16 18 C -0.08 -4.55 5.50 84.86 0.47 -4.09 16 19 N -0.97 -60.70 13.06 21.65 0.28 -60.41 16 20 Si 0.97 46.36 29.55 68.60 2.03 48.39 16 21 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 22 H -0.30 -14.44 7.11 99.48 0.71 -13.74 16 23 H -0.28 -12.67 7.11 99.48 0.71 -11.97 16 24 C -0.12 -4.41 4.84 30.67 0.15 -4.26 16 25 C 0.15 4.77 3.49 44.97 0.16 4.93 16 26 H 0.08 2.39 8.14 -2.39 -0.02 2.37 16 27 C -0.12 -3.72 7.59 71.98 0.55 -3.17 16 28 C 0.09 2.03 6.88 41.78 0.29 2.32 16 29 C -0.08 -1.67 9.20 71.23 0.66 -1.01 16 30 H 0.10 0.43 8.14 -2.39 -0.02 0.41 16 31 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 32 H 0.05 0.61 8.14 -2.39 -0.02 0.59 16 33 H 0.10 0.74 7.49 -2.39 -0.02 0.72 16 34 H 0.11 0.57 6.89 -2.38 -0.02 0.56 16 35 H 0.08 0.74 8.14 -2.39 -0.02 0.72 16 36 H 0.09 0.78 8.14 -2.39 -0.02 0.77 16 37 H 0.08 0.52 6.94 -2.39 -0.02 0.50 16 38 H 0.15 3.12 7.17 -2.91 -0.02 3.10 16 39 H 0.08 2.03 8.14 -2.39 -0.02 2.01 16 40 H 0.11 2.85 4.51 -2.39 -0.01 2.84 16 41 H 0.04 1.50 8.14 -2.39 -0.02 1.48 16 42 H 0.06 2.42 8.14 -2.38 -0.02 2.40 16 43 H 0.37 20.86 7.80 -92.71 -0.72 20.13 16 44 H 0.25 15.15 8.31 -92.71 -0.77 14.38 16 45 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 46 H 0.07 2.60 8.14 -2.39 -0.02 2.58 16 47 H 0.06 2.01 6.77 -2.39 -0.02 2.00 16 48 H 0.05 1.49 8.14 -2.39 -0.02 1.47 16 49 H 0.05 1.81 6.72 -2.39 -0.02 1.80 16 50 H 0.08 1.59 8.14 -2.39 -0.02 1.57 16 51 H 0.06 1.61 7.54 -2.39 -0.02 1.59 16 52 H 0.09 1.29 7.58 -2.39 -0.02 1.27 16 Total: -1.00 -72.78 401.51 3.95 -68.83 By element: Atomic # 1 Polarization: 35.99 SS G_CDS: 0.18 Total: 36.17 kcal Atomic # 6 Polarization: -8.85 SS G_CDS: 6.86 Total: -2.00 kcal Atomic # 7 Polarization: -125.38 SS G_CDS: -5.07 Total: -130.45 kcal Atomic # 8 Polarization: -20.89 SS G_CDS: -0.05 Total: -20.94 kcal Atomic # 14 Polarization: 46.36 SS G_CDS: 2.03 Total: 48.39 kcal Total: -72.78 3.95 -68.83 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044667984.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.246 kcal (2) G-P(sol) polarization free energy of solvation -72.777 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.469 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.949 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.827 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.418 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds