Wall clock time and date at job start Tue Mar 31 2020 18:00:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46499 * 109.47304 * 2 1 4 4 C 1.36446 * 124.85354 * 269.97568 * 3 2 1 5 5 C 1.50708 * 125.57155 * 0.02562 * 4 3 2 6 6 C 1.34484 * 108.85595 * 179.72875 * 4 3 2 7 7 C 1.46687 * 106.33425 * 0.44000 * 6 4 3 8 8 C 1.47262 * 126.94367 * 179.82827 * 7 6 4 9 9 O 1.21624 * 119.99988 * 207.12039 * 8 7 6 10 10 N 1.34774 * 119.99711 * 27.12228 * 8 7 6 11 11 C 1.46920 * 120.63590 * 5.51260 * 10 8 7 12 12 C 1.53190 * 108.78024 * 233.63264 * 11 10 8 13 13 C 1.53040 * 109.31313 * 305.36709 * 12 11 10 14 14 H 1.08997 * 109.45846 * 181.36839 * 13 12 11 15 15 N 1.46501 * 109.45776 * 301.34297 * 13 12 11 16 16 C 1.36938 * 119.99721 * 275.00085 * 15 13 12 17 17 H 1.07999 * 120.00441 * 359.97438 * 16 15 13 18 18 C 1.38814 * 119.99749 * 180.02562 * 16 15 13 19 19 N 1.31615 * 120.00134 * 180.02562 * 18 16 15 20 20 Si 1.86798 * 119.99901 * 359.97438 * 18 16 15 21 21 H 1.48500 * 109.47027 * 90.00458 * 20 18 16 22 22 H 1.48506 * 109.47156 * 210.00346 * 20 18 16 23 23 H 1.48492 * 109.47395 * 330.00249 * 20 18 16 24 24 C 1.53039 * 109.53770 * 61.36367 * 13 12 11 25 25 C 1.46932 * 120.62763 * 185.54067 * 10 8 7 26 26 H 1.08998 * 109.58336 * 246.15472 * 25 10 8 27 27 C 1.53004 * 109.70354 * 6.50878 * 25 10 8 28 28 C 1.34656 * 124.84779 * 89.99799 * 3 2 1 29 29 C 1.50699 * 125.80533 * 0.02562 * 28 3 2 30 30 H 1.09002 * 109.47137 * 59.99853 * 1 2 3 31 31 H 1.09001 * 109.47501 * 179.97438 * 1 2 3 32 32 H 1.08994 * 109.47194 * 299.99986 * 1 2 3 33 33 H 1.09006 * 109.46866 * 239.99890 * 2 1 3 34 34 H 1.08993 * 109.47067 * 120.00368 * 2 1 3 35 35 H 1.08999 * 109.47268 * 89.99315 * 5 4 3 36 36 H 1.08997 * 109.46947 * 210.00242 * 5 4 3 37 37 H 1.09004 * 109.46453 * 329.99981 * 5 4 3 38 38 H 1.08004 * 126.83131 * 180.26733 * 6 4 3 39 39 H 1.09002 * 109.58533 * 113.84115 * 11 10 8 40 40 H 1.09003 * 109.58621 * 353.42549 * 11 10 8 41 41 H 1.09004 * 109.49449 * 65.31661 * 12 11 10 42 42 H 1.08994 * 109.49788 * 185.37864 * 12 11 10 43 43 H 0.96999 * 120.00072 * 94.99693 * 15 13 12 44 44 H 0.96997 * 120.00355 * 180.02562 * 19 18 16 45 45 H 1.09000 * 109.50037 * 58.58671 * 24 13 12 46 46 H 1.09004 * 109.49678 * 178.65804 * 24 13 12 47 47 H 1.08996 * 109.47183 * 172.67781 * 27 25 10 48 48 H 1.08994 * 109.47155 * 292.68100 * 27 25 10 49 49 H 1.09002 * 109.46916 * 52.68111 * 27 25 10 50 50 H 1.08999 * 109.47099 * 269.99899 * 29 28 3 51 51 H 1.09004 * 109.47159 * 29.99193 * 29 28 3 52 52 H 1.08999 * 109.47596 * 149.99397 * 29 28 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2788 2.1162 -1.1197 5 6 2.1105 1.6401 -2.5397 6 6 2.7039 3.3370 -0.7491 7 6 2.7126 3.3432 0.7178 8 6 3.1069 4.4576 1.5959 9 8 3.5411 4.2305 2.7090 10 7 2.9865 5.7293 1.1660 11 6 2.3530 6.0260 -0.1260 12 6 3.3094 6.8858 -0.9583 13 6 3.7062 8.1255 -0.1534 14 1 4.3676 8.7511 -0.7527 15 7 2.5034 8.8840 0.1990 16 6 1.9800 9.7878 -0.6866 17 1 2.4540 9.9417 -1.6447 18 6 0.8407 10.5070 -0.3525 19 7 0.3372 11.3753 -1.2039 20 14 0.0212 10.2413 1.3050 21 1 0.6024 11.1776 2.3003 22 1 -1.4373 10.4924 1.1820 23 1 0.2468 8.8428 1.7503 24 6 4.4307 7.6958 1.1243 25 6 3.4869 6.8453 1.9803 26 1 2.6492 7.4558 2.3174 27 6 4.2449 6.3001 3.1924 28 6 2.2749 2.1066 1.1051 29 6 2.1089 1.6358 2.5270 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 -0.3633 0.5138 0.8899 33 1 1.8933 -0.5139 -0.8900 34 1 1.8933 -0.5139 0.8899 35 1 1.1012 1.8682 -2.8822 36 1 2.8342 2.1443 -3.1800 37 1 2.2745 0.5634 -2.5836 38 1 2.9858 4.1502 -1.4016 39 1 1.4229 6.5697 0.0394 40 1 2.1454 5.0950 -0.6536 41 1 4.2016 6.3078 -1.1997 42 1 2.8145 7.1926 -1.8796 43 1 2.0778 8.7461 1.0597 44 1 -0.4587 11.8781 -0.9703 45 1 5.3122 7.1103 0.8634 46 1 4.7340 8.5798 1.6854 47 1 4.7239 7.1237 3.7219 48 1 3.5470 5.7957 3.8606 49 1 5.0038 5.5927 2.8583 50 1 1.0999 1.8645 2.8700 51 1 2.2735 0.5593 2.5748 52 1 2.8331 2.1428 3.1646 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001044667985.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:00:20 Heat of formation + Delta-G solvation = 45.086600 kcal Electronic energy + Delta-G solvation = -30656.584580 eV Core-core repulsion = 26851.063616 eV Total energy + Delta-G solvation = -3805.520965 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 333.216 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.67488 -39.85353 -37.30923 -34.57707 -34.13928 -32.81376 -32.43601 -31.84078 -29.62534 -29.46293 -29.11961 -27.15786 -25.06349 -24.08768 -23.93197 -23.01842 -22.03194 -21.26760 -19.95360 -18.69241 -17.77853 -17.68211 -16.67458 -16.14223 -15.74081 -15.40778 -14.89019 -14.80137 -14.49526 -14.20203 -13.81792 -13.65260 -13.50219 -13.34951 -13.24061 -13.19025 -13.07072 -12.95827 -12.57921 -12.52947 -12.41025 -12.22939 -12.12169 -11.88969 -11.72261 -11.62066 -11.52671 -11.37592 -11.07741 -10.92824 -10.81271 -10.58130 -10.25740 -10.16971 -9.91208 -9.53878 -8.92262 -8.77487 -8.48747 -8.08793 -7.92408 -7.22949 -5.74875 -3.09437 1.87265 2.34205 2.63441 3.39329 3.43047 3.46422 3.47782 3.69996 4.28341 4.49124 4.59612 4.61326 4.73095 4.75904 5.03212 5.05506 5.14572 5.17639 5.22498 5.26551 5.35288 5.35923 5.43342 5.48049 5.50504 5.59057 5.61790 5.63499 5.70833 5.73328 5.78646 5.88404 5.89575 5.91606 6.01641 6.13763 6.20014 6.27415 6.29270 6.49248 6.53758 6.65256 6.74479 6.77286 6.80017 6.84415 7.06434 7.16279 7.20939 7.94041 8.02453 8.44635 8.67048 9.23545 9.96522 10.16919 11.43682 Molecular weight = 333.22amu Principal moments of inertia in cm(-1) A = 0.013418 B = 0.003642 C = 0.003368 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2086.179406 B = 7685.768199 C = 8311.340984 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.095 3.905 3 N -0.439 5.439 4 C 0.009 3.991 5 C -0.082 4.082 6 C -0.169 4.169 7 C -0.224 4.224 8 C 0.591 3.409 9 O -0.555 6.555 10 N -0.593 5.593 11 C 0.087 3.913 12 C -0.149 4.149 13 C 0.180 3.820 14 H 0.058 0.942 15 N -0.746 5.746 16 C -0.239 4.239 17 H 0.091 0.909 18 C 0.005 3.995 19 N -0.935 5.935 20 Si 0.879 3.121 21 H -0.284 1.284 22 H -0.292 1.292 23 H -0.278 1.278 24 C -0.136 4.136 25 C 0.145 3.855 26 H 0.067 0.933 27 C -0.133 4.133 28 C 0.095 3.905 29 C -0.095 4.095 30 H 0.064 0.936 31 H 0.073 0.927 32 H 0.063 0.937 33 H 0.090 0.910 34 H 0.089 0.911 35 H 0.071 0.929 36 H 0.081 0.919 37 H 0.060 0.940 38 H 0.157 0.843 39 H 0.071 0.929 40 H 0.105 0.895 41 H 0.051 0.949 42 H 0.076 0.924 43 H 0.360 0.640 44 H 0.259 0.741 45 H 0.065 0.935 46 H 0.073 0.927 47 H 0.039 0.961 48 H 0.072 0.928 49 H 0.064 0.936 50 H 0.071 0.929 51 H 0.060 0.940 52 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.026 -25.368 1.608 25.736 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.027 4.027 3 N -0.117 5.117 4 C -0.098 4.098 5 C -0.140 4.140 6 C -0.193 4.193 7 C -0.234 4.234 8 C 0.382 3.618 9 O -0.437 6.437 10 N -0.325 5.325 11 C -0.034 4.034 12 C -0.190 4.190 13 C 0.070 3.930 14 H 0.076 0.924 15 N -0.390 5.390 16 C -0.369 4.369 17 H 0.108 0.892 18 C -0.190 4.190 19 N -0.583 5.583 20 Si 0.709 3.291 21 H -0.211 1.211 22 H -0.218 1.218 23 H -0.204 1.204 24 C -0.175 4.175 25 C 0.042 3.958 26 H 0.085 0.915 27 C -0.190 4.190 28 C -0.020 4.020 29 C -0.152 4.152 30 H 0.083 0.917 31 H 0.092 0.908 32 H 0.082 0.918 33 H 0.108 0.892 34 H 0.107 0.893 35 H 0.090 0.910 36 H 0.100 0.900 37 H 0.079 0.921 38 H 0.174 0.826 39 H 0.089 0.911 40 H 0.122 0.878 41 H 0.070 0.930 42 H 0.094 0.906 43 H 0.194 0.806 44 H 0.069 0.931 45 H 0.083 0.917 46 H 0.092 0.908 47 H 0.058 0.942 48 H 0.091 0.909 49 H 0.083 0.917 50 H 0.089 0.911 51 H 0.079 0.921 52 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 4.084 -25.632 1.955 26.029 hybrid contribution -0.889 0.069 0.905 1.271 sum 3.195 -25.563 2.860 25.920 Atomic orbital electron populations 1.22154 0.94222 1.02897 1.03468 1.21831 0.95666 0.80941 1.04239 1.43584 1.51245 1.11729 1.05107 1.20213 1.08497 0.92555 0.88570 1.20321 1.02988 1.00893 0.89789 1.22028 1.07516 0.96350 0.93385 1.20178 1.15197 0.94636 0.93344 1.17371 0.77232 0.81823 0.85402 1.90729 1.47883 1.84529 1.20511 1.47937 1.58536 1.05009 1.20999 1.22377 0.96515 1.01247 0.83290 1.22467 0.98588 0.98051 0.99853 1.20154 0.88737 0.91068 0.93014 0.92401 1.42876 1.29983 1.47571 1.18589 1.19080 1.07165 1.12526 0.98128 0.89165 1.24629 0.98198 0.98756 0.97431 1.69690 1.24453 1.28832 1.35320 0.86645 0.79196 0.77756 0.85495 1.21069 1.21807 1.20399 1.22280 0.98070 0.99291 0.97859 1.21190 0.96449 0.87077 0.91098 0.91471 1.22163 1.00934 0.99157 0.96724 1.20135 1.01978 0.90963 0.88940 1.20549 1.03873 1.00759 0.90002 0.91686 0.90784 0.91755 0.89205 0.89267 0.91043 0.90031 0.92081 0.82605 0.91069 0.87759 0.93021 0.90578 0.80605 0.93139 0.91650 0.90800 0.94231 0.90914 0.91716 0.91057 0.92082 0.87937 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.01 10.24 37.16 0.38 -0.63 16 2 C 0.09 0.62 6.30 -4.04 -0.03 0.60 16 3 N -0.44 -4.57 2.69 -107.96 -0.29 -4.86 16 4 C 0.01 0.10 6.85 -81.86 -0.56 -0.46 16 5 C -0.08 -0.62 10.06 36.01 0.36 -0.25 16 6 C -0.17 -2.22 8.67 -37.50 -0.33 -2.54 16 7 C -0.22 -3.35 5.81 -103.35 -0.60 -3.95 16 8 C 0.59 10.08 7.39 -12.59 -0.09 9.99 16 9 O -0.56 -10.09 10.73 5.26 0.06 -10.04 16 10 N -0.59 -10.15 2.97 -166.54 -0.49 -10.65 16 11 C 0.09 1.48 5.65 -3.72 -0.02 1.45 16 12 C -0.15 -2.51 5.66 -26.61 -0.15 -2.66 16 13 C 0.18 3.41 3.10 -67.89 -0.21 3.20 16 14 H 0.06 1.13 8.08 -51.93 -0.42 0.71 16 15 N -0.75 -17.26 4.11 -53.39 -0.22 -17.48 16 16 C -0.24 -6.58 10.41 -15.06 -0.16 -6.74 16 17 H 0.09 2.65 8.06 -52.49 -0.42 2.23 16 18 C 0.01 0.16 5.50 -17.43 -0.10 0.06 16 19 N -0.93 -29.19 13.97 55.49 0.78 -28.41 16 20 Si 0.88 22.32 27.73 -169.99 -4.71 17.61 16 21 H -0.28 -7.20 7.11 56.52 0.40 -6.80 16 22 H -0.29 -7.53 7.11 56.52 0.40 -7.13 16 23 H -0.28 -6.75 6.52 56.52 0.37 -6.38 16 24 C -0.14 -2.26 5.07 -26.61 -0.13 -2.40 16 25 C 0.14 2.51 3.19 -67.59 -0.22 2.29 16 26 H 0.07 1.28 6.64 -51.93 -0.34 0.94 16 27 C -0.13 -2.14 7.61 37.16 0.28 -1.85 16 28 C 0.10 1.21 6.88 -81.88 -0.56 0.65 16 29 C -0.09 -1.02 9.80 36.01 0.35 -0.66 16 30 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 31 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16 32 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 33 H 0.09 0.45 6.90 -51.93 -0.36 0.09 16 34 H 0.09 0.49 6.87 -51.93 -0.36 0.13 16 35 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 36 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 37 H 0.06 0.36 6.94 -51.93 -0.36 0.00 16 38 H 0.16 1.96 6.19 -52.48 -0.32 1.63 16 39 H 0.07 1.40 7.74 -51.93 -0.40 1.00 16 40 H 0.10 1.57 3.01 -51.93 -0.16 1.41 16 41 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 42 H 0.08 1.36 8.14 -51.93 -0.42 0.94 16 43 H 0.36 8.41 3.92 -40.82 -0.16 8.25 16 44 H 0.26 7.74 8.31 -40.82 -0.34 7.40 16 45 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 46 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 47 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 48 H 0.07 1.25 6.67 -51.93 -0.35 0.90 16 49 H 0.06 1.09 6.84 -51.93 -0.36 0.73 16 50 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 51 H 0.06 0.49 6.92 -51.93 -0.36 0.13 16 52 H 0.10 1.31 6.37 -51.93 -0.33 0.98 16 LS Contribution 390.15 15.07 5.88 5.88 Total: -1.00 -33.09 390.15 -9.30 -42.39 By element: Atomic # 1 Polarization: 17.97 SS G_CDS: -8.52 Total: 9.45 kcal Atomic # 6 Polarization: -2.13 SS G_CDS: -1.78 Total: -3.91 kcal Atomic # 7 Polarization: -61.17 SS G_CDS: -0.23 Total: -61.39 kcal Atomic # 8 Polarization: -10.09 SS G_CDS: 0.06 Total: -10.04 kcal Atomic # 14 Polarization: 22.32 SS G_CDS: -4.71 Total: 17.61 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -33.09 -9.30 -42.39 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044667985.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.479 kcal (2) G-P(sol) polarization free energy of solvation -33.093 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.386 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.300 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.393 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.087 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds