Wall clock time and date at job start Tue Mar 31 2020 18:00:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46499 * 109.47304 * 2 1 4 4 C 1.36446 * 124.85354 * 269.97568 * 3 2 1 5 5 C 1.50708 * 125.57155 * 0.02562 * 4 3 2 6 6 C 1.34484 * 108.85595 * 179.72875 * 4 3 2 7 7 C 1.46687 * 106.33425 * 0.44000 * 6 4 3 8 8 C 1.47262 * 126.94367 * 179.82827 * 7 6 4 9 9 O 1.21624 * 119.99988 * 207.12039 * 8 7 6 10 10 N 1.34774 * 119.99711 * 27.12228 * 8 7 6 11 11 C 1.46920 * 120.63590 * 5.51260 * 10 8 7 12 12 C 1.53190 * 108.78024 * 233.63264 * 11 10 8 13 13 C 1.53040 * 109.31313 * 305.36709 * 12 11 10 14 14 H 1.08997 * 109.45846 * 181.36839 * 13 12 11 15 15 N 1.46501 * 109.45776 * 301.34297 * 13 12 11 16 16 C 1.36938 * 119.99721 * 275.00085 * 15 13 12 17 17 H 1.07999 * 120.00441 * 359.97438 * 16 15 13 18 18 C 1.38814 * 119.99749 * 180.02562 * 16 15 13 19 19 N 1.31615 * 120.00134 * 180.02562 * 18 16 15 20 20 Si 1.86798 * 119.99901 * 359.97438 * 18 16 15 21 21 H 1.48500 * 109.47027 * 90.00458 * 20 18 16 22 22 H 1.48506 * 109.47156 * 210.00346 * 20 18 16 23 23 H 1.48492 * 109.47395 * 330.00249 * 20 18 16 24 24 C 1.53039 * 109.53770 * 61.36367 * 13 12 11 25 25 C 1.46932 * 120.62763 * 185.54067 * 10 8 7 26 26 H 1.08998 * 109.58336 * 246.15472 * 25 10 8 27 27 C 1.53004 * 109.70354 * 6.50878 * 25 10 8 28 28 C 1.34656 * 124.84779 * 89.99799 * 3 2 1 29 29 C 1.50699 * 125.80533 * 0.02562 * 28 3 2 30 30 H 1.09002 * 109.47137 * 59.99853 * 1 2 3 31 31 H 1.09001 * 109.47501 * 179.97438 * 1 2 3 32 32 H 1.08994 * 109.47194 * 299.99986 * 1 2 3 33 33 H 1.09006 * 109.46866 * 239.99890 * 2 1 3 34 34 H 1.08993 * 109.47067 * 120.00368 * 2 1 3 35 35 H 1.08999 * 109.47268 * 89.99315 * 5 4 3 36 36 H 1.08997 * 109.46947 * 210.00242 * 5 4 3 37 37 H 1.09004 * 109.46453 * 329.99981 * 5 4 3 38 38 H 1.08004 * 126.83131 * 180.26733 * 6 4 3 39 39 H 1.09002 * 109.58533 * 113.84115 * 11 10 8 40 40 H 1.09003 * 109.58621 * 353.42549 * 11 10 8 41 41 H 1.09004 * 109.49449 * 65.31661 * 12 11 10 42 42 H 1.08994 * 109.49788 * 185.37864 * 12 11 10 43 43 H 0.96999 * 120.00072 * 94.99693 * 15 13 12 44 44 H 0.96997 * 120.00355 * 180.02562 * 19 18 16 45 45 H 1.09000 * 109.50037 * 58.58671 * 24 13 12 46 46 H 1.09004 * 109.49678 * 178.65804 * 24 13 12 47 47 H 1.08996 * 109.47183 * 172.67781 * 27 25 10 48 48 H 1.08994 * 109.47155 * 292.68100 * 27 25 10 49 49 H 1.09002 * 109.46916 * 52.68111 * 27 25 10 50 50 H 1.08999 * 109.47099 * 269.99899 * 29 28 3 51 51 H 1.09004 * 109.47159 * 29.99193 * 29 28 3 52 52 H 1.08999 * 109.47596 * 149.99397 * 29 28 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2788 2.1162 -1.1197 5 6 2.1105 1.6401 -2.5397 6 6 2.7039 3.3370 -0.7491 7 6 2.7126 3.3432 0.7178 8 6 3.1069 4.4576 1.5959 9 8 3.5411 4.2305 2.7090 10 7 2.9865 5.7293 1.1660 11 6 2.3530 6.0260 -0.1260 12 6 3.3094 6.8858 -0.9583 13 6 3.7062 8.1255 -0.1534 14 1 4.3676 8.7511 -0.7527 15 7 2.5034 8.8840 0.1990 16 6 1.9800 9.7878 -0.6866 17 1 2.4540 9.9417 -1.6447 18 6 0.8407 10.5070 -0.3525 19 7 0.3372 11.3753 -1.2039 20 14 0.0212 10.2413 1.3050 21 1 0.6024 11.1776 2.3003 22 1 -1.4373 10.4924 1.1820 23 1 0.2468 8.8428 1.7503 24 6 4.4307 7.6958 1.1243 25 6 3.4869 6.8453 1.9803 26 1 2.6492 7.4558 2.3174 27 6 4.2449 6.3001 3.1924 28 6 2.2749 2.1066 1.1051 29 6 2.1089 1.6358 2.5270 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 -0.3633 0.5138 0.8899 33 1 1.8933 -0.5139 -0.8900 34 1 1.8933 -0.5139 0.8899 35 1 1.1012 1.8682 -2.8822 36 1 2.8342 2.1443 -3.1800 37 1 2.2745 0.5634 -2.5836 38 1 2.9858 4.1502 -1.4016 39 1 1.4229 6.5697 0.0394 40 1 2.1454 5.0950 -0.6536 41 1 4.2016 6.3078 -1.1997 42 1 2.8145 7.1926 -1.8796 43 1 2.0778 8.7461 1.0597 44 1 -0.4587 11.8781 -0.9703 45 1 5.3122 7.1103 0.8634 46 1 4.7340 8.5798 1.6854 47 1 4.7239 7.1237 3.7219 48 1 3.5470 5.7957 3.8606 49 1 5.0038 5.5927 2.8583 50 1 1.0999 1.8645 2.8700 51 1 2.2735 0.5593 2.5748 52 1 2.8331 2.1428 3.1646 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001044667985.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:00:19 Heat of formation + Delta-G solvation = 26.407873 kcal Electronic energy + Delta-G solvation = -30657.394551 eV Core-core repulsion = 26851.063616 eV Total energy + Delta-G solvation = -3806.330935 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 333.216 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -42.58940 -41.14529 -38.76403 -35.94617 -35.28118 -33.84617 -33.73147 -33.46121 -31.42364 -30.22954 -29.92505 -28.54520 -26.14989 -25.44638 -24.82041 -24.79047 -23.14900 -22.35506 -21.16274 -19.95566 -19.75069 -18.91827 -17.69315 -17.15345 -16.97737 -16.62365 -16.28452 -16.13972 -15.74593 -15.43925 -15.24199 -14.99114 -14.70556 -14.55029 -14.29318 -14.16493 -14.08045 -14.06390 -13.72652 -13.64881 -13.41050 -13.31254 -13.06404 -13.00471 -12.97343 -12.86588 -12.57046 -12.50119 -12.46117 -12.23828 -12.09209 -12.07247 -11.98140 -11.80422 -11.61370 -11.40907 -10.93658 -10.04205 -9.60103 -9.33485 -9.24293 -8.88119 -8.00208 -5.31041 0.83735 1.35925 1.36173 1.42567 1.42906 1.83546 2.22321 2.47493 2.50623 3.31623 3.61032 3.70103 3.79364 3.82996 3.92555 3.97533 4.04594 4.10936 4.15808 4.24775 4.30831 4.38145 4.40835 4.47830 4.50803 4.57292 4.65512 4.67475 4.76787 4.79533 4.81991 4.84795 4.89367 4.91324 4.97425 5.06899 5.08081 5.10538 5.14668 5.22863 5.24696 5.27440 5.31207 5.37060 5.42492 5.78639 5.82471 5.86890 6.18378 6.24446 6.41657 6.63749 7.10419 7.37930 7.87693 8.06088 9.21668 Molecular weight = 333.22amu Principal moments of inertia in cm(-1) A = 0.013418 B = 0.003642 C = 0.003368 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2086.179406 B = 7685.768199 C = 8311.340984 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.087 3.913 3 N -0.433 5.433 4 C 0.020 3.980 5 C -0.082 4.082 6 C -0.196 4.196 7 C -0.262 4.262 8 C 0.586 3.414 9 O -0.573 6.573 10 N -0.597 5.597 11 C 0.096 3.904 12 C -0.138 4.138 13 C 0.171 3.829 14 H 0.053 0.947 15 N -0.747 5.747 16 C -0.216 4.216 17 H 0.064 0.936 18 C -0.059 4.059 19 N -0.983 5.983 20 Si 0.941 3.059 21 H -0.279 1.279 22 H -0.297 1.297 23 H -0.264 1.264 24 C -0.124 4.124 25 C 0.141 3.859 26 H 0.047 0.953 27 C -0.118 4.118 28 C 0.093 3.907 29 C -0.090 4.090 30 H 0.056 0.944 31 H 0.098 0.902 32 H 0.049 0.951 33 H 0.113 0.887 34 H 0.104 0.896 35 H 0.079 0.921 36 H 0.087 0.913 37 H 0.083 0.917 38 H 0.155 0.845 39 H 0.039 0.961 40 H 0.125 0.875 41 H 0.077 0.923 42 H 0.063 0.937 43 H 0.361 0.639 44 H 0.256 0.744 45 H 0.084 0.916 46 H 0.079 0.921 47 H 0.057 0.943 48 H 0.058 0.942 49 H 0.058 0.942 50 H 0.075 0.925 51 H 0.090 0.910 52 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.496 -28.760 1.853 29.168 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.033 4.033 3 N -0.110 5.110 4 C -0.089 4.089 5 C -0.139 4.139 6 C -0.219 4.219 7 C -0.272 4.272 8 C 0.379 3.621 9 O -0.455 6.455 10 N -0.329 5.329 11 C -0.026 4.026 12 C -0.179 4.179 13 C 0.063 3.937 14 H 0.071 0.929 15 N -0.391 5.391 16 C -0.347 4.347 17 H 0.082 0.918 18 C -0.250 4.250 19 N -0.634 5.634 20 Si 0.770 3.230 21 H -0.206 1.206 22 H -0.224 1.224 23 H -0.190 1.190 24 C -0.163 4.163 25 C 0.038 3.962 26 H 0.065 0.935 27 C -0.175 4.175 28 C -0.024 4.024 29 C -0.147 4.147 30 H 0.075 0.925 31 H 0.117 0.883 32 H 0.068 0.932 33 H 0.131 0.869 34 H 0.122 0.878 35 H 0.097 0.903 36 H 0.106 0.894 37 H 0.102 0.898 38 H 0.173 0.827 39 H 0.057 0.943 40 H 0.143 0.857 41 H 0.096 0.904 42 H 0.081 0.919 43 H 0.195 0.805 44 H 0.065 0.935 45 H 0.103 0.897 46 H 0.097 0.903 47 H 0.075 0.925 48 H 0.077 0.923 49 H 0.077 0.923 50 H 0.093 0.907 51 H 0.109 0.891 52 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 4.589 -29.085 2.206 29.528 hybrid contribution -0.972 0.990 0.763 1.583 sum 3.617 -28.096 2.969 28.483 Atomic orbital electron populations 1.22130 0.93696 1.04169 1.02332 1.22207 0.96039 0.78874 1.06196 1.43877 1.49955 1.12912 1.04220 1.20702 1.06165 0.91880 0.90126 1.20441 1.03651 1.02369 0.87420 1.22059 1.09549 0.97723 0.92597 1.20205 1.17858 0.95025 0.94136 1.17748 0.76734 0.82133 0.85519 1.90710 1.48667 1.84818 1.21351 1.47964 1.58786 1.05213 1.20914 1.22292 0.94989 1.01772 0.83556 1.22317 0.99542 0.97245 0.98773 1.20406 0.87292 0.91350 0.94616 0.92928 1.42886 1.31095 1.47275 1.17863 1.19054 1.06210 1.11975 0.97470 0.91803 1.25291 0.99428 0.99330 1.00943 1.69847 1.25319 1.30705 1.37527 0.85625 0.77650 0.78295 0.81450 1.20573 1.22375 1.18967 1.22173 0.98124 0.99622 0.96380 1.21192 0.95982 0.87239 0.91790 0.93484 1.21988 1.00206 0.99363 0.95944 1.20374 1.01127 0.90646 0.90281 1.20519 1.03324 1.02351 0.88548 0.92476 0.88318 0.93224 0.86885 0.87768 0.90267 0.89407 0.89806 0.82731 0.94260 0.85734 0.90416 0.91870 0.80543 0.93528 0.89701 0.90280 0.92453 0.92269 0.92326 0.90687 0.89093 0.90199 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.45 10.24 71.98 0.74 -0.72 16 2 C 0.09 0.81 6.30 86.38 0.54 1.36 16 3 N -0.43 -7.89 2.69 -495.48 -1.33 -9.22 16 4 C 0.02 0.39 6.85 40.98 0.28 0.67 16 5 C -0.08 -0.95 10.06 71.24 0.72 -0.24 16 6 C -0.20 -4.91 8.67 23.62 0.20 -4.71 16 7 C -0.26 -7.69 5.81 -19.04 -0.11 -7.80 16 8 C 0.59 19.93 7.39 86.62 0.64 20.57 16 9 O -0.57 -20.88 10.73 -4.11 -0.04 -20.92 16 10 N -0.60 -20.31 2.97 -799.05 -2.37 -22.68 16 11 C 0.10 3.23 5.65 86.36 0.49 3.72 16 12 C -0.14 -4.60 5.66 30.67 0.17 -4.43 16 13 C 0.17 6.43 3.10 45.02 0.14 6.57 16 14 H 0.05 2.04 8.08 -2.39 -0.02 2.02 16 15 N -0.75 -34.68 4.11 -322.81 -1.33 -36.01 16 16 C -0.22 -12.12 10.41 84.03 0.87 -11.25 16 17 H 0.06 3.88 8.06 -2.91 -0.02 3.86 16 18 C -0.06 -3.46 5.50 84.86 0.47 -3.00 16 19 N -0.98 -63.06 13.97 21.65 0.30 -62.76 16 20 Si 0.94 46.95 27.73 68.60 1.90 48.85 16 21 H -0.28 -13.64 7.11 99.48 0.71 -12.93 16 22 H -0.30 -14.99 7.11 99.48 0.71 -14.29 16 23 H -0.26 -12.42 6.52 99.48 0.65 -11.77 16 24 C -0.12 -3.98 5.07 30.67 0.16 -3.82 16 25 C 0.14 4.81 3.19 44.98 0.14 4.95 16 26 H 0.05 1.79 6.64 -2.39 -0.02 1.77 16 27 C -0.12 -3.70 7.61 71.98 0.55 -3.15 16 28 C 0.09 2.24 6.88 41.78 0.29 2.52 16 29 C -0.09 -1.81 9.80 71.24 0.70 -1.11 16 30 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 31 H 0.10 0.40 8.14 -2.39 -0.02 0.38 16 32 H 0.05 0.59 8.14 -2.39 -0.02 0.57 16 33 H 0.11 0.59 6.90 -2.38 -0.02 0.57 16 34 H 0.10 0.71 6.87 -2.39 -0.02 0.69 16 35 H 0.08 0.86 8.14 -2.39 -0.02 0.84 16 36 H 0.09 0.95 8.14 -2.39 -0.02 0.93 16 37 H 0.08 0.61 6.94 -2.38 -0.02 0.60 16 38 H 0.16 3.74 6.19 -2.91 -0.02 3.72 16 39 H 0.04 1.56 7.74 -2.39 -0.02 1.55 16 40 H 0.13 3.73 3.01 -2.39 -0.01 3.72 16 41 H 0.08 2.20 8.14 -2.39 -0.02 2.18 16 42 H 0.06 2.27 8.14 -2.39 -0.02 2.25 16 43 H 0.36 16.78 3.92 -92.71 -0.36 16.41 16 44 H 0.26 15.75 8.31 -92.71 -0.77 14.98 16 45 H 0.08 2.42 8.14 -2.39 -0.02 2.40 16 46 H 0.08 2.46 8.14 -2.39 -0.02 2.44 16 47 H 0.06 1.56 8.14 -2.39 -0.02 1.54 16 48 H 0.06 2.02 6.67 -2.39 -0.02 2.00 16 49 H 0.06 1.91 6.84 -2.39 -0.02 1.89 16 50 H 0.07 1.43 8.14 -2.39 -0.02 1.42 16 51 H 0.09 1.22 6.92 -2.38 -0.02 1.20 16 52 H 0.08 2.01 6.37 -2.39 -0.02 1.99 16 Total: -1.00 -73.70 390.15 4.61 -69.08 By element: Atomic # 1 Polarization: 33.03 SS G_CDS: 0.50 Total: 33.53 kcal Atomic # 6 Polarization: -6.85 SS G_CDS: 6.99 Total: 0.14 kcal Atomic # 7 Polarization: -125.94 SS G_CDS: -4.73 Total: -130.67 kcal Atomic # 8 Polarization: -20.88 SS G_CDS: -0.04 Total: -20.92 kcal Atomic # 14 Polarization: 46.95 SS G_CDS: 1.90 Total: 48.85 kcal Total: -73.70 4.61 -69.08 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044667985.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.489 kcal (2) G-P(sol) polarization free energy of solvation -73.695 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.794 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.614 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.081 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.408 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds