Wall clock time and date at job start Tue Mar 31 2020 18:00:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46501 * 109.46749 * 2 1 4 4 C 1.36450 * 124.85188 * 269.97253 * 3 2 1 5 5 C 1.50694 * 125.57080 * 0.06725 * 4 3 2 6 6 C 1.34482 * 108.85389 * 179.77197 * 4 3 2 7 7 C 1.46684 * 106.33663 * 0.38403 * 6 4 3 8 8 C 1.47265 * 126.94495 * 179.88996 * 7 6 4 9 9 O 1.21632 * 119.99777 * 207.09697 * 8 7 6 10 10 N 1.34775 * 120.00072 * 27.09876 * 8 7 6 11 11 C 1.46920 * 120.63054 * 5.55689 * 10 8 7 12 12 C 1.53194 * 108.77595 * 233.58898 * 11 10 8 13 13 C 1.53039 * 109.31288 * 305.36579 * 12 11 10 14 14 H 1.09007 * 109.44865 * 301.35500 * 13 12 11 15 15 N 1.46495 * 109.46040 * 181.38674 * 13 12 11 16 16 C 1.36935 * 120.00000 * 84.93519 * 15 13 12 17 17 H 1.07995 * 120.00438 * 359.71780 * 16 15 13 18 18 C 1.38821 * 119.99794 * 180.02562 * 16 15 13 19 19 N 1.31619 * 120.00033 * 359.97438 * 18 16 15 20 20 Si 1.86803 * 119.99809 * 179.97438 * 18 16 15 21 21 H 1.48503 * 109.46899 * 359.97438 * 20 18 16 22 22 H 1.48491 * 109.47018 * 119.99678 * 20 18 16 23 23 H 1.48498 * 109.46974 * 239.99799 * 20 18 16 24 24 C 1.53044 * 109.53981 * 61.36272 * 13 12 11 25 25 C 1.46927 * 120.63000 * 185.53615 * 10 8 7 26 26 H 1.09001 * 109.70272 * 246.26761 * 25 10 8 27 27 C 1.53001 * 109.58627 * 6.62403 * 25 10 8 28 28 C 1.34664 * 124.84908 * 90.00501 * 3 2 1 29 29 C 1.50694 * 125.80030 * 359.97438 * 28 3 2 30 30 H 1.09005 * 109.47158 * 299.99731 * 1 2 3 31 31 H 1.09001 * 109.47712 * 60.00002 * 1 2 3 32 32 H 1.08999 * 109.47050 * 180.02562 * 1 2 3 33 33 H 1.08993 * 109.46807 * 240.00473 * 2 1 3 34 34 H 1.08998 * 109.47218 * 120.00013 * 2 1 3 35 35 H 1.08998 * 109.47620 * 89.99439 * 5 4 3 36 36 H 1.09001 * 109.47207 * 209.99311 * 5 4 3 37 37 H 1.09001 * 109.47497 * 329.99192 * 5 4 3 38 38 H 1.08008 * 126.83534 * 180.25651 * 6 4 3 39 39 H 1.09003 * 109.58691 * 353.37510 * 11 10 8 40 40 H 1.08997 * 109.58823 * 113.65584 * 11 10 8 41 41 H 1.09002 * 109.50015 * 185.41197 * 12 11 10 42 42 H 1.09000 * 109.49885 * 65.31914 * 12 11 10 43 43 H 0.97000 * 119.99676 * 264.92917 * 15 13 12 44 44 H 0.96995 * 119.99709 * 180.02562 * 19 18 16 45 45 H 1.08997 * 109.49199 * 58.58792 * 24 13 12 46 46 H 1.09000 * 109.49642 * 178.68352 * 24 13 12 47 47 H 1.09001 * 109.46854 * 172.50256 * 27 25 10 48 48 H 1.08995 * 109.47276 * 292.50871 * 27 25 10 49 49 H 1.09001 * 109.46989 * 52.50595 * 27 25 10 50 50 H 1.08999 * 109.47526 * 270.00170 * 29 28 3 51 51 H 1.09004 * 109.47227 * 30.00471 * 29 28 3 52 52 H 1.09004 * 109.46781 * 150.00092 * 29 28 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0182 1.3813 0.0000 4 6 2.2786 2.1162 -1.1198 5 6 2.1096 1.6404 -2.5396 6 6 2.7045 3.3368 -0.7491 7 6 2.7125 3.3432 0.7177 8 6 3.1059 4.4580 1.5958 9 8 3.5392 4.2312 2.7095 10 7 2.9859 5.7296 1.1655 11 6 2.3526 6.0259 -0.1266 12 6 3.3089 6.8861 -0.9587 13 6 3.7048 8.1260 -0.1537 14 1 2.8094 8.6898 0.1083 15 7 4.5933 8.9676 -0.9591 16 6 4.0657 9.8700 -1.8436 17 1 2.9947 9.9582 -1.9508 18 6 4.9076 10.6671 -2.6071 19 7 6.2129 10.5557 -2.4804 20 14 4.1879 11.8976 -3.8142 21 1 2.7052 11.8275 -3.7677 22 1 4.6308 13.2669 -3.4484 23 1 4.6554 11.5762 -5.1866 24 6 4.4291 7.6968 1.1243 25 6 3.4854 6.8458 1.9799 26 1 2.6487 7.4566 2.3189 27 6 4.2442 6.2981 3.1904 28 6 2.2748 2.1067 1.1051 29 6 2.1080 1.6361 2.5269 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 1.8932 -0.5137 -0.8900 34 1 1.8933 -0.5138 0.8900 35 1 1.1003 1.8690 -2.8818 36 1 2.8332 2.1444 -3.1803 37 1 2.2731 0.5637 -2.5839 38 1 2.9867 4.1499 -1.4016 39 1 2.1457 5.0948 -0.6543 40 1 1.4209 6.5670 0.0386 41 1 2.8139 7.1933 -1.8800 42 1 4.2014 6.3086 -1.1998 43 1 5.5553 8.8856 -0.8656 44 1 6.8012 11.1130 -3.0136 45 1 5.3110 7.1117 0.8636 46 1 4.7314 8.5810 1.6856 47 1 4.7261 7.1203 3.7195 48 1 3.5463 5.7948 3.8594 49 1 5.0009 5.5891 2.8545 50 1 1.0990 1.8654 2.8696 51 1 2.2721 0.5596 2.5750 52 1 2.8323 2.1429 3.1647 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001044667986.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:00:24 Heat of formation + Delta-G solvation = 38.300675 kcal Electronic energy + Delta-G solvation = -30041.023786 eV Core-core repulsion = 26235.208562 eV Total energy + Delta-G solvation = -3805.815225 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 333.216 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.69651 -39.80894 -37.12528 -34.61174 -34.31695 -32.83750 -32.44552 -31.80769 -29.52420 -29.33391 -28.98111 -26.98375 -25.03599 -24.13561 -24.03632 -22.78046 -22.04595 -21.02348 -20.05916 -19.16774 -17.98047 -17.06379 -16.71026 -16.16430 -15.74694 -15.43060 -14.85001 -14.75999 -14.64699 -14.10768 -13.73309 -13.64677 -13.47834 -13.39066 -13.29667 -13.15912 -13.10128 -12.91819 -12.64687 -12.53894 -12.36564 -12.23226 -11.91114 -11.76999 -11.69444 -11.62667 -11.47150 -11.39340 -11.05949 -10.88117 -10.73923 -10.57798 -10.27239 -10.15529 -9.73474 -9.64943 -8.87924 -8.79981 -8.52906 -8.16612 -7.97340 -6.91651 -5.73342 -3.01819 1.84091 2.32207 2.61058 3.42093 3.44767 3.50228 3.52559 3.64497 4.26117 4.46887 4.56814 4.61192 4.71621 4.73909 5.01070 5.03954 5.12821 5.14676 5.20146 5.31717 5.34343 5.35233 5.45418 5.49524 5.55449 5.56862 5.60476 5.64211 5.70721 5.72683 5.80277 5.87921 5.89562 6.01301 6.09293 6.15463 6.17832 6.31922 6.41042 6.54935 6.59523 6.63518 6.69444 6.77805 6.90291 7.03845 7.08936 7.17113 7.19831 7.73136 7.86857 8.45199 8.62710 9.56266 10.15189 10.50088 11.49450 Molecular weight = 333.22amu Principal moments of inertia in cm(-1) A = 0.015044 B = 0.003006 C = 0.002609 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1860.776656 B = 9312.105987 C =10729.222690 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.094 3.906 3 N -0.439 5.439 4 C 0.010 3.990 5 C -0.083 4.083 6 C -0.169 4.169 7 C -0.225 4.225 8 C 0.593 3.407 9 O -0.552 6.552 10 N -0.595 5.595 11 C 0.081 3.919 12 C -0.149 4.149 13 C 0.179 3.821 14 H 0.046 0.954 15 N -0.725 5.725 16 C -0.235 4.235 17 H 0.070 0.930 18 C -0.015 4.015 19 N -0.933 5.933 20 Si 0.905 3.095 21 H -0.280 1.280 22 H -0.292 1.292 23 H -0.292 1.292 24 C -0.134 4.134 25 C 0.148 3.852 26 H 0.067 0.933 27 C -0.133 4.133 28 C 0.095 3.905 29 C -0.094 4.094 30 H 0.063 0.937 31 H 0.064 0.936 32 H 0.073 0.927 33 H 0.090 0.910 34 H 0.089 0.911 35 H 0.070 0.930 36 H 0.082 0.918 37 H 0.061 0.939 38 H 0.158 0.842 39 H 0.108 0.892 40 H 0.058 0.942 41 H 0.072 0.928 42 H 0.059 0.941 43 H 0.383 0.617 44 H 0.254 0.746 45 H 0.062 0.938 46 H 0.073 0.927 47 H 0.040 0.960 48 H 0.071 0.929 49 H 0.064 0.936 50 H 0.070 0.930 51 H 0.061 0.939 52 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.865 -23.621 6.086 27.126 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.027 4.027 3 N -0.116 5.116 4 C -0.098 4.098 5 C -0.141 4.141 6 C -0.193 4.193 7 C -0.235 4.235 8 C 0.383 3.617 9 O -0.433 6.433 10 N -0.327 5.327 11 C -0.042 4.042 12 C -0.191 4.191 13 C 0.069 3.931 14 H 0.064 0.936 15 N -0.365 5.365 16 C -0.367 4.367 17 H 0.088 0.912 18 C -0.211 4.211 19 N -0.581 5.581 20 Si 0.736 3.264 21 H -0.206 1.206 22 H -0.219 1.219 23 H -0.220 1.220 24 C -0.173 4.173 25 C 0.045 3.955 26 H 0.085 0.915 27 C -0.190 4.190 28 C -0.020 4.020 29 C -0.152 4.152 30 H 0.082 0.918 31 H 0.083 0.917 32 H 0.092 0.908 33 H 0.108 0.892 34 H 0.108 0.892 35 H 0.089 0.911 36 H 0.101 0.899 37 H 0.080 0.920 38 H 0.175 0.825 39 H 0.126 0.874 40 H 0.077 0.923 41 H 0.091 0.909 42 H 0.077 0.923 43 H 0.217 0.783 44 H 0.064 0.936 45 H 0.081 0.919 46 H 0.092 0.908 47 H 0.059 0.941 48 H 0.090 0.910 49 H 0.083 0.917 50 H 0.089 0.911 51 H 0.079 0.921 52 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -11.859 -23.914 6.526 27.480 hybrid contribution -0.024 0.796 -1.015 1.290 sum -11.883 -23.118 5.511 26.571 Atomic orbital electron populations 1.22150 0.94251 1.02902 1.03363 1.21834 0.95625 0.80959 1.04315 1.43593 1.51237 1.11706 1.05108 1.20221 1.08459 0.92524 0.88577 1.20325 1.02944 1.00978 0.89809 1.22055 1.07310 0.96522 0.93406 1.20179 1.15240 0.94703 0.93331 1.17368 0.77124 0.81806 0.85391 1.90741 1.47567 1.84497 1.20530 1.47946 1.58784 1.05230 1.20758 1.22505 0.95676 1.02043 0.83935 1.22634 0.98820 0.98163 0.99434 1.20163 0.93563 0.90117 0.89238 0.93624 1.42448 1.05092 1.42869 1.46058 1.19284 0.91791 1.11932 1.13655 0.91167 1.24744 0.95331 1.00429 1.00590 1.69676 1.01442 1.42954 1.44065 0.86146 0.78006 0.81226 0.81007 1.20575 1.21943 1.21963 1.22284 0.98576 0.99190 0.97239 1.21248 0.96239 0.86902 0.91127 0.91509 1.22158 1.00956 0.99289 0.96598 1.20140 1.02038 0.90923 0.88941 1.20548 1.03789 1.00839 0.89991 0.91793 0.91726 0.90786 0.89178 0.89235 0.91108 0.89921 0.92048 0.82521 0.87426 0.92347 0.90947 0.92268 0.78311 0.93620 0.91882 0.90840 0.94122 0.90973 0.91682 0.91089 0.92061 0.87917 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.87 10.24 37.16 0.38 -0.49 16 2 C 0.09 0.58 6.30 -4.04 -0.03 0.55 16 3 N -0.44 -4.35 2.69 -107.97 -0.29 -4.64 16 4 C 0.01 0.10 6.85 -81.87 -0.56 -0.46 16 5 C -0.08 -0.62 10.06 36.00 0.36 -0.26 16 6 C -0.17 -2.18 8.67 -37.50 -0.33 -2.51 16 7 C -0.22 -3.22 5.81 -103.35 -0.60 -3.82 16 8 C 0.59 9.63 7.38 -12.59 -0.09 9.54 16 9 O -0.55 -9.70 10.72 5.25 0.06 -9.64 16 10 N -0.60 -9.42 2.97 -166.54 -0.49 -9.91 16 11 C 0.08 1.20 5.91 -3.71 -0.02 1.18 16 12 C -0.15 -2.64 5.54 -26.61 -0.15 -2.79 16 13 C 0.18 3.60 2.73 -67.89 -0.19 3.41 16 14 H 0.05 0.94 8.08 -51.93 -0.42 0.52 16 15 N -0.72 -18.24 5.12 -53.38 -0.27 -18.51 16 16 C -0.24 -6.50 9.93 -15.06 -0.15 -6.65 16 17 H 0.07 1.88 7.83 -52.49 -0.41 1.47 16 18 C -0.02 -0.43 5.50 -17.43 -0.10 -0.53 16 19 N -0.93 -28.37 13.06 55.49 0.72 -27.64 16 20 Si 0.90 22.40 29.55 -169.99 -5.02 17.38 16 21 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 22 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 23 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 24 C -0.13 -2.39 4.84 -26.61 -0.13 -2.52 16 25 C 0.15 2.37 3.49 -67.60 -0.24 2.13 16 26 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 27 C -0.13 -2.07 7.61 37.16 0.28 -1.79 16 28 C 0.10 1.15 6.88 -81.88 -0.56 0.59 16 29 C -0.09 -0.94 9.80 36.00 0.35 -0.59 16 30 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 32 H 0.07 0.24 8.14 -51.93 -0.42 -0.18 16 33 H 0.09 0.43 6.90 -51.93 -0.36 0.07 16 34 H 0.09 0.45 6.88 -51.93 -0.36 0.10 16 35 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 36 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 37 H 0.06 0.36 6.94 -51.93 -0.36 0.00 16 38 H 0.16 2.01 6.19 -52.48 -0.32 1.68 16 39 H 0.11 1.46 3.01 -51.93 -0.16 1.30 16 40 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 41 H 0.07 1.34 8.14 -51.93 -0.42 0.91 16 42 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 43 H 0.38 10.39 7.80 -40.82 -0.32 10.07 16 44 H 0.25 7.47 8.31 -40.82 -0.34 7.13 16 45 H 0.06 1.19 8.14 -51.93 -0.42 0.76 16 46 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16 47 H 0.04 0.58 8.14 -51.93 -0.42 0.15 16 48 H 0.07 1.15 6.67 -51.93 -0.35 0.81 16 49 H 0.06 1.12 6.82 -51.93 -0.35 0.77 16 50 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 51 H 0.06 0.46 6.92 -51.93 -0.36 0.10 16 52 H 0.10 1.24 6.38 -51.93 -0.33 0.91 16 LS Contribution 397.53 15.07 5.99 5.99 Total: -1.00 -32.74 397.53 -9.79 -42.54 By element: Atomic # 1 Polarization: 18.19 SS G_CDS: -8.73 Total: 9.46 kcal Atomic # 6 Polarization: -3.25 SS G_CDS: -1.76 Total: -5.01 kcal Atomic # 7 Polarization: -60.38 SS G_CDS: -0.33 Total: -60.71 kcal Atomic # 8 Polarization: -9.70 SS G_CDS: 0.06 Total: -9.64 kcal Atomic # 14 Polarization: 22.40 SS G_CDS: -5.02 Total: 17.38 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -32.74 -9.79 -42.54 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044667986.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.836 kcal (2) G-P(sol) polarization free energy of solvation -32.742 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.094 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.794 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.535 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.301 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds