Wall clock time and date at job start Tue Mar 31 2020 18:00:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46501 * 109.46749 * 2 1 4 4 C 1.36450 * 124.85188 * 269.97253 * 3 2 1 5 5 C 1.50694 * 125.57080 * 0.06725 * 4 3 2 6 6 C 1.34482 * 108.85389 * 179.77197 * 4 3 2 7 7 C 1.46684 * 106.33663 * 0.38403 * 6 4 3 8 8 C 1.47265 * 126.94495 * 179.88996 * 7 6 4 9 9 O 1.21632 * 119.99777 * 207.09697 * 8 7 6 10 10 N 1.34775 * 120.00072 * 27.09876 * 8 7 6 11 11 C 1.46920 * 120.63054 * 5.55689 * 10 8 7 12 12 C 1.53194 * 108.77595 * 233.58898 * 11 10 8 13 13 C 1.53039 * 109.31288 * 305.36579 * 12 11 10 14 14 H 1.09007 * 109.44865 * 301.35500 * 13 12 11 15 15 N 1.46495 * 109.46040 * 181.38674 * 13 12 11 16 16 C 1.36935 * 120.00000 * 84.93519 * 15 13 12 17 17 H 1.07995 * 120.00438 * 359.71780 * 16 15 13 18 18 C 1.38821 * 119.99794 * 180.02562 * 16 15 13 19 19 N 1.31619 * 120.00033 * 359.97438 * 18 16 15 20 20 Si 1.86803 * 119.99809 * 179.97438 * 18 16 15 21 21 H 1.48503 * 109.46899 * 359.97438 * 20 18 16 22 22 H 1.48491 * 109.47018 * 119.99678 * 20 18 16 23 23 H 1.48498 * 109.46974 * 239.99799 * 20 18 16 24 24 C 1.53044 * 109.53981 * 61.36272 * 13 12 11 25 25 C 1.46927 * 120.63000 * 185.53615 * 10 8 7 26 26 H 1.09001 * 109.70272 * 246.26761 * 25 10 8 27 27 C 1.53001 * 109.58627 * 6.62403 * 25 10 8 28 28 C 1.34664 * 124.84908 * 90.00501 * 3 2 1 29 29 C 1.50694 * 125.80030 * 359.97438 * 28 3 2 30 30 H 1.09005 * 109.47158 * 299.99731 * 1 2 3 31 31 H 1.09001 * 109.47712 * 60.00002 * 1 2 3 32 32 H 1.08999 * 109.47050 * 180.02562 * 1 2 3 33 33 H 1.08993 * 109.46807 * 240.00473 * 2 1 3 34 34 H 1.08998 * 109.47218 * 120.00013 * 2 1 3 35 35 H 1.08998 * 109.47620 * 89.99439 * 5 4 3 36 36 H 1.09001 * 109.47207 * 209.99311 * 5 4 3 37 37 H 1.09001 * 109.47497 * 329.99192 * 5 4 3 38 38 H 1.08008 * 126.83534 * 180.25651 * 6 4 3 39 39 H 1.09003 * 109.58691 * 353.37510 * 11 10 8 40 40 H 1.08997 * 109.58823 * 113.65584 * 11 10 8 41 41 H 1.09002 * 109.50015 * 185.41197 * 12 11 10 42 42 H 1.09000 * 109.49885 * 65.31914 * 12 11 10 43 43 H 0.97000 * 119.99676 * 264.92917 * 15 13 12 44 44 H 0.96995 * 119.99709 * 180.02562 * 19 18 16 45 45 H 1.08997 * 109.49199 * 58.58792 * 24 13 12 46 46 H 1.09000 * 109.49642 * 178.68352 * 24 13 12 47 47 H 1.09001 * 109.46854 * 172.50256 * 27 25 10 48 48 H 1.08995 * 109.47276 * 292.50871 * 27 25 10 49 49 H 1.09001 * 109.46989 * 52.50595 * 27 25 10 50 50 H 1.08999 * 109.47526 * 270.00170 * 29 28 3 51 51 H 1.09004 * 109.47227 * 30.00471 * 29 28 3 52 52 H 1.09004 * 109.46781 * 150.00092 * 29 28 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0182 1.3813 0.0000 4 6 2.2786 2.1162 -1.1198 5 6 2.1096 1.6404 -2.5396 6 6 2.7045 3.3368 -0.7491 7 6 2.7125 3.3432 0.7177 8 6 3.1059 4.4580 1.5958 9 8 3.5392 4.2312 2.7095 10 7 2.9859 5.7296 1.1655 11 6 2.3526 6.0259 -0.1266 12 6 3.3089 6.8861 -0.9587 13 6 3.7048 8.1260 -0.1537 14 1 2.8094 8.6898 0.1083 15 7 4.5933 8.9676 -0.9591 16 6 4.0657 9.8700 -1.8436 17 1 2.9947 9.9582 -1.9508 18 6 4.9076 10.6671 -2.6071 19 7 6.2129 10.5557 -2.4804 20 14 4.1879 11.8976 -3.8142 21 1 2.7052 11.8275 -3.7677 22 1 4.6308 13.2669 -3.4484 23 1 4.6554 11.5762 -5.1866 24 6 4.4291 7.6968 1.1243 25 6 3.4854 6.8458 1.9799 26 1 2.6487 7.4566 2.3189 27 6 4.2442 6.2981 3.1904 28 6 2.2748 2.1067 1.1051 29 6 2.1080 1.6361 2.5269 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 1.8932 -0.5137 -0.8900 34 1 1.8933 -0.5138 0.8900 35 1 1.1003 1.8690 -2.8818 36 1 2.8332 2.1444 -3.1803 37 1 2.2731 0.5637 -2.5839 38 1 2.9867 4.1499 -1.4016 39 1 2.1457 5.0948 -0.6543 40 1 1.4209 6.5670 0.0386 41 1 2.8139 7.1933 -1.8800 42 1 4.2014 6.3086 -1.1998 43 1 5.5553 8.8856 -0.8656 44 1 6.8012 11.1130 -3.0136 45 1 5.3110 7.1117 0.8636 46 1 4.7314 8.5810 1.6856 47 1 4.7261 7.1203 3.7195 48 1 3.5463 5.7948 3.8594 49 1 5.0009 5.5891 2.8545 50 1 1.0990 1.8654 2.8696 51 1 2.2721 0.5596 2.5750 52 1 2.8323 2.1429 3.1647 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001044667986.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:00:23 Heat of formation + Delta-G solvation = 20.068950 kcal Electronic energy + Delta-G solvation = -30041.814373 eV Core-core repulsion = 26235.208562 eV Total energy + Delta-G solvation = -3806.605812 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 333.216 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -42.57784 -41.05312 -38.57623 -36.13974 -35.28260 -33.75743 -33.72329 -33.44277 -31.00505 -30.20458 -29.89299 -28.44255 -26.18337 -25.70550 -24.80952 -24.29473 -23.10030 -22.13679 -21.47576 -20.33536 -19.16377 -18.92001 -17.70352 -17.10684 -16.95735 -16.69749 -16.21629 -15.93171 -15.70417 -15.46484 -15.36275 -14.84968 -14.77526 -14.48021 -14.25742 -14.13148 -14.05997 -13.78547 -13.65494 -13.47804 -13.33670 -13.22291 -13.07413 -12.96931 -12.92379 -12.84694 -12.58529 -12.49201 -12.38802 -12.21701 -12.10215 -12.06726 -12.00403 -11.82278 -11.62326 -11.33548 -10.87604 -10.04326 -9.60405 -9.32816 -8.99510 -8.87571 -7.91732 -5.20598 0.84729 1.42241 1.48668 1.49370 1.59429 1.84475 2.24282 2.49032 2.58061 3.41376 3.70081 3.76559 3.80500 3.84026 3.93122 4.03863 4.12978 4.14445 4.18524 4.27686 4.32004 4.37824 4.42582 4.50925 4.57825 4.62005 4.66500 4.70450 4.74815 4.79157 4.82003 4.85749 4.86655 4.90885 4.97915 5.06320 5.08448 5.09486 5.14822 5.19650 5.26102 5.31425 5.36301 5.44115 5.51915 5.56049 5.79148 5.87090 6.18830 6.29757 6.42099 6.63117 7.35541 7.39081 8.10727 8.35084 9.32245 Molecular weight = 333.22amu Principal moments of inertia in cm(-1) A = 0.015044 B = 0.003006 C = 0.002609 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1860.776656 B = 9312.105987 C =10729.222690 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.085 3.915 3 N -0.432 5.432 4 C 0.020 3.980 5 C -0.082 4.082 6 C -0.198 4.198 7 C -0.262 4.262 8 C 0.587 3.413 9 O -0.572 6.572 10 N -0.600 5.600 11 C 0.091 3.909 12 C -0.135 4.135 13 C 0.175 3.825 14 H 0.046 0.954 15 N -0.737 5.737 16 C -0.233 4.233 17 H 0.078 0.922 18 C -0.079 4.079 19 N -0.972 5.972 20 Si 0.972 3.028 21 H -0.263 1.263 22 H -0.296 1.296 23 H -0.295 1.295 24 C -0.122 4.122 25 C 0.151 3.849 26 H 0.080 0.920 27 C -0.120 4.120 28 C 0.096 3.904 29 C -0.090 4.090 30 H 0.052 0.948 31 H 0.058 0.942 32 H 0.097 0.903 33 H 0.110 0.890 34 H 0.104 0.896 35 H 0.083 0.917 36 H 0.081 0.919 37 H 0.082 0.918 38 H 0.150 0.850 39 H 0.126 0.874 40 H 0.070 0.930 41 H 0.065 0.935 42 H 0.044 0.956 43 H 0.370 0.630 44 H 0.249 0.751 45 H 0.047 0.953 46 H 0.070 0.930 47 H 0.053 0.947 48 H 0.069 0.931 49 H 0.044 0.956 50 H 0.081 0.919 51 H 0.088 0.912 52 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.213 -25.856 5.653 30.041 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.034 4.034 3 N -0.109 5.109 4 C -0.088 4.088 5 C -0.139 4.139 6 C -0.221 4.221 7 C -0.272 4.272 8 C 0.379 3.621 9 O -0.455 6.455 10 N -0.331 5.331 11 C -0.031 4.031 12 C -0.176 4.176 13 C 0.067 3.933 14 H 0.064 0.936 15 N -0.376 5.376 16 C -0.364 4.364 17 H 0.096 0.904 18 C -0.271 4.271 19 N -0.624 5.624 20 Si 0.801 3.199 21 H -0.188 1.188 22 H -0.223 1.223 23 H -0.222 1.222 24 C -0.161 4.161 25 C 0.047 3.953 26 H 0.098 0.902 27 C -0.177 4.177 28 C -0.022 4.022 29 C -0.147 4.147 30 H 0.071 0.929 31 H 0.077 0.923 32 H 0.116 0.884 33 H 0.128 0.872 34 H 0.122 0.878 35 H 0.102 0.898 36 H 0.100 0.900 37 H 0.101 0.899 38 H 0.167 0.833 39 H 0.143 0.857 40 H 0.088 0.912 41 H 0.084 0.916 42 H 0.062 0.938 43 H 0.201 0.799 44 H 0.058 0.942 45 H 0.066 0.934 46 H 0.089 0.911 47 H 0.072 0.928 48 H 0.088 0.912 49 H 0.063 0.937 50 H 0.099 0.901 51 H 0.107 0.893 52 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -14.266 -26.194 6.103 30.445 hybrid contribution 0.679 1.354 -0.835 1.730 sum -13.588 -24.840 5.268 28.799 Atomic orbital electron populations 1.22119 0.93328 1.04189 1.02516 1.22216 0.96336 0.78820 1.06065 1.43876 1.49961 1.12871 1.04173 1.20657 1.06242 0.91826 0.90119 1.20432 1.03718 1.02274 0.87503 1.22027 1.09488 0.97802 0.92782 1.20190 1.17893 0.95220 0.93882 1.17742 0.76640 0.82230 0.85513 1.90720 1.48440 1.84825 1.21514 1.47996 1.58962 1.05270 1.20912 1.22468 0.94895 1.02430 0.83314 1.22392 0.98835 0.97183 0.99184 1.20378 0.92858 0.90301 0.89784 0.93617 1.42657 1.05004 1.43498 1.46455 1.19663 0.92152 1.11483 1.13132 0.90392 1.25564 0.95710 1.02856 1.02967 1.69840 1.02778 1.44290 1.45465 0.85088 0.78113 0.78363 0.78317 1.18767 1.22350 1.22215 1.22136 0.98253 0.99160 0.96521 1.21215 0.96180 0.87000 0.90868 0.90211 1.21995 1.00258 0.99121 0.96306 1.20400 1.00954 0.90488 0.90311 1.20529 1.03595 1.02244 0.88348 0.92868 0.92335 0.88433 0.87202 0.87822 0.89790 0.89984 0.89891 0.83315 0.85699 0.91187 0.91644 0.93763 0.79884 0.94189 0.93390 0.91103 0.92793 0.91200 0.93694 0.90075 0.89295 0.90303 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.15 10.24 71.98 0.74 -0.41 16 2 C 0.09 0.74 6.30 86.38 0.54 1.28 16 3 N -0.43 -7.57 2.69 -495.51 -1.33 -8.90 16 4 C 0.02 0.39 6.85 40.98 0.28 0.68 16 5 C -0.08 -0.99 10.06 71.23 0.72 -0.28 16 6 C -0.20 -5.00 8.67 23.62 0.20 -4.80 16 7 C -0.26 -7.46 5.81 -19.04 -0.11 -7.57 16 8 C 0.59 19.29 7.38 86.62 0.64 19.93 16 9 O -0.57 -20.50 10.72 -4.13 -0.04 -20.54 16 10 N -0.60 -19.05 2.97 -799.04 -2.37 -21.42 16 11 C 0.09 2.68 5.91 86.36 0.51 3.19 16 12 C -0.14 -4.84 5.54 30.67 0.17 -4.67 16 13 C 0.18 7.11 2.73 45.02 0.12 7.23 16 14 H 0.05 1.87 8.08 -2.38 -0.02 1.85 16 15 N -0.74 -37.93 5.12 -322.81 -1.65 -39.59 16 16 C -0.23 -12.92 9.93 84.04 0.83 -12.09 16 17 H 0.08 4.14 7.83 -2.91 -0.02 4.11 16 18 C -0.08 -4.58 5.50 84.86 0.47 -4.12 16 19 N -0.97 -60.55 13.06 21.65 0.28 -60.27 16 20 Si 0.97 46.40 29.55 68.60 2.03 48.43 16 21 H -0.26 -11.69 7.11 99.48 0.71 -10.98 16 22 H -0.30 -14.22 7.11 99.48 0.71 -13.51 16 23 H -0.29 -14.09 7.11 99.48 0.71 -13.38 16 24 C -0.12 -4.43 4.84 30.67 0.15 -4.29 16 25 C 0.15 4.82 3.49 44.98 0.16 4.98 16 26 H 0.08 2.37 8.14 -2.39 -0.02 2.35 16 27 C -0.12 -3.75 7.61 71.98 0.55 -3.21 16 28 C 0.10 2.19 6.88 41.78 0.29 2.48 16 29 C -0.09 -1.66 9.80 71.23 0.70 -0.97 16 30 H 0.05 0.50 8.14 -2.38 -0.02 0.49 16 31 H 0.06 0.50 8.14 -2.39 -0.02 0.48 16 32 H 0.10 0.25 8.14 -2.39 -0.02 0.23 16 33 H 0.11 0.56 6.90 -2.39 -0.02 0.55 16 34 H 0.10 0.64 6.88 -2.39 -0.02 0.63 16 35 H 0.08 0.84 8.14 -2.39 -0.02 0.82 16 36 H 0.08 1.03 8.14 -2.39 -0.02 1.02 16 37 H 0.08 0.66 6.94 -2.39 -0.02 0.64 16 38 H 0.15 3.86 6.19 -2.91 -0.02 3.84 16 39 H 0.13 3.35 3.01 -2.39 -0.01 3.35 16 40 H 0.07 1.91 8.14 -2.39 -0.02 1.89 16 41 H 0.06 2.42 8.14 -2.39 -0.02 2.40 16 42 H 0.04 1.70 8.14 -2.39 -0.02 1.68 16 43 H 0.37 20.78 7.80 -92.71 -0.72 20.06 16 44 H 0.25 15.05 8.31 -92.71 -0.77 14.27 16 45 H 0.05 1.88 8.14 -2.39 -0.02 1.86 16 46 H 0.07 2.60 8.14 -2.39 -0.02 2.58 16 47 H 0.05 1.51 8.14 -2.39 -0.02 1.50 16 48 H 0.07 2.24 6.67 -2.39 -0.02 2.22 16 49 H 0.04 1.58 6.82 -2.39 -0.02 1.57 16 50 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 51 H 0.09 1.10 6.92 -2.39 -0.02 1.09 16 52 H 0.08 1.89 6.38 -2.38 -0.02 1.87 16 Total: -1.00 -72.19 397.53 4.06 -68.13 By element: Atomic # 1 Polarization: 36.58 SS G_CDS: 0.19 Total: 36.77 kcal Atomic # 6 Polarization: -9.57 SS G_CDS: 6.95 Total: -2.62 kcal Atomic # 7 Polarization: -125.10 SS G_CDS: -5.08 Total: -130.17 kcal Atomic # 8 Polarization: -20.50 SS G_CDS: -0.04 Total: -20.54 kcal Atomic # 14 Polarization: 46.40 SS G_CDS: 2.03 Total: 48.43 kcal Total: -72.19 4.06 -68.13 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044667986.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.199 kcal (2) G-P(sol) polarization free energy of solvation -72.186 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.013 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.056 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.130 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.069 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds