Wall clock time and date at job start Tue Mar 31 2020 18:06:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46500 * 109.46864 * 2 1 4 4 C 1.36447 * 124.85172 * 270.19483 * 3 2 1 5 5 C 1.50699 * 125.57387 * 0.02562 * 4 3 2 6 6 C 1.34489 * 108.85624 * 180.27403 * 4 3 2 7 7 C 1.46687 * 106.33070 * 359.73851 * 6 4 3 8 8 C 1.47262 * 126.94037 * 180.02562 * 7 6 4 9 9 O 1.21626 * 120.00293 * 180.02562 * 8 7 6 10 10 N 1.34771 * 120.00172 * 359.97438 * 8 7 6 11 11 C 1.46507 * 120.00215 * 180.02562 * 10 8 7 12 12 H 1.08999 * 109.20308 * 35.64170 * 11 10 8 13 13 C 1.50127 * 109.20642 * 154.99799 * 11 10 8 14 14 C 1.52525 * 105.41532 * 218.02500 * 13 11 10 15 15 C 1.46242 * 114.27972 * 270.59920 * 14 13 11 16 16 N 1.50166 * 107.53288 * 58.40607 * 15 14 13 17 17 C 1.36945 * 120.53836 * 109.56759 * 16 15 14 18 18 H 1.07997 * 119.99875 * 156.71168 * 17 16 15 19 19 C 1.38809 * 119.99797 * 336.70570 * 17 16 15 20 20 N 1.31618 * 120.00252 * 340.40857 * 19 17 16 21 21 Si 1.86797 * 120.00040 * 160.40107 * 19 17 16 22 22 H 1.48495 * 109.47188 * 90.00036 * 21 19 17 23 23 H 1.48491 * 109.47374 * 210.00669 * 21 19 17 24 24 H 1.48510 * 109.46787 * 330.00449 * 21 19 17 25 25 C 1.43432 * 118.92730 * 289.58933 * 16 15 14 26 26 C 1.54837 * 109.20672 * 276.32439 * 11 10 8 27 27 C 1.34654 * 124.84888 * 90.00071 * 3 2 1 28 28 C 1.50703 * 125.80596 * 359.97438 * 27 3 2 29 29 H 1.09007 * 109.47267 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.47380 * 299.99877 * 1 2 3 31 31 H 1.09004 * 109.47069 * 60.00252 * 1 2 3 32 32 H 1.09002 * 109.47018 * 239.99873 * 2 1 3 33 33 H 1.08992 * 109.46959 * 120.00216 * 2 1 3 34 34 H 1.08998 * 109.47598 * 270.27915 * 5 4 3 35 35 H 1.09007 * 109.46608 * 30.28129 * 5 4 3 36 36 H 1.09004 * 109.47482 * 150.27351 * 5 4 3 37 37 H 1.07994 * 126.83374 * 179.72322 * 6 4 3 38 38 H 0.97003 * 120.00122 * 359.97438 * 10 8 7 39 39 H 1.08997 * 110.25706 * 337.00216 * 13 11 10 40 40 H 1.09005 * 110.24819 * 99.05340 * 13 11 10 41 41 H 1.08994 * 108.52586 * 31.84228 * 14 13 11 42 42 H 1.08998 * 108.52229 * 149.51645 * 14 13 11 43 43 H 1.08998 * 109.84777 * 177.91401 * 15 14 13 44 44 H 1.09005 * 109.84615 * 298.83642 * 15 14 13 45 45 H 0.97001 * 120.00489 * 179.97438 * 20 19 17 46 46 H 1.08993 * 108.16357 * 213.28553 * 25 16 15 47 47 H 1.09005 * 108.15840 * 330.06576 * 25 16 15 48 48 H 1.09001 * 109.36163 * 320.98964 * 26 11 10 49 49 H 1.08993 * 109.35834 * 80.58158 * 26 11 10 50 50 H 1.08998 * 109.47286 * 269.71909 * 28 27 3 51 51 H 1.08995 * 109.47066 * 149.71689 * 28 27 3 52 52 H 1.09003 * 109.46377 * 29.71539 * 28 27 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2746 2.1177 -1.1197 5 6 2.1012 1.6434 -2.5396 6 6 2.7124 3.3341 -0.7492 7 6 2.7177 3.3413 0.7177 8 6 3.1184 4.4535 1.5958 9 8 3.0736 4.3211 2.8040 10 7 3.5358 5.6179 1.0607 11 6 3.9350 6.7242 1.9342 12 1 4.4296 6.3223 2.8185 13 6 4.8908 7.6161 1.1962 14 6 5.9221 8.0509 2.2324 15 6 5.5702 9.2725 2.9552 16 7 4.2526 9.0326 3.6345 17 6 4.1843 8.9089 4.9966 18 1 3.2568 9.1116 5.5114 19 6 5.3072 8.5228 5.7156 20 7 6.3015 7.9130 5.1059 21 14 5.4072 8.8691 7.5484 22 1 4.8374 7.7225 8.3006 23 1 6.8269 9.0610 7.9392 24 1 4.6367 10.0992 7.8626 25 6 3.0668 8.9347 2.8335 26 6 2.6739 7.5099 2.3699 27 6 2.2747 2.1067 1.1051 28 6 2.1078 1.6362 2.5270 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5138 0.8899 34 1 3.0266 1.1818 -2.8841 35 1 1.2929 0.9133 -2.5826 36 1 1.8585 2.4921 -3.1791 37 1 3.0025 4.1442 -1.4017 38 1 3.5726 5.7233 0.0971 39 1 5.3752 7.0652 0.3900 40 1 4.3659 8.4849 0.7989 41 1 6.0477 7.2449 2.9553 42 1 6.8741 8.2124 1.7268 43 1 6.3349 9.4956 3.6993 44 1 5.4811 10.1037 2.2557 45 1 7.0863 7.6435 5.6082 46 1 2.2356 9.3472 3.4052 47 1 3.2048 9.5517 1.9455 48 1 1.9840 7.5809 1.5290 49 1 2.1866 6.9843 3.1910 50 1 1.1005 1.8701 2.8713 51 1 2.8354 2.1392 3.1639 52 1 2.2670 0.5589 2.5741 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001052538918.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:06:26 Heat of formation + Delta-G solvation = 28.282818 kcal Electronic energy + Delta-G solvation = -29895.734978 eV Core-core repulsion = 26089.485347 eV Total energy + Delta-G solvation = -3806.249631 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 333.216 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -41.52459 -39.05756 -37.36345 -34.41198 -34.28366 -32.70986 -32.07883 -31.43948 -30.10638 -29.37171 -28.90455 -26.10249 -24.95215 -24.05706 -23.71568 -22.76618 -21.48114 -20.11546 -19.64951 -18.98259 -18.38311 -16.87444 -16.53040 -15.91964 -15.39277 -15.19303 -14.91557 -14.83705 -14.28802 -13.90154 -13.65353 -13.56627 -13.51356 -13.26742 -13.26328 -13.07991 -12.94079 -12.63513 -12.46134 -12.27406 -12.17077 -12.10080 -11.76603 -11.68765 -11.60705 -11.34827 -11.31186 -11.15017 -10.67388 -10.46547 -10.25147 -10.06047 -9.90191 -9.64102 -9.37000 -9.22725 -9.14045 -8.61431 -8.38122 -8.18881 -7.90847 -6.58092 -5.66397 -3.04530 1.94145 2.38390 2.67046 3.47979 3.54728 3.56976 3.96004 4.02332 4.32078 4.52952 4.61444 4.63172 4.77117 4.80701 5.00266 5.19005 5.20344 5.25884 5.29316 5.42401 5.48428 5.51680 5.57088 5.61227 5.69950 5.71014 5.73060 5.88296 5.91457 6.04307 6.09957 6.17129 6.32593 6.41443 6.47893 6.55334 6.63822 6.83361 6.86016 7.01274 7.05403 7.08721 7.13408 7.22218 7.23539 7.32875 7.41144 7.70372 7.87207 8.09408 8.24371 8.55655 8.96746 9.32044 9.99678 10.52291 11.41399 Molecular weight = 333.22amu Principal moments of inertia in cm(-1) A = 0.018052 B = 0.002860 C = 0.002632 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1550.726863 B = 9787.808119 C =10634.407671 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.095 3.905 3 N -0.440 5.440 4 C 0.005 3.995 5 C -0.081 4.081 6 C -0.166 4.166 7 C -0.225 4.225 8 C 0.582 3.418 9 O -0.544 6.544 10 N -0.724 5.724 11 C 0.158 3.842 12 H 0.101 0.899 13 C -0.120 4.120 14 C -0.129 4.129 15 C 0.166 3.834 16 N -0.588 5.588 17 C -0.246 4.246 18 H 0.066 0.934 19 C 0.002 3.998 20 N -0.899 5.899 21 Si 0.898 3.102 22 H -0.289 1.289 23 H -0.291 1.291 24 H -0.282 1.282 25 C 0.162 3.838 26 C -0.150 4.150 27 C 0.101 3.899 28 C -0.092 4.092 29 H 0.073 0.927 30 H 0.065 0.935 31 H 0.062 0.938 32 H 0.089 0.911 33 H 0.091 0.909 34 H 0.068 0.932 35 H 0.061 0.939 36 H 0.079 0.921 37 H 0.142 0.858 38 H 0.389 0.611 39 H 0.052 0.948 40 H 0.061 0.939 41 H 0.103 0.897 42 H 0.028 0.972 43 H 0.090 0.910 44 H 0.005 0.995 45 H 0.251 0.749 46 H 0.032 0.968 47 H 0.027 0.973 48 H 0.043 0.957 49 H 0.055 0.945 50 H 0.074 0.926 51 H 0.103 0.897 52 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.486 -14.917 -16.843 24.046 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.027 4.027 3 N -0.118 5.118 4 C -0.103 4.103 5 C -0.139 4.139 6 C -0.190 4.190 7 C -0.235 4.235 8 C 0.370 3.630 9 O -0.423 6.423 10 N -0.374 5.374 11 C 0.055 3.945 12 H 0.119 0.881 13 C -0.159 4.159 14 C -0.168 4.168 15 C 0.042 3.958 16 N -0.309 5.309 17 C -0.376 4.376 18 H 0.084 0.916 19 C -0.195 4.195 20 N -0.545 5.545 21 Si 0.729 3.271 22 H -0.216 1.216 23 H -0.218 1.218 24 H -0.207 1.207 25 C 0.032 3.968 26 C -0.192 4.192 27 C -0.015 4.015 28 C -0.150 4.150 29 H 0.092 0.908 30 H 0.084 0.916 31 H 0.081 0.919 32 H 0.107 0.893 33 H 0.109 0.891 34 H 0.087 0.913 35 H 0.080 0.920 36 H 0.098 0.902 37 H 0.160 0.840 38 H 0.222 0.778 39 H 0.071 0.929 40 H 0.080 0.920 41 H 0.121 0.879 42 H 0.047 0.953 43 H 0.108 0.892 44 H 0.023 0.977 45 H 0.061 0.939 46 H 0.050 0.950 47 H 0.046 0.954 48 H 0.062 0.938 49 H 0.074 0.926 50 H 0.093 0.907 51 H 0.122 0.878 52 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -8.454 -15.353 -15.895 23.661 hybrid contribution 0.042 -0.068 0.315 0.325 sum -8.412 -15.422 -15.579 23.480 Atomic orbital electron populations 1.22167 0.94301 1.02900 1.03394 1.21830 0.95616 0.80930 1.04315 1.43589 1.51399 1.11662 1.05112 1.20115 1.08882 0.92743 0.88511 1.20295 1.01847 1.01851 0.89882 1.21759 1.07143 0.96812 0.93314 1.20300 1.14839 0.95269 0.93095 1.17348 0.76815 0.81708 0.87100 1.90771 1.54706 1.82273 1.14530 1.46271 1.67556 1.13799 1.09757 1.21189 0.94961 0.84999 0.93342 0.88122 1.21353 0.97797 0.98736 0.97966 1.20935 0.94905 1.03762 0.97231 1.20159 0.88851 0.92462 0.94321 1.44269 1.02105 1.81918 1.02646 1.19179 0.97435 1.39122 0.81848 0.91589 1.24871 0.98468 0.98638 0.97570 1.69963 1.08657 1.40949 1.34889 0.86351 0.76664 0.78098 0.86009 1.21587 1.21754 1.20746 1.20356 0.90495 0.92247 0.93669 1.23289 0.96415 1.00090 0.99415 1.20270 1.01045 0.91130 0.89006 1.20560 1.04388 1.00256 0.89748 0.90769 0.91628 0.91858 0.89280 0.89110 0.91291 0.92036 0.90196 0.84042 0.77821 0.92929 0.92048 0.87876 0.95344 0.89213 0.97667 0.93865 0.94965 0.95442 0.93844 0.92594 0.90709 0.87804 0.92361 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.03 10.24 37.16 0.38 -0.65 16 2 C 0.09 0.66 6.09 -4.04 -0.02 0.64 16 3 N -0.44 -4.79 2.68 -107.96 -0.29 -5.08 16 4 C 0.00 0.05 6.85 -81.86 -0.56 -0.51 16 5 C -0.08 -0.56 9.80 36.01 0.35 -0.20 16 6 C -0.17 -2.11 10.45 -37.50 -0.39 -2.50 16 7 C -0.23 -3.57 6.29 -103.35 -0.65 -4.22 16 8 C 0.58 11.18 7.76 -12.60 -0.10 11.08 16 9 O -0.54 -12.59 14.48 5.25 0.08 -12.51 16 10 N -0.72 -12.77 4.97 -55.38 -0.28 -13.04 16 11 C 0.16 3.25 2.22 -68.39 -0.15 3.09 16 12 H 0.10 2.62 6.26 -51.93 -0.33 2.30 16 13 C -0.12 -2.25 5.34 -28.40 -0.15 -2.40 16 14 C -0.13 -2.84 5.02 -30.19 -0.15 -2.99 16 15 C 0.17 3.93 5.24 -5.20 -0.03 3.90 16 16 N -0.59 -14.87 2.60 -175.08 -0.46 -15.32 16 17 C -0.25 -6.90 9.63 -15.06 -0.14 -7.05 16 18 H 0.07 1.86 7.89 -52.49 -0.41 1.44 16 19 C 0.00 0.07 4.91 -17.43 -0.09 -0.02 16 20 N -0.90 -25.74 9.43 55.49 0.52 -25.22 16 21 Si 0.90 22.36 29.60 -169.99 -5.03 17.33 16 22 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 23 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 24 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 25 C 0.16 3.55 5.18 -4.66 -0.02 3.53 16 26 C -0.15 -3.13 5.98 -24.76 -0.15 -3.27 16 27 C 0.10 1.41 6.89 -81.88 -0.56 0.85 16 28 C -0.09 -1.19 9.52 36.01 0.34 -0.84 16 29 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 30 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 32 H 0.09 0.47 7.53 -51.93 -0.39 0.07 16 33 H 0.09 0.56 6.87 -51.93 -0.36 0.21 16 34 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 35 H 0.06 0.34 7.62 -51.93 -0.40 -0.05 16 36 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 37 H 0.14 1.50 7.69 -52.49 -0.40 1.10 16 38 H 0.39 5.60 7.60 -40.82 -0.31 5.29 16 39 H 0.05 0.87 7.85 -51.93 -0.41 0.46 16 40 H 0.06 1.09 6.28 -51.93 -0.33 0.77 16 41 H 0.10 2.68 5.29 -51.93 -0.27 2.41 16 42 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 43 H 0.09 2.37 6.05 -51.93 -0.31 2.06 16 44 H 0.01 0.11 8.13 -51.93 -0.42 -0.31 16 45 H 0.25 7.06 8.31 -40.82 -0.34 6.72 16 46 H 0.03 0.71 7.99 -51.93 -0.41 0.29 16 47 H 0.03 0.55 6.88 -51.93 -0.36 0.19 16 48 H 0.04 0.80 8.13 -51.93 -0.42 0.38 16 49 H 0.06 1.32 8.14 -51.93 -0.42 0.89 16 50 H 0.07 0.92 8.14 -51.93 -0.42 0.49 16 51 H 0.10 1.65 6.46 -51.93 -0.34 1.31 16 52 H 0.06 0.57 6.91 -51.93 -0.36 0.21 16 LS Contribution 397.36 15.07 5.99 5.99 Total: -1.00 -33.02 397.36 -10.31 -43.33 By element: Atomic # 1 Polarization: 14.84 SS G_CDS: -8.75 Total: 6.09 kcal Atomic # 6 Polarization: 0.53 SS G_CDS: -2.10 Total: -1.56 kcal Atomic # 7 Polarization: -58.17 SS G_CDS: -0.50 Total: -58.66 kcal Atomic # 8 Polarization: -12.59 SS G_CDS: 0.08 Total: -12.51 kcal Atomic # 14 Polarization: 22.36 SS G_CDS: -5.03 Total: 17.33 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -33.02 -10.31 -43.33 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001052538918.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.612 kcal (2) G-P(sol) polarization free energy of solvation -33.020 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.592 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.309 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.329 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.283 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds