Wall clock time and date at job start Tue Mar 31 2020 18:06:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46500 * 109.46864 * 2 1 4 4 C 1.36447 * 124.85172 * 270.19483 * 3 2 1 5 5 C 1.50699 * 125.57387 * 0.02562 * 4 3 2 6 6 C 1.34489 * 108.85624 * 180.27403 * 4 3 2 7 7 C 1.46687 * 106.33070 * 359.73851 * 6 4 3 8 8 C 1.47262 * 126.94037 * 180.02562 * 7 6 4 9 9 O 1.21626 * 120.00293 * 180.02562 * 8 7 6 10 10 N 1.34771 * 120.00172 * 359.97438 * 8 7 6 11 11 C 1.46507 * 120.00215 * 180.02562 * 10 8 7 12 12 H 1.08999 * 109.20308 * 35.64170 * 11 10 8 13 13 C 1.50127 * 109.20642 * 154.99799 * 11 10 8 14 14 C 1.52525 * 105.41532 * 218.02500 * 13 11 10 15 15 C 1.46242 * 114.27972 * 270.59920 * 14 13 11 16 16 N 1.50166 * 107.53288 * 58.40607 * 15 14 13 17 17 C 1.36945 * 120.53836 * 109.56759 * 16 15 14 18 18 H 1.07997 * 119.99875 * 156.71168 * 17 16 15 19 19 C 1.38809 * 119.99797 * 336.70570 * 17 16 15 20 20 N 1.31618 * 120.00252 * 340.40857 * 19 17 16 21 21 Si 1.86797 * 120.00040 * 160.40107 * 19 17 16 22 22 H 1.48495 * 109.47188 * 90.00036 * 21 19 17 23 23 H 1.48491 * 109.47374 * 210.00669 * 21 19 17 24 24 H 1.48510 * 109.46787 * 330.00449 * 21 19 17 25 25 C 1.43432 * 118.92730 * 289.58933 * 16 15 14 26 26 C 1.54837 * 109.20672 * 276.32439 * 11 10 8 27 27 C 1.34654 * 124.84888 * 90.00071 * 3 2 1 28 28 C 1.50703 * 125.80596 * 359.97438 * 27 3 2 29 29 H 1.09007 * 109.47267 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.47380 * 299.99877 * 1 2 3 31 31 H 1.09004 * 109.47069 * 60.00252 * 1 2 3 32 32 H 1.09002 * 109.47018 * 239.99873 * 2 1 3 33 33 H 1.08992 * 109.46959 * 120.00216 * 2 1 3 34 34 H 1.08998 * 109.47598 * 270.27915 * 5 4 3 35 35 H 1.09007 * 109.46608 * 30.28129 * 5 4 3 36 36 H 1.09004 * 109.47482 * 150.27351 * 5 4 3 37 37 H 1.07994 * 126.83374 * 179.72322 * 6 4 3 38 38 H 0.97003 * 120.00122 * 359.97438 * 10 8 7 39 39 H 1.08997 * 110.25706 * 337.00216 * 13 11 10 40 40 H 1.09005 * 110.24819 * 99.05340 * 13 11 10 41 41 H 1.08994 * 108.52586 * 31.84228 * 14 13 11 42 42 H 1.08998 * 108.52229 * 149.51645 * 14 13 11 43 43 H 1.08998 * 109.84777 * 177.91401 * 15 14 13 44 44 H 1.09005 * 109.84615 * 298.83642 * 15 14 13 45 45 H 0.97001 * 120.00489 * 179.97438 * 20 19 17 46 46 H 1.08993 * 108.16357 * 213.28553 * 25 16 15 47 47 H 1.09005 * 108.15840 * 330.06576 * 25 16 15 48 48 H 1.09001 * 109.36163 * 320.98964 * 26 11 10 49 49 H 1.08993 * 109.35834 * 80.58158 * 26 11 10 50 50 H 1.08998 * 109.47286 * 269.71909 * 28 27 3 51 51 H 1.08995 * 109.47066 * 149.71689 * 28 27 3 52 52 H 1.09003 * 109.46377 * 29.71539 * 28 27 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2746 2.1177 -1.1197 5 6 2.1012 1.6434 -2.5396 6 6 2.7124 3.3341 -0.7492 7 6 2.7177 3.3413 0.7177 8 6 3.1184 4.4535 1.5958 9 8 3.0736 4.3211 2.8040 10 7 3.5358 5.6179 1.0607 11 6 3.9350 6.7242 1.9342 12 1 4.4296 6.3223 2.8185 13 6 4.8908 7.6161 1.1962 14 6 5.9221 8.0509 2.2324 15 6 5.5702 9.2725 2.9552 16 7 4.2526 9.0326 3.6345 17 6 4.1843 8.9089 4.9966 18 1 3.2568 9.1116 5.5114 19 6 5.3072 8.5228 5.7156 20 7 6.3015 7.9130 5.1059 21 14 5.4072 8.8691 7.5484 22 1 4.8374 7.7225 8.3006 23 1 6.8269 9.0610 7.9392 24 1 4.6367 10.0992 7.8626 25 6 3.0668 8.9347 2.8335 26 6 2.6739 7.5099 2.3699 27 6 2.2747 2.1067 1.1051 28 6 2.1078 1.6362 2.5270 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5138 0.8899 34 1 3.0266 1.1818 -2.8841 35 1 1.2929 0.9133 -2.5826 36 1 1.8585 2.4921 -3.1791 37 1 3.0025 4.1442 -1.4017 38 1 3.5726 5.7233 0.0971 39 1 5.3752 7.0652 0.3900 40 1 4.3659 8.4849 0.7989 41 1 6.0477 7.2449 2.9553 42 1 6.8741 8.2124 1.7268 43 1 6.3349 9.4956 3.6993 44 1 5.4811 10.1037 2.2557 45 1 7.0863 7.6435 5.6082 46 1 2.2356 9.3472 3.4052 47 1 3.2048 9.5517 1.9455 48 1 1.9840 7.5809 1.5290 49 1 2.1866 6.9843 3.1910 50 1 1.1005 1.8701 2.8713 51 1 2.8354 2.1392 3.1639 52 1 2.2670 0.5589 2.5741 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001052538918.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:06:25 Heat of formation + Delta-G solvation = 8.733131 kcal Electronic energy + Delta-G solvation = -29896.582716 eV Core-core repulsion = 26089.485347 eV Total energy + Delta-G solvation = -3807.097370 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 333.216 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -42.45682 -40.62467 -39.07327 -36.17185 -35.02849 -33.92450 -33.56764 -33.29819 -31.74342 -30.23540 -29.87914 -27.95249 -26.12203 -25.63066 -24.88714 -24.14704 -22.65239 -21.84109 -20.85449 -20.72266 -19.48796 -18.55464 -17.91914 -17.04628 -16.86584 -16.67228 -16.36580 -15.99147 -15.71509 -15.51733 -15.30543 -14.94368 -14.74914 -14.33539 -14.12138 -14.05442 -13.99588 -13.88196 -13.71935 -13.50126 -13.40774 -13.21558 -13.17453 -13.10587 -12.86490 -12.67012 -12.49599 -12.35426 -12.26198 -12.11725 -12.07136 -11.89968 -11.71786 -11.52877 -11.18366 -11.10207 -10.69263 -10.42697 -9.91167 -9.48147 -8.90984 -8.61361 -7.80668 -5.20664 0.78742 1.45535 1.46801 1.47073 1.56246 1.84362 2.54988 2.57583 2.65535 3.32045 3.64832 3.76721 3.78633 3.89590 4.06555 4.09023 4.10505 4.17006 4.31641 4.37156 4.40689 4.49612 4.51778 4.62677 4.65447 4.67425 4.76297 4.78063 4.83953 4.84765 4.90271 4.91105 4.96877 5.04587 5.09576 5.14011 5.20398 5.24867 5.29777 5.31500 5.37895 5.50771 5.53704 5.68709 5.76244 5.83491 5.87113 6.16533 6.21910 6.40812 6.44894 6.84931 7.21426 7.53648 7.95072 8.43063 9.23556 Molecular weight = 333.22amu Principal moments of inertia in cm(-1) A = 0.018052 B = 0.002860 C = 0.002632 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1550.726863 B = 9787.808119 C =10634.407671 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.085 3.915 3 N -0.432 5.432 4 C 0.017 3.983 5 C -0.079 4.079 6 C -0.183 4.183 7 C -0.263 4.263 8 C 0.574 3.426 9 O -0.599 6.599 10 N -0.712 5.712 11 C 0.172 3.828 12 H 0.037 0.963 13 C -0.105 4.105 14 C -0.123 4.123 15 C 0.168 3.832 16 N -0.602 5.602 17 C -0.261 4.261 18 H 0.057 0.943 19 C -0.045 4.045 20 N -0.916 5.916 21 Si 0.957 3.043 22 H -0.295 1.295 23 H -0.289 1.289 24 H -0.273 1.273 25 C 0.157 3.843 26 C -0.139 4.139 27 C 0.091 3.909 28 C -0.087 4.087 29 H 0.099 0.901 30 H 0.046 0.954 31 H 0.062 0.938 32 H 0.116 0.884 33 H 0.099 0.901 34 H 0.083 0.917 35 H 0.079 0.921 36 H 0.092 0.908 37 H 0.160 0.840 38 H 0.408 0.592 39 H 0.082 0.918 40 H 0.084 0.916 41 H 0.057 0.943 42 H 0.046 0.954 43 H 0.056 0.944 44 H 0.034 0.966 45 H 0.245 0.755 46 H 0.027 0.973 47 H 0.060 0.940 48 H 0.075 0.925 49 H 0.014 0.986 50 H 0.074 0.926 51 H 0.065 0.935 52 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.496 -16.042 -20.549 27.745 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.035 4.035 3 N -0.109 5.109 4 C -0.092 4.092 5 C -0.136 4.136 6 C -0.206 4.206 7 C -0.273 4.273 8 C 0.365 3.635 9 O -0.481 6.481 10 N -0.362 5.362 11 C 0.067 3.933 12 H 0.055 0.945 13 C -0.143 4.143 14 C -0.162 4.162 15 C 0.045 3.955 16 N -0.324 5.324 17 C -0.392 4.392 18 H 0.075 0.925 19 C -0.241 4.241 20 N -0.561 5.561 21 Si 0.786 3.214 22 H -0.223 1.223 23 H -0.215 1.215 24 H -0.198 1.198 25 C 0.029 3.971 26 C -0.181 4.181 27 C -0.027 4.027 28 C -0.145 4.145 29 H 0.117 0.883 30 H 0.065 0.935 31 H 0.081 0.919 32 H 0.134 0.866 33 H 0.117 0.883 34 H 0.101 0.899 35 H 0.098 0.902 36 H 0.110 0.890 37 H 0.177 0.823 38 H 0.245 0.755 39 H 0.100 0.900 40 H 0.102 0.898 41 H 0.076 0.924 42 H 0.064 0.936 43 H 0.075 0.925 44 H 0.052 0.948 45 H 0.055 0.945 46 H 0.045 0.955 47 H 0.078 0.922 48 H 0.094 0.906 49 H 0.033 0.967 50 H 0.093 0.907 51 H 0.084 0.916 52 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -9.482 -16.480 -19.670 27.357 hybrid contribution 0.300 0.180 1.425 1.467 sum -9.182 -16.300 -18.245 26.132 Atomic orbital electron populations 1.22139 0.93433 1.04262 1.02437 1.22222 0.96295 0.78840 1.06121 1.43878 1.50015 1.12823 1.04168 1.20777 1.06293 0.91965 0.90118 1.20439 1.03278 1.02904 0.86984 1.21991 1.08395 0.98586 0.91630 1.20201 1.17532 0.95003 0.94537 1.17985 0.75910 0.82716 0.86912 1.90741 1.57058 1.83258 1.17090 1.46029 1.66987 1.12803 1.10395 1.20738 0.94740 0.85702 0.92094 0.94456 1.21255 0.96451 0.99203 0.97365 1.20747 0.96961 1.01369 0.97131 1.20125 0.87395 0.94100 0.93922 1.44449 1.03593 1.82129 1.02220 1.19368 0.97182 1.38950 0.83678 0.92511 1.25545 0.98529 0.98920 1.01134 1.70151 1.08721 1.41528 1.35737 0.85447 0.76537 0.77749 0.81699 1.22307 1.21517 1.19768 1.20486 0.89182 0.93048 0.94412 1.23162 0.96891 0.98976 0.99055 1.20344 1.01027 0.91266 0.90096 1.20447 1.03155 1.01795 0.89066 0.88252 0.93465 0.91918 0.86559 0.88320 0.89878 0.90190 0.88967 0.82254 0.75500 0.89979 0.89777 0.92423 0.93579 0.92518 0.94767 0.94541 0.95501 0.92190 0.90602 0.96692 0.90693 0.91588 0.89163 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.52 10.24 71.98 0.74 -0.78 16 2 C 0.09 0.91 6.09 86.38 0.53 1.44 16 3 N -0.43 -8.50 2.68 -495.49 -1.33 -9.83 16 4 C 0.02 0.31 6.85 40.98 0.28 0.60 16 5 C -0.08 -0.73 9.80 71.24 0.70 -0.04 16 6 C -0.18 -4.32 10.45 23.62 0.25 -4.07 16 7 C -0.26 -8.43 6.29 -19.04 -0.12 -8.55 16 8 C 0.57 23.18 7.76 86.62 0.67 23.85 16 9 O -0.60 -30.17 14.48 -4.11 -0.06 -30.23 16 10 N -0.71 -25.34 4.97 -447.37 -2.22 -27.56 16 11 C 0.17 7.21 2.22 44.69 0.10 7.31 16 12 H 0.04 2.08 6.26 -2.39 -0.01 2.07 16 13 C -0.10 -3.76 5.34 29.51 0.16 -3.60 16 14 C -0.12 -5.43 5.02 28.36 0.14 -5.28 16 15 C 0.17 7.99 5.24 83.58 0.44 8.43 16 16 N -0.60 -31.02 2.60 -707.82 -1.84 -32.87 16 17 C -0.26 -15.19 9.63 84.03 0.81 -14.39 16 18 H 0.06 3.33 7.89 -2.91 -0.02 3.30 16 19 C -0.05 -2.65 4.91 84.86 0.42 -2.24 16 20 N -0.92 -54.93 9.43 21.65 0.20 -54.72 16 21 Si 0.96 47.65 29.60 68.60 2.03 49.68 16 22 H -0.30 -14.95 7.11 99.48 0.71 -14.24 16 23 H -0.29 -14.18 7.11 99.48 0.71 -13.47 16 24 H -0.27 -13.05 7.11 99.48 0.71 -12.34 16 25 C 0.16 6.86 5.18 87.60 0.45 7.32 16 26 C -0.14 -5.87 5.98 31.87 0.19 -5.68 16 27 C 0.09 2.53 6.89 41.78 0.29 2.81 16 28 C -0.09 -2.34 9.52 71.24 0.68 -1.67 16 29 H 0.10 0.44 8.14 -2.38 -0.02 0.42 16 30 H 0.05 0.62 8.14 -2.39 -0.02 0.60 16 31 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 32 H 0.12 0.68 7.53 -2.39 -0.02 0.66 16 33 H 0.10 0.93 6.87 -2.39 -0.02 0.91 16 34 H 0.08 0.62 8.14 -2.39 -0.02 0.60 16 35 H 0.08 0.49 7.62 -2.38 -0.02 0.47 16 36 H 0.09 0.69 8.14 -2.39 -0.02 0.67 16 37 H 0.16 2.98 7.69 -2.91 -0.02 2.95 16 38 H 0.41 11.16 7.60 -92.71 -0.70 10.45 16 39 H 0.08 2.47 7.85 -2.39 -0.02 2.45 16 40 H 0.08 2.68 6.28 -2.38 -0.01 2.67 16 41 H 0.06 3.14 5.29 -2.39 -0.01 3.13 16 42 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 43 H 0.06 3.07 6.05 -2.39 -0.01 3.06 16 44 H 0.03 1.43 8.13 -2.38 -0.02 1.41 16 45 H 0.25 14.45 8.31 -92.71 -0.77 13.68 16 46 H 0.03 1.19 7.99 -2.39 -0.02 1.17 16 47 H 0.06 2.23 6.88 -2.38 -0.02 2.22 16 48 H 0.08 2.69 8.13 -2.39 -0.02 2.67 16 49 H 0.01 0.72 8.14 -2.39 -0.02 0.70 16 50 H 0.07 1.95 8.14 -2.39 -0.02 1.93 16 51 H 0.07 2.30 6.46 -2.39 -0.02 2.29 16 52 H 0.09 1.72 6.91 -2.39 -0.02 1.71 16 Total: -1.00 -79.26 397.36 3.70 -75.56 By element: Atomic # 1 Polarization: 24.29 SS G_CDS: 0.21 Total: 24.50 kcal Atomic # 6 Polarization: -1.25 SS G_CDS: 6.71 Total: 5.47 kcal Atomic # 7 Polarization: -119.79 SS G_CDS: -5.19 Total: -124.98 kcal Atomic # 8 Polarization: -30.17 SS G_CDS: -0.06 Total: -30.23 kcal Atomic # 14 Polarization: 47.65 SS G_CDS: 2.03 Total: 49.68 kcal Total: -79.26 3.70 -75.56 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001052538918.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.291 kcal (2) G-P(sol) polarization free energy of solvation -79.261 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.030 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.703 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.557 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.733 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds