Wall clock time and date at job start Tue Mar 31 2020 18:06:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46495 * 109.47620 * 2 1 4 4 C 1.36445 * 124.84907 * 269.98382 * 3 2 1 5 5 C 1.50696 * 125.57616 * 0.02562 * 4 3 2 6 6 C 1.34486 * 108.85675 * 179.72975 * 4 3 2 7 7 C 1.46692 * 106.33148 * 0.43114 * 6 4 3 8 8 C 1.47258 * 126.94317 * 179.83123 * 7 6 4 9 9 O 1.21631 * 119.99854 * 179.68825 * 8 7 6 10 10 N 1.34774 * 120.00239 * 359.68391 * 8 7 6 11 11 C 1.46496 * 119.99930 * 179.97438 * 10 8 7 12 12 H 1.08999 * 109.53208 * 325.08246 * 11 10 8 13 13 C 1.53048 * 109.49890 * 205.00206 * 11 10 8 14 14 C 1.53042 * 109.53607 * 301.41789 * 13 11 10 15 15 C 1.53195 * 109.30982 * 298.63286 * 14 13 11 16 16 H 1.08998 * 109.58795 * 294.84332 * 15 14 13 17 17 C 1.53007 * 109.70424 * 174.49262 * 15 14 13 18 18 N 1.46921 * 108.78058 * 54.63786 * 15 14 13 19 19 C 1.36928 * 120.63410 * 126.36678 * 18 15 14 20 20 H 1.08006 * 120.00221 * 330.19323 * 19 18 15 21 21 C 1.38816 * 120.00095 * 150.19630 * 19 18 15 22 22 N 1.31621 * 119.99800 * 344.48785 * 21 19 18 23 23 Si 1.86803 * 120.00007 * 164.49010 * 21 19 18 24 24 H 1.48500 * 109.47230 * 359.97438 * 23 21 19 25 25 H 1.48501 * 109.46910 * 119.99808 * 23 21 19 26 26 H 1.48498 * 109.46945 * 239.99543 * 23 21 19 27 27 C 1.46924 * 118.73501 * 306.39092 * 18 15 14 28 28 C 1.34651 * 124.85164 * 90.00025 * 3 2 1 29 29 C 1.50697 * 125.80080 * 359.95979 * 28 3 2 30 30 H 1.08991 * 109.47518 * 180.02562 * 1 2 3 31 31 H 1.09007 * 109.46763 * 300.00099 * 1 2 3 32 32 H 1.08994 * 109.47224 * 59.99504 * 1 2 3 33 33 H 1.09007 * 109.46763 * 239.99901 * 2 1 3 34 34 H 1.09003 * 109.47037 * 120.00724 * 2 1 3 35 35 H 1.08997 * 109.47215 * 90.00335 * 5 4 3 36 36 H 1.09002 * 109.47514 * 210.00582 * 5 4 3 37 37 H 1.09001 * 109.47100 * 330.00447 * 5 4 3 38 38 H 1.07997 * 126.83990 * 180.26036 * 6 4 3 39 39 H 0.96995 * 119.99810 * 0.02562 * 10 8 7 40 40 H 1.08996 * 109.45769 * 61.43528 * 13 11 10 41 41 H 1.09004 * 109.46244 * 181.39667 * 13 11 10 42 42 H 1.08994 * 109.49895 * 58.57960 * 14 13 11 43 43 H 1.08999 * 109.49963 * 178.68018 * 14 13 11 44 44 H 1.08998 * 109.46669 * 300.64374 * 17 15 14 45 45 H 1.09005 * 109.46541 * 60.63899 * 17 15 14 46 46 H 1.08996 * 109.47406 * 180.63381 * 17 15 14 47 47 H 0.96999 * 119.99400 * 180.02562 * 22 21 19 48 48 H 1.08994 * 109.59138 * 293.81979 * 27 18 15 49 49 H 1.09006 * 109.70783 * 173.45995 * 27 18 15 50 50 H 1.08996 * 109.47314 * 269.99620 * 29 28 3 51 51 H 1.08997 * 109.47565 * 29.99928 * 29 28 3 52 52 H 1.09006 * 109.47432 * 150.00063 * 29 28 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0185 1.3811 0.0000 4 6 2.2787 2.1161 -1.1198 5 6 2.1102 1.6401 -2.5396 6 6 2.7040 3.3369 -0.7492 7 6 2.7127 3.3431 0.7176 8 6 3.1071 4.4576 1.5957 9 8 3.0602 4.3258 2.8039 10 7 3.5199 5.6236 1.0605 11 6 3.9116 6.7324 1.9341 12 1 3.2868 6.7310 2.8272 13 6 3.7340 8.0573 1.1887 14 6 4.5858 8.0474 -0.0827 15 6 6.0625 7.9009 0.2979 16 1 6.3860 8.7818 0.8525 17 6 6.9092 7.7522 -0.9678 18 7 6.2181 6.7055 1.1378 19 6 7.1260 5.7348 0.8084 20 1 7.3781 5.5601 -0.2272 21 6 7.7224 4.9751 1.8055 22 7 7.6622 5.3711 3.0593 23 14 8.6103 3.3909 1.3678 24 1 8.5347 3.1701 -0.0987 25 1 10.0331 3.4906 1.7812 26 1 7.9684 2.2527 2.0731 27 6 5.3807 6.5712 2.3375 28 6 2.2750 2.1066 1.1050 29 6 2.1078 1.6362 2.5269 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 -0.3633 0.5139 -0.8899 33 1 1.8933 -0.5139 -0.8900 34 1 1.8934 -0.5140 0.8899 35 1 1.1009 1.8684 -2.8820 36 1 2.8339 2.1442 -3.1802 37 1 2.2740 0.5634 -2.5837 38 1 2.9859 4.1500 -1.4017 39 1 3.5570 5.7288 0.0970 40 1 2.6851 8.1861 0.9221 41 1 4.0491 8.8801 1.8305 42 1 4.2880 7.2100 -0.7136 43 1 4.4408 8.9817 -0.6251 44 1 6.5808 6.8739 -1.5234 45 1 6.7924 8.6400 -1.5893 46 1 7.9575 7.6370 -0.6923 47 1 8.0793 4.8404 3.7559 48 1 5.6485 7.3435 3.0585 49 1 5.5314 5.5877 2.7827 50 1 1.0988 1.8660 2.8693 51 1 2.2714 0.5596 2.5751 52 1 2.8321 2.1427 3.1648 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001071663413.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:06:18 Heat of formation + Delta-G solvation = 19.561792 kcal Electronic energy + Delta-G solvation = -30797.830536 eV Core-core repulsion = 26991.202733 eV Total energy + Delta-G solvation = -3806.627804 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 333.216 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -41.31441 -38.98361 -37.22797 -34.11758 -33.91202 -32.64221 -32.44761 -30.68655 -29.79275 -29.24084 -28.84017 -26.16021 -25.00747 -24.49904 -23.69242 -22.05846 -21.70389 -20.42771 -19.79828 -18.60193 -18.35289 -16.79901 -16.10620 -15.86181 -15.29324 -15.12197 -14.74126 -14.61242 -14.00733 -13.73716 -13.66677 -13.47422 -13.34109 -13.20081 -13.09677 -13.03496 -12.81747 -12.60771 -12.43124 -12.37264 -12.23233 -12.04306 -11.74463 -11.57261 -11.46583 -11.16398 -11.07821 -11.06200 -10.84270 -10.74616 -10.62324 -10.27281 -10.20883 -9.85295 -9.39727 -9.32793 -9.02054 -8.39523 -8.32964 -8.08117 -7.70676 -6.46277 -5.63275 -3.06879 2.15244 2.61874 2.86172 3.45453 3.53057 3.54143 4.11260 4.31296 4.46850 4.60723 4.69125 4.76118 4.91733 5.00190 5.21486 5.30585 5.33776 5.41726 5.43323 5.47340 5.48160 5.54791 5.63525 5.67253 5.72537 5.73419 5.78601 5.84406 5.89342 6.12683 6.14056 6.22020 6.24825 6.28759 6.43527 6.45113 6.50540 6.56337 6.67692 6.73833 6.85932 7.05213 7.08226 7.16013 7.27379 7.31809 7.44143 7.60607 7.84562 7.96153 8.47160 8.61768 9.17900 9.35866 10.00636 10.57046 11.44709 Molecular weight = 333.22amu Principal moments of inertia in cm(-1) A = 0.011076 B = 0.004377 C = 0.003962 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2527.410367 B = 6396.150127 C = 7066.038195 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.095 3.905 3 N -0.440 5.440 4 C 0.002 3.998 5 C -0.079 4.079 6 C -0.160 4.160 7 C -0.218 4.218 8 C 0.590 3.410 9 O -0.560 6.560 10 N -0.696 5.696 11 C 0.120 3.880 12 H 0.073 0.927 13 C -0.118 4.118 14 C -0.130 4.130 15 C 0.166 3.834 16 H 0.023 0.977 17 C -0.135 4.135 18 N -0.582 5.582 19 C -0.245 4.245 20 H 0.066 0.934 21 C 0.007 3.993 22 N -0.899 5.899 23 Si 0.893 3.107 24 H -0.279 1.279 25 H -0.292 1.292 26 H -0.291 1.291 27 C 0.164 3.836 28 C 0.097 3.903 29 C -0.090 4.090 30 H 0.072 0.928 31 H 0.063 0.937 32 H 0.062 0.938 33 H 0.088 0.912 34 H 0.089 0.911 35 H 0.067 0.933 36 H 0.079 0.921 37 H 0.059 0.941 38 H 0.141 0.859 39 H 0.393 0.607 40 H 0.050 0.950 41 H 0.068 0.932 42 H 0.055 0.945 43 H 0.051 0.949 44 H 0.051 0.949 45 H 0.036 0.964 46 H 0.060 0.940 47 H 0.251 0.749 48 H 0.022 0.978 49 H 0.095 0.905 50 H 0.071 0.929 51 H 0.056 0.944 52 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.914 -6.547 -9.456 18.833 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C -0.027 4.027 3 N -0.118 5.118 4 C -0.105 4.105 5 C -0.137 4.137 6 C -0.184 4.184 7 C -0.227 4.227 8 C 0.378 3.622 9 O -0.441 6.441 10 N -0.345 5.345 11 C 0.014 3.986 12 H 0.091 0.909 13 C -0.156 4.156 14 C -0.169 4.169 15 C 0.059 3.941 16 H 0.041 0.959 17 C -0.193 4.193 18 N -0.305 5.305 19 C -0.374 4.374 20 H 0.084 0.916 21 C -0.192 4.192 22 N -0.543 5.543 23 Si 0.724 3.276 24 H -0.204 1.204 25 H -0.219 1.219 26 H -0.218 1.218 27 C 0.037 3.963 28 C -0.019 4.019 29 C -0.147 4.147 30 H 0.091 0.909 31 H 0.082 0.918 32 H 0.081 0.919 33 H 0.107 0.893 34 H 0.108 0.892 35 H 0.085 0.915 36 H 0.098 0.902 37 H 0.078 0.922 38 H 0.159 0.841 39 H 0.228 0.772 40 H 0.069 0.931 41 H 0.087 0.913 42 H 0.073 0.927 43 H 0.070 0.930 44 H 0.070 0.930 45 H 0.055 0.945 46 H 0.079 0.921 47 H 0.061 0.939 48 H 0.040 0.960 49 H 0.113 0.887 50 H 0.090 0.910 51 H 0.075 0.925 52 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -14.958 -7.022 -8.492 18.578 hybrid contribution 0.612 -0.848 -0.674 1.244 sum -14.346 -7.870 -9.165 18.754 Atomic orbital electron populations 1.22141 0.94414 1.02716 1.03265 1.21805 0.95466 0.81184 1.04254 1.43526 1.51553 1.11603 1.05138 1.20073 1.09293 0.92686 0.88435 1.20272 1.02453 1.00907 0.90035 1.21755 1.06620 0.96666 0.93404 1.20242 1.14197 0.95166 0.93121 1.17202 0.76399 0.81683 0.86902 1.90685 1.56613 1.82102 1.14697 1.45581 1.66083 1.12922 1.09910 1.21706 0.99898 0.84439 0.92532 0.90852 1.21685 0.98696 0.97389 0.97852 1.22058 0.98256 0.99986 0.96621 1.20446 0.91295 0.90591 0.91746 0.95921 1.21791 1.01135 0.99421 0.96907 1.44019 1.41702 1.18183 1.26579 1.19083 1.16576 1.10026 0.91757 0.91606 1.25021 0.98461 0.99869 0.95816 1.70005 1.47186 1.37636 0.99504 0.86361 0.78991 0.84535 0.77727 1.20419 1.21938 1.21768 1.21154 0.84311 1.02665 0.88169 1.20202 1.01582 0.91168 0.88904 1.20524 1.03955 1.00242 0.89978 0.90919 0.91759 0.91892 0.89340 0.89246 0.91470 0.90203 0.92170 0.84112 0.77187 0.93149 0.91316 0.92667 0.93046 0.92987 0.94535 0.92088 0.93884 0.95982 0.88692 0.91009 0.92512 0.87826 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.23 10.24 37.16 0.38 -0.85 16 2 C 0.09 0.84 6.30 -4.04 -0.03 0.82 16 3 N -0.44 -5.79 2.68 -107.97 -0.29 -6.08 16 4 C 0.00 0.03 6.85 -81.87 -0.56 -0.53 16 5 C -0.08 -0.73 10.06 36.00 0.36 -0.37 16 6 C -0.16 -2.51 10.45 -37.50 -0.39 -2.90 16 7 C -0.22 -4.01 6.29 -103.35 -0.65 -4.66 16 8 C 0.59 12.48 7.78 -12.60 -0.10 12.38 16 9 O -0.56 -13.34 14.48 5.25 0.08 -13.27 16 10 N -0.70 -13.73 4.91 -54.81 -0.27 -14.00 16 11 C 0.12 2.45 2.81 -67.81 -0.19 2.26 16 12 H 0.07 1.54 7.58 -51.93 -0.39 1.14 16 13 C -0.12 -1.99 5.59 -26.68 -0.15 -2.13 16 14 C -0.13 -2.18 5.21 -26.61 -0.14 -2.32 16 15 C 0.17 3.39 3.49 -67.60 -0.24 3.16 16 16 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 17 C -0.14 -2.53 7.96 37.16 0.30 -2.23 16 18 N -0.58 -14.34 2.90 -164.77 -0.48 -14.81 16 19 C -0.24 -6.67 8.57 -15.06 -0.13 -6.80 16 20 H 0.07 1.77 6.24 -52.48 -0.33 1.44 16 21 C 0.01 0.20 4.94 -17.43 -0.09 0.12 16 22 N -0.90 -27.17 11.23 55.49 0.62 -26.54 16 23 Si 0.89 22.83 29.58 -169.99 -5.03 17.80 16 24 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 25 H -0.29 -7.46 7.11 56.52 0.40 -7.06 16 26 H -0.29 -7.63 7.11 56.52 0.40 -7.23 16 27 C 0.16 4.07 4.88 -3.71 -0.02 4.05 16 28 C 0.10 1.57 6.89 -81.89 -0.56 1.00 16 29 C -0.09 -1.30 9.52 36.00 0.34 -0.96 16 30 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 31 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 33 H 0.09 0.65 6.90 -51.93 -0.36 0.29 16 34 H 0.09 0.74 6.88 -51.93 -0.36 0.38 16 35 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 36 H 0.08 0.70 8.14 -51.93 -0.42 0.27 16 37 H 0.06 0.47 6.94 -51.93 -0.36 0.11 16 38 H 0.14 1.99 7.69 -52.49 -0.40 1.58 16 39 H 0.39 7.13 5.89 -40.82 -0.24 6.89 16 40 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 41 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 42 H 0.05 0.92 6.40 -51.93 -0.33 0.59 16 43 H 0.05 0.75 8.14 -51.93 -0.42 0.32 16 44 H 0.05 0.98 7.43 -51.93 -0.39 0.59 16 45 H 0.04 0.57 8.14 -51.93 -0.42 0.14 16 46 H 0.06 1.25 7.63 -51.93 -0.40 0.85 16 47 H 0.25 7.43 8.31 -40.82 -0.34 7.09 16 48 H 0.02 0.58 8.14 -51.93 -0.42 0.16 16 49 H 0.09 2.79 6.15 -51.93 -0.32 2.47 16 50 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 51 H 0.06 0.66 6.92 -51.93 -0.36 0.30 16 52 H 0.10 1.84 6.47 -51.93 -0.34 1.50 16 LS Contribution 400.06 15.07 6.03 6.03 Total: -1.00 -33.71 400.06 -9.97 -43.68 By element: Atomic # 1 Polarization: 15.94 SS G_CDS: -8.78 Total: 7.16 kcal Atomic # 6 Polarization: 1.89 SS G_CDS: -1.86 Total: 0.03 kcal Atomic # 7 Polarization: -61.02 SS G_CDS: -0.41 Total: -61.44 kcal Atomic # 8 Polarization: -13.34 SS G_CDS: 0.08 Total: -13.27 kcal Atomic # 14 Polarization: 22.83 SS G_CDS: -5.03 Total: 17.80 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -33.71 -9.97 -43.68 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071663413.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.243 kcal (2) G-P(sol) polarization free energy of solvation -33.708 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.535 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.973 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.682 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.562 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds