Wall clock time and date at job start Tue Mar 31 2020 18:06:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46495 * 109.47620 * 2 1 4 4 C 1.36445 * 124.84907 * 269.98382 * 3 2 1 5 5 C 1.50696 * 125.57616 * 0.02562 * 4 3 2 6 6 C 1.34486 * 108.85675 * 179.72975 * 4 3 2 7 7 C 1.46692 * 106.33148 * 0.43114 * 6 4 3 8 8 C 1.47258 * 126.94317 * 179.83123 * 7 6 4 9 9 O 1.21631 * 119.99854 * 179.68825 * 8 7 6 10 10 N 1.34774 * 120.00239 * 359.68391 * 8 7 6 11 11 C 1.46496 * 119.99930 * 179.97438 * 10 8 7 12 12 H 1.08999 * 109.53208 * 325.08246 * 11 10 8 13 13 C 1.53048 * 109.49890 * 205.00206 * 11 10 8 14 14 C 1.53042 * 109.53607 * 301.41789 * 13 11 10 15 15 C 1.53195 * 109.30982 * 298.63286 * 14 13 11 16 16 H 1.08998 * 109.58795 * 294.84332 * 15 14 13 17 17 C 1.53007 * 109.70424 * 174.49262 * 15 14 13 18 18 N 1.46921 * 108.78058 * 54.63786 * 15 14 13 19 19 C 1.36928 * 120.63410 * 126.36678 * 18 15 14 20 20 H 1.08006 * 120.00221 * 330.19323 * 19 18 15 21 21 C 1.38816 * 120.00095 * 150.19630 * 19 18 15 22 22 N 1.31621 * 119.99800 * 344.48785 * 21 19 18 23 23 Si 1.86803 * 120.00007 * 164.49010 * 21 19 18 24 24 H 1.48500 * 109.47230 * 359.97438 * 23 21 19 25 25 H 1.48501 * 109.46910 * 119.99808 * 23 21 19 26 26 H 1.48498 * 109.46945 * 239.99543 * 23 21 19 27 27 C 1.46924 * 118.73501 * 306.39092 * 18 15 14 28 28 C 1.34651 * 124.85164 * 90.00025 * 3 2 1 29 29 C 1.50697 * 125.80080 * 359.95979 * 28 3 2 30 30 H 1.08991 * 109.47518 * 180.02562 * 1 2 3 31 31 H 1.09007 * 109.46763 * 300.00099 * 1 2 3 32 32 H 1.08994 * 109.47224 * 59.99504 * 1 2 3 33 33 H 1.09007 * 109.46763 * 239.99901 * 2 1 3 34 34 H 1.09003 * 109.47037 * 120.00724 * 2 1 3 35 35 H 1.08997 * 109.47215 * 90.00335 * 5 4 3 36 36 H 1.09002 * 109.47514 * 210.00582 * 5 4 3 37 37 H 1.09001 * 109.47100 * 330.00447 * 5 4 3 38 38 H 1.07997 * 126.83990 * 180.26036 * 6 4 3 39 39 H 0.96995 * 119.99810 * 0.02562 * 10 8 7 40 40 H 1.08996 * 109.45769 * 61.43528 * 13 11 10 41 41 H 1.09004 * 109.46244 * 181.39667 * 13 11 10 42 42 H 1.08994 * 109.49895 * 58.57960 * 14 13 11 43 43 H 1.08999 * 109.49963 * 178.68018 * 14 13 11 44 44 H 1.08998 * 109.46669 * 300.64374 * 17 15 14 45 45 H 1.09005 * 109.46541 * 60.63899 * 17 15 14 46 46 H 1.08996 * 109.47406 * 180.63381 * 17 15 14 47 47 H 0.96999 * 119.99400 * 180.02562 * 22 21 19 48 48 H 1.08994 * 109.59138 * 293.81979 * 27 18 15 49 49 H 1.09006 * 109.70783 * 173.45995 * 27 18 15 50 50 H 1.08996 * 109.47314 * 269.99620 * 29 28 3 51 51 H 1.08997 * 109.47565 * 29.99928 * 29 28 3 52 52 H 1.09006 * 109.47432 * 150.00063 * 29 28 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0185 1.3811 0.0000 4 6 2.2787 2.1161 -1.1198 5 6 2.1102 1.6401 -2.5396 6 6 2.7040 3.3369 -0.7492 7 6 2.7127 3.3431 0.7176 8 6 3.1071 4.4576 1.5957 9 8 3.0602 4.3258 2.8039 10 7 3.5199 5.6236 1.0605 11 6 3.9116 6.7324 1.9341 12 1 3.2868 6.7310 2.8272 13 6 3.7340 8.0573 1.1887 14 6 4.5858 8.0474 -0.0827 15 6 6.0625 7.9009 0.2979 16 1 6.3860 8.7818 0.8525 17 6 6.9092 7.7522 -0.9678 18 7 6.2181 6.7055 1.1378 19 6 7.1260 5.7348 0.8084 20 1 7.3781 5.5601 -0.2272 21 6 7.7224 4.9751 1.8055 22 7 7.6622 5.3711 3.0593 23 14 8.6103 3.3909 1.3678 24 1 8.5347 3.1701 -0.0987 25 1 10.0331 3.4906 1.7812 26 1 7.9684 2.2527 2.0731 27 6 5.3807 6.5712 2.3375 28 6 2.2750 2.1066 1.1050 29 6 2.1078 1.6362 2.5269 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 -0.3633 0.5139 -0.8899 33 1 1.8933 -0.5139 -0.8900 34 1 1.8934 -0.5140 0.8899 35 1 1.1009 1.8684 -2.8820 36 1 2.8339 2.1442 -3.1802 37 1 2.2740 0.5634 -2.5837 38 1 2.9859 4.1500 -1.4017 39 1 3.5570 5.7288 0.0970 40 1 2.6851 8.1861 0.9221 41 1 4.0491 8.8801 1.8305 42 1 4.2880 7.2100 -0.7136 43 1 4.4408 8.9817 -0.6251 44 1 6.5808 6.8739 -1.5234 45 1 6.7924 8.6400 -1.5893 46 1 7.9575 7.6370 -0.6923 47 1 8.0793 4.8404 3.7559 48 1 5.6485 7.3435 3.0585 49 1 5.5314 5.5877 2.7827 50 1 1.0988 1.8660 2.8693 51 1 2.2714 0.5596 2.5751 52 1 2.8321 2.1427 3.1648 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001071663413.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:06:17 Heat of formation + Delta-G solvation = -0.798156 kcal Electronic energy + Delta-G solvation = -30798.713410 eV Core-core repulsion = 26991.202733 eV Total energy + Delta-G solvation = -3807.510677 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 333.216 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -42.42256 -40.61644 -38.91231 -35.69713 -34.98972 -34.44986 -33.55547 -32.22375 -31.71964 -30.21516 -29.87704 -27.85279 -26.82102 -25.76309 -24.57045 -23.86335 -22.92188 -22.05101 -21.13957 -20.30059 -19.54755 -18.26154 -17.87695 -17.24428 -16.72472 -16.44009 -16.26761 -15.82954 -15.68528 -15.38964 -15.30063 -14.80908 -14.53704 -14.40129 -14.33804 -14.14479 -14.06477 -13.90318 -13.67952 -13.58699 -13.42395 -13.15989 -12.98587 -12.88618 -12.82312 -12.61500 -12.54424 -12.48131 -12.39439 -12.22338 -12.09438 -12.09052 -12.04218 -11.55845 -11.18124 -11.02773 -10.69431 -10.49810 -9.88044 -9.44383 -8.88144 -8.53313 -7.79726 -5.24779 0.84490 1.37331 1.41213 1.48923 1.49323 1.87193 2.50673 2.60001 2.80143 3.36312 3.66468 3.78280 3.79208 3.92539 4.04081 4.11170 4.13102 4.15419 4.20921 4.35252 4.39423 4.49615 4.53173 4.64053 4.65626 4.69566 4.76168 4.78764 4.83189 4.85208 4.86617 4.98322 4.99550 5.05530 5.07329 5.12232 5.13454 5.14422 5.24203 5.28709 5.34137 5.39591 5.59030 5.64494 5.73439 5.77328 5.86438 5.89849 6.18731 6.43822 6.47116 6.91072 7.21234 7.59077 7.95816 8.46918 9.25582 Molecular weight = 333.22amu Principal moments of inertia in cm(-1) A = 0.011076 B = 0.004377 C = 0.003962 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2527.410367 B = 6396.150127 C = 7066.038195 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.084 3.916 3 N -0.433 5.433 4 C 0.016 3.984 5 C -0.077 4.077 6 C -0.185 4.185 7 C -0.262 4.262 8 C 0.578 3.422 9 O -0.602 6.602 10 N -0.688 5.688 11 C 0.129 3.871 12 H 0.060 0.940 13 C -0.110 4.110 14 C -0.118 4.118 15 C 0.154 3.846 16 H 0.014 0.986 17 C -0.127 4.127 18 N -0.594 5.594 19 C -0.231 4.231 20 H 0.074 0.926 21 C -0.054 4.054 22 N -0.937 5.937 23 Si 0.947 3.053 24 H -0.261 1.261 25 H -0.292 1.292 26 H -0.307 1.307 27 C 0.175 3.825 28 C 0.087 3.913 29 C -0.084 4.084 30 H 0.099 0.901 31 H 0.049 0.951 32 H 0.062 0.938 33 H 0.113 0.887 34 H 0.096 0.904 35 H 0.087 0.913 36 H 0.086 0.914 37 H 0.079 0.921 38 H 0.150 0.850 39 H 0.403 0.597 40 H 0.082 0.918 41 H 0.073 0.927 42 H 0.060 0.940 43 H 0.091 0.909 44 H 0.050 0.950 45 H 0.076 0.924 46 H 0.035 0.965 47 H 0.241 0.759 48 H -0.005 1.005 49 H 0.043 0.957 50 H 0.083 0.917 51 H 0.086 0.914 52 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.832 -7.425 -13.517 22.829 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.036 4.036 3 N -0.110 5.110 4 C -0.093 4.093 5 C -0.134 4.134 6 C -0.209 4.209 7 C -0.271 4.271 8 C 0.369 3.631 9 O -0.486 6.486 10 N -0.338 5.338 11 C 0.022 3.978 12 H 0.078 0.922 13 C -0.147 4.147 14 C -0.157 4.157 15 C 0.049 3.951 16 H 0.032 0.968 17 C -0.184 4.184 18 N -0.317 5.317 19 C -0.362 4.362 20 H 0.092 0.908 21 C -0.249 4.249 22 N -0.584 5.584 23 Si 0.777 3.223 24 H -0.185 1.185 25 H -0.219 1.219 26 H -0.235 1.235 27 C 0.048 3.952 28 C -0.030 4.030 29 C -0.141 4.141 30 H 0.118 0.882 31 H 0.068 0.932 32 H 0.081 0.919 33 H 0.131 0.869 34 H 0.115 0.885 35 H 0.105 0.895 36 H 0.105 0.895 37 H 0.098 0.902 38 H 0.168 0.832 39 H 0.239 0.761 40 H 0.101 0.899 41 H 0.091 0.909 42 H 0.079 0.921 43 H 0.110 0.890 44 H 0.069 0.931 45 H 0.095 0.905 46 H 0.054 0.946 47 H 0.050 0.950 48 H 0.013 0.987 49 H 0.061 0.939 50 H 0.101 0.899 51 H 0.104 0.896 52 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -16.892 -7.889 -12.634 22.521 hybrid contribution 1.169 -0.585 0.561 1.423 sum -15.723 -8.475 -12.073 21.559 Atomic orbital electron populations 1.22102 0.92948 1.04256 1.02555 1.22228 0.96651 0.78841 1.05889 1.43838 1.50131 1.12862 1.04118 1.20723 1.06525 0.91798 0.90206 1.20420 1.03881 1.02141 0.86957 1.21923 1.08495 0.98444 0.92008 1.20268 1.17043 0.95340 0.94493 1.17817 0.75815 0.82608 0.86895 1.90650 1.58441 1.82880 1.16607 1.45486 1.65591 1.12509 1.10177 1.21442 0.96087 0.86994 0.93254 0.92173 1.21654 1.00812 0.94708 0.97572 1.21946 0.94782 1.02274 0.96689 1.20772 0.94546 0.88171 0.91619 0.96833 1.21713 0.99019 1.01334 0.96378 1.44227 1.41245 1.19542 1.26711 1.19412 1.15197 1.09782 0.91819 0.90802 1.25714 1.00411 1.02866 0.95918 1.70175 1.49219 1.38694 1.00343 0.85477 0.77715 0.80924 0.78142 1.18456 1.21870 1.23474 1.20799 0.87594 0.98746 0.88033 1.20358 1.01288 0.91153 0.90227 1.20432 1.03347 1.01526 0.88840 0.88235 0.93189 0.91878 0.86867 0.88547 0.89474 0.89524 0.90175 0.83226 0.76081 0.89913 0.90856 0.92123 0.89044 0.93110 0.90490 0.94614 0.94969 0.98747 0.93867 0.89879 0.89577 0.91806 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.83 10.24 71.98 0.74 -1.09 16 2 C 0.08 1.22 6.30 86.38 0.54 1.76 16 3 N -0.43 -10.53 2.68 -495.49 -1.33 -11.86 16 4 C 0.02 0.39 6.85 40.98 0.28 0.67 16 5 C -0.08 -1.10 10.06 71.23 0.72 -0.38 16 6 C -0.19 -5.63 10.45 23.62 0.25 -5.38 16 7 C -0.26 -9.87 6.29 -19.04 -0.12 -9.99 16 8 C 0.58 25.75 7.78 86.61 0.67 26.43 16 9 O -0.60 -30.97 14.48 -4.13 -0.06 -31.02 16 10 N -0.69 -27.80 4.91 -445.57 -2.19 -29.99 16 11 C 0.13 5.40 2.81 45.07 0.13 5.52 16 12 H 0.06 2.67 7.58 -2.39 -0.02 2.65 16 13 C -0.11 -3.48 5.59 30.62 0.17 -3.31 16 14 C -0.12 -3.59 5.21 30.67 0.16 -3.43 16 15 C 0.15 6.11 3.49 44.98 0.16 6.27 16 16 H 0.01 0.58 8.14 -2.39 -0.02 0.56 16 17 C -0.13 -4.47 7.96 71.98 0.57 -3.90 16 18 N -0.59 -29.90 2.90 -675.22 -1.96 -31.86 16 19 C -0.23 -12.87 8.57 84.04 0.72 -12.15 16 20 H 0.07 3.95 6.24 -2.91 -0.02 3.93 16 21 C -0.05 -3.24 4.94 84.86 0.42 -2.82 16 22 N -0.94 -60.10 11.23 21.65 0.24 -59.85 16 23 Si 0.95 48.48 29.58 68.60 2.03 50.51 16 24 H -0.26 -12.37 7.11 99.48 0.71 -11.67 16 25 H -0.29 -14.73 7.11 99.48 0.71 -14.03 16 26 H -0.31 -16.34 7.11 99.48 0.71 -15.63 16 27 C 0.18 9.24 4.88 86.37 0.42 9.66 16 28 C 0.09 2.83 6.89 41.78 0.29 3.12 16 29 C -0.08 -2.51 9.52 71.24 0.68 -1.84 16 30 H 0.10 0.63 8.14 -2.39 -0.02 0.61 16 31 H 0.05 0.73 8.14 -2.38 -0.02 0.71 16 32 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 33 H 0.11 1.13 6.90 -2.38 -0.02 1.12 16 34 H 0.10 1.29 6.88 -2.39 -0.02 1.28 16 35 H 0.09 0.97 8.14 -2.39 -0.02 0.95 16 36 H 0.09 1.17 8.14 -2.39 -0.02 1.15 16 37 H 0.08 0.86 6.94 -2.39 -0.02 0.84 16 38 H 0.15 4.05 7.69 -2.91 -0.02 4.02 16 39 H 0.40 14.42 5.89 -92.71 -0.55 13.88 16 40 H 0.08 2.18 8.14 -2.39 -0.02 2.16 16 41 H 0.07 2.29 8.14 -2.38 -0.02 2.27 16 42 H 0.06 1.81 6.40 -2.39 -0.02 1.80 16 43 H 0.09 2.16 8.14 -2.39 -0.02 2.14 16 44 H 0.05 1.79 7.43 -2.39 -0.02 1.77 16 45 H 0.08 2.09 8.14 -2.38 -0.02 2.07 16 46 H 0.03 1.41 7.63 -2.39 -0.02 1.39 16 47 H 0.24 15.26 8.31 -92.71 -0.77 14.49 16 48 H -0.01 -0.30 8.14 -2.39 -0.02 -0.32 16 49 H 0.04 2.73 6.15 -2.38 -0.01 2.71 16 50 H 0.08 2.23 8.14 -2.39 -0.02 2.21 16 51 H 0.09 1.96 6.92 -2.39 -0.02 1.95 16 52 H 0.06 2.45 6.47 -2.38 -0.02 2.43 16 Total: -1.00 -80.69 400.06 3.89 -76.80 By element: Atomic # 1 Polarization: 27.78 SS G_CDS: 0.36 Total: 28.15 kcal Atomic # 6 Polarization: 2.34 SS G_CDS: 6.79 Total: 9.13 kcal Atomic # 7 Polarization: -128.33 SS G_CDS: -5.24 Total: -133.57 kcal Atomic # 8 Polarization: -30.97 SS G_CDS: -0.06 Total: -31.02 kcal Atomic # 14 Polarization: 48.48 SS G_CDS: 2.03 Total: 50.51 kcal Total: -80.69 3.89 -76.80 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071663413.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.004 kcal (2) G-P(sol) polarization free energy of solvation -80.693 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.689 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.891 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.802 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.798 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds