Wall clock time and date at job start Tue Mar 31 2020 18:06:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46501 * 109.47023 * 2 1 4 4 C 1.36441 * 124.85306 * 89.97569 * 3 2 1 5 5 C 1.50701 * 125.57155 * 359.97438 * 4 3 2 6 6 C 1.34485 * 108.86220 * 180.02562 * 4 3 2 7 7 C 1.46689 * 106.33076 * 359.97438 * 6 4 3 8 8 C 1.47257 * 126.94545 * 180.02562 * 7 6 4 9 9 O 1.21630 * 120.00451 * 180.02562 * 8 7 6 10 10 N 1.34779 * 120.00053 * 0.02562 * 8 7 6 11 11 C 1.46497 * 120.00210 * 179.72673 * 10 8 7 12 12 H 1.08999 * 109.49736 * 34.99390 * 11 10 8 13 13 C 1.53041 * 109.50015 * 155.06467 * 11 10 8 14 14 C 1.53039 * 109.53928 * 181.31678 * 13 11 10 15 15 C 1.53192 * 109.31166 * 298.63162 * 14 13 11 16 16 H 1.08993 * 109.59248 * 294.70996 * 15 14 13 17 17 C 1.53000 * 109.58625 * 174.42076 * 15 14 13 18 18 N 1.46928 * 108.77397 * 54.63652 * 15 14 13 19 19 C 1.36944 * 120.62832 * 126.38897 * 18 15 14 20 20 H 1.07999 * 120.00078 * 330.15902 * 19 18 15 21 21 C 1.38813 * 119.99737 * 150.16214 * 19 18 15 22 22 N 1.31624 * 119.99943 * 344.49559 * 21 19 18 23 23 Si 1.86800 * 120.00016 * 164.49528 * 21 19 18 24 24 H 1.48504 * 109.47119 * 359.97438 * 23 21 19 25 25 H 1.48491 * 109.47442 * 120.00041 * 23 21 19 26 26 H 1.48502 * 109.47081 * 240.00078 * 23 21 19 27 27 C 1.46934 * 118.76931 * 306.41153 * 18 15 14 28 28 C 1.34665 * 124.85131 * 270.31294 * 3 2 1 29 29 C 1.50701 * 125.80034 * 0.02562 * 28 3 2 30 30 H 1.09008 * 109.47251 * 60.00268 * 1 2 3 31 31 H 1.09003 * 109.47057 * 179.97438 * 1 2 3 32 32 H 1.09001 * 109.47544 * 300.00404 * 1 2 3 33 33 H 1.09002 * 109.46970 * 240.00097 * 2 1 3 34 34 H 1.08999 * 109.47362 * 119.99893 * 2 1 3 35 35 H 1.08995 * 109.47776 * 270.00175 * 5 4 3 36 36 H 1.09002 * 109.47086 * 30.00097 * 5 4 3 37 37 H 1.09001 * 109.47183 * 150.00206 * 5 4 3 38 38 H 1.07999 * 126.83816 * 180.02562 * 6 4 3 39 39 H 0.97000 * 119.99593 * 0.02562 * 10 8 7 40 40 H 1.08999 * 109.45470 * 301.33729 * 13 11 10 41 41 H 1.08999 * 109.45944 * 61.29381 * 13 11 10 42 42 H 1.09000 * 109.49786 * 58.58160 * 14 13 11 43 43 H 1.08995 * 109.49787 * 178.65289 * 14 13 11 44 44 H 1.09003 * 109.47143 * 60.00422 * 17 15 14 45 45 H 1.08998 * 109.47208 * 180.02562 * 17 15 14 46 46 H 1.09000 * 109.47466 * 300.00295 * 17 15 14 47 47 H 0.97005 * 119.99618 * 179.97438 * 22 21 19 48 48 H 1.09003 * 109.55697 * 293.78853 * 27 18 15 49 49 H 1.08998 * 109.62093 * 173.35931 * 27 18 15 50 50 H 1.09006 * 109.46818 * 270.19076 * 29 28 3 51 51 H 1.08996 * 109.47322 * 30.19076 * 29 28 3 52 52 H 1.09002 * 109.46940 * 150.19152 * 29 28 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2777 2.1165 1.1197 5 6 2.1084 1.6409 2.5396 6 6 2.7083 3.3356 0.7492 7 6 2.7120 3.3435 -0.7177 8 6 3.1065 4.4578 -1.5958 9 8 3.0601 4.3259 -2.8040 10 7 3.5189 5.6240 -1.0607 11 6 3.9171 6.7306 -1.9342 12 1 3.2954 6.7291 -2.8295 13 6 3.7399 8.0570 -1.1914 14 6 4.1244 9.2157 -2.1143 15 6 5.5970 9.0782 -2.5135 16 1 6.2272 9.1957 -1.6321 17 6 5.9513 10.1519 -3.5443 18 7 5.8061 7.7464 -3.0979 19 6 6.3804 7.6090 -4.3335 20 1 6.2534 8.3820 -5.0770 21 6 7.1257 6.4762 -4.6303 22 7 7.5392 5.6878 -3.6607 23 14 7.5419 6.0706 -6.4056 24 1 6.9638 7.1067 -7.2986 25 1 9.0170 6.0390 -6.5734 26 1 6.9753 4.7435 -6.7561 27 6 5.3871 6.5645 -2.3322 28 6 2.2691 2.1088 -1.1051 29 6 2.0948 1.6408 -2.5270 30 1 -0.3634 0.5138 -0.8901 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3634 0.5139 0.8899 33 1 1.8933 -0.5138 -0.8900 34 1 1.8933 -0.5138 0.8900 35 1 1.0988 1.8690 2.8813 36 1 2.2723 0.5642 2.5841 37 1 2.8315 2.1453 3.1805 38 1 2.9951 4.1469 1.4017 39 1 3.5562 5.7291 -0.0971 40 1 2.6992 8.1658 -0.8861 41 1 4.3800 8.0675 -0.3093 42 1 3.5012 9.1910 -3.0082 43 1 3.9752 10.1611 -1.5927 44 1 5.7836 11.1389 -3.1131 45 1 6.9992 10.0521 -3.8274 46 1 5.3236 10.0295 -4.4270 47 1 8.0597 4.8960 -3.8682 48 1 6.0004 6.4743 -1.4356 49 1 5.5006 5.6712 -2.9465 50 1 3.0206 1.1820 -2.8745 51 1 1.2876 0.9098 -2.5726 52 1 1.8504 2.4922 -3.1623 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001071663414.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:06:22 Heat of formation + Delta-G solvation = 16.794754 kcal Electronic energy + Delta-G solvation = -29865.426143 eV Core-core repulsion = 26058.678351 eV Total energy + Delta-G solvation = -3806.747791 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 333.216 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.45137 -38.93003 -37.32887 -34.25126 -34.16377 -32.72278 -32.58292 -30.71300 -29.77835 -29.36106 -28.95405 -26.06011 -25.09023 -24.42841 -23.71801 -22.17598 -21.65920 -20.45871 -19.56860 -19.24581 -18.37953 -16.81582 -16.27552 -15.85098 -15.41132 -15.26655 -14.88254 -14.68643 -13.97446 -13.70512 -13.66971 -13.60449 -13.35882 -13.30543 -13.26432 -13.16173 -12.87178 -12.62258 -12.49977 -12.39040 -12.23730 -12.15374 -11.72925 -11.65857 -11.58861 -11.31945 -11.27633 -11.01768 -10.78696 -10.63675 -10.36273 -10.28468 -10.14361 -9.85785 -9.59877 -9.30702 -9.10346 -8.54248 -8.32648 -8.24180 -7.85417 -6.48458 -5.63171 -3.07972 2.01321 2.46201 2.73566 3.48466 3.56333 3.57650 3.93853 4.11178 4.37251 4.58610 4.63228 4.66697 4.80754 4.90363 5.09366 5.21634 5.22614 5.31434 5.35760 5.46710 5.47753 5.49993 5.60320 5.65637 5.68662 5.70238 5.75164 5.79491 5.83373 5.97184 6.09671 6.14072 6.24262 6.35306 6.39341 6.45278 6.49766 6.56599 6.66603 6.74403 6.90202 6.92059 7.13839 7.16596 7.21765 7.24949 7.31249 7.49320 7.89403 7.97442 8.27952 8.61963 9.01756 9.35921 10.00349 10.56282 11.44644 Molecular weight = 333.22amu Principal moments of inertia in cm(-1) A = 0.013941 B = 0.003258 C = 0.002840 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2008.052987 B = 8593.346305 C = 9857.776427 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.095 3.905 3 N -0.440 5.440 4 C 0.004 3.996 5 C -0.080 4.080 6 C -0.165 4.165 7 C -0.223 4.223 8 C 0.587 3.413 9 O -0.545 6.545 10 N -0.717 5.717 11 C 0.120 3.880 12 H 0.080 0.920 13 C -0.116 4.116 14 C -0.126 4.126 15 C 0.165 3.835 16 H 0.024 0.976 17 C -0.136 4.136 18 N -0.584 5.584 19 C -0.251 4.251 20 H 0.069 0.931 21 C 0.006 3.994 22 N -0.899 5.899 23 Si 0.898 3.102 24 H -0.278 1.278 25 H -0.292 1.292 26 H -0.289 1.289 27 C 0.170 3.830 28 C 0.102 3.898 29 C -0.093 4.093 30 H 0.064 0.936 31 H 0.073 0.927 32 H 0.062 0.938 33 H 0.090 0.910 34 H 0.089 0.911 35 H 0.068 0.932 36 H 0.060 0.940 37 H 0.079 0.921 38 H 0.142 0.858 39 H 0.390 0.610 40 H 0.049 0.951 41 H 0.057 0.943 42 H 0.060 0.940 43 H 0.053 0.947 44 H 0.037 0.963 45 H 0.060 0.940 46 H 0.053 0.947 47 H 0.251 0.749 48 H 0.015 0.985 49 H 0.093 0.907 50 H 0.076 0.924 51 H 0.057 0.943 52 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.195 -8.746 13.000 21.143 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.027 4.027 3 N -0.118 5.118 4 C -0.103 4.103 5 C -0.138 4.138 6 C -0.189 4.189 7 C -0.233 4.233 8 C 0.375 3.625 9 O -0.424 6.424 10 N -0.366 5.366 11 C 0.014 3.986 12 H 0.098 0.902 13 C -0.154 4.154 14 C -0.166 4.166 15 C 0.059 3.941 16 H 0.041 0.959 17 C -0.193 4.193 18 N -0.307 5.307 19 C -0.381 4.381 20 H 0.087 0.913 21 C -0.193 4.193 22 N -0.543 5.543 23 Si 0.728 3.272 24 H -0.203 1.203 25 H -0.219 1.219 26 H -0.216 1.216 27 C 0.043 3.957 28 C -0.014 4.014 29 C -0.150 4.150 30 H 0.083 0.917 31 H 0.092 0.908 32 H 0.082 0.918 33 H 0.108 0.892 34 H 0.108 0.892 35 H 0.086 0.914 36 H 0.079 0.921 37 H 0.098 0.902 38 H 0.160 0.840 39 H 0.223 0.777 40 H 0.068 0.932 41 H 0.076 0.924 42 H 0.079 0.921 43 H 0.072 0.928 44 H 0.056 0.944 45 H 0.079 0.921 46 H 0.072 0.928 47 H 0.061 0.939 48 H 0.033 0.967 49 H 0.111 0.889 50 H 0.094 0.906 51 H 0.076 0.924 52 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -14.222 -9.292 12.120 20.868 hybrid contribution 0.342 -0.349 -0.206 0.530 sum -13.880 -9.641 11.914 20.678 Atomic orbital electron populations 1.22166 0.94369 1.02851 1.03334 1.21824 0.95533 0.80991 1.04348 1.43574 1.51525 1.11579 1.05114 1.20100 1.08965 0.92734 0.88503 1.20284 1.02568 1.00972 0.89927 1.21756 1.07120 0.96740 0.93297 1.20253 1.14807 0.95134 0.93097 1.17278 0.76588 0.81613 0.87059 1.90755 1.54952 1.82127 1.14564 1.45821 1.67359 1.13725 1.09719 1.21895 1.00584 0.83553 0.92553 0.90174 1.21672 0.99831 0.95243 0.98658 1.22041 0.99638 0.96093 0.98783 1.20475 0.91967 0.87188 0.94512 0.95862 1.21800 1.02352 0.96007 0.99188 1.44041 1.69540 0.98954 1.18210 1.19162 1.24718 1.05320 0.88878 0.91306 1.25079 0.97340 0.99727 0.97111 1.70029 1.38395 1.15914 1.29938 0.86288 0.77390 0.78241 0.85243 1.20253 1.21908 1.21564 1.21065 0.87059 0.92379 0.95173 1.20251 1.01174 0.90987 0.88973 1.20557 1.01781 1.02912 0.89739 0.91698 0.90813 0.91846 0.89152 0.89233 0.91365 0.92091 0.90202 0.84015 0.77665 0.93178 0.92412 0.92131 0.92837 0.94430 0.92069 0.92808 0.93886 0.96660 0.88920 0.90572 0.92408 0.87913 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.09 10.24 37.16 0.38 -0.71 16 2 C 0.09 0.72 6.08 -4.04 -0.02 0.70 16 3 N -0.44 -5.12 2.69 -107.96 -0.29 -5.41 16 4 C 0.00 0.05 6.85 -81.87 -0.56 -0.51 16 5 C -0.08 -0.60 10.06 36.01 0.36 -0.24 16 6 C -0.16 -2.23 10.45 -37.50 -0.39 -2.62 16 7 C -0.22 -3.73 6.29 -103.35 -0.65 -4.38 16 8 C 0.59 11.73 7.78 -12.59 -0.10 11.64 16 9 O -0.55 -12.91 14.48 5.25 0.08 -12.84 16 10 N -0.72 -13.21 5.07 -54.81 -0.28 -13.48 16 11 C 0.12 2.49 2.61 -67.81 -0.18 2.32 16 12 H 0.08 1.89 7.57 -51.93 -0.39 1.49 16 13 C -0.12 -2.01 5.36 -26.69 -0.14 -2.15 16 14 C -0.13 -2.25 5.37 -26.61 -0.14 -2.40 16 15 C 0.17 3.53 3.50 -67.60 -0.24 3.29 16 16 H 0.02 0.52 8.14 -51.93 -0.42 0.09 16 17 C -0.14 -2.65 7.95 37.16 0.30 -2.35 16 18 N -0.58 -15.10 2.99 -164.76 -0.49 -15.60 16 19 C -0.25 -7.09 8.58 -15.06 -0.13 -7.22 16 20 H 0.07 1.89 6.23 -52.49 -0.33 1.57 16 21 C 0.01 0.19 4.94 -17.43 -0.09 0.10 16 22 N -0.90 -27.48 11.23 55.49 0.62 -26.85 16 23 Si 0.90 22.95 29.58 -169.99 -5.03 17.92 16 24 H -0.28 -6.88 7.11 56.52 0.40 -6.47 16 25 H -0.29 -7.42 7.11 56.52 0.40 -7.02 16 26 H -0.29 -7.53 7.11 56.52 0.40 -7.13 16 27 C 0.17 4.33 4.86 -3.70 -0.02 4.31 16 28 C 0.10 1.50 6.89 -81.88 -0.56 0.94 16 29 C -0.09 -1.26 9.26 36.01 0.33 -0.93 16 30 H 0.06 0.49 8.11 -51.92 -0.42 0.07 16 31 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 32 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 33 H 0.09 0.63 7.51 -51.93 -0.39 0.24 16 34 H 0.09 0.53 6.90 -51.93 -0.36 0.17 16 35 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 36 H 0.06 0.38 6.94 -51.93 -0.36 0.02 16 37 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 38 H 0.14 1.62 7.70 -52.49 -0.40 1.22 16 39 H 0.39 5.97 7.73 -40.82 -0.32 5.65 16 40 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 41 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 42 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 43 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 44 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 45 H 0.06 1.28 7.67 -51.93 -0.40 0.88 16 46 H 0.05 1.07 7.40 -51.93 -0.38 0.68 16 47 H 0.25 7.47 8.31 -40.82 -0.34 7.14 16 48 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 49 H 0.09 2.78 6.15 -51.93 -0.32 2.46 16 50 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 51 H 0.06 0.59 7.56 -51.93 -0.39 0.20 16 52 H 0.10 1.65 6.47 -51.93 -0.34 1.32 16 LS Contribution 404.34 15.07 6.09 6.09 Total: -1.00 -34.84 404.34 -10.15 -45.00 By element: Atomic # 1 Polarization: 14.39 SS G_CDS: -9.01 Total: 5.38 kcal Atomic # 6 Polarization: 1.64 SS G_CDS: -1.85 Total: -0.21 kcal Atomic # 7 Polarization: -60.91 SS G_CDS: -0.44 Total: -61.35 kcal Atomic # 8 Polarization: -12.91 SS G_CDS: 0.08 Total: -12.84 kcal Atomic # 14 Polarization: 22.95 SS G_CDS: -5.03 Total: 17.92 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -34.84 -10.15 -45.00 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071663414.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.791 kcal (2) G-P(sol) polarization free energy of solvation -34.842 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.948 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.154 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.996 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.795 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds