Wall clock time and date at job start Tue Mar 31 2020 18:06:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46501 * 109.47023 * 2 1 4 4 C 1.36441 * 124.85306 * 89.97569 * 3 2 1 5 5 C 1.50701 * 125.57155 * 359.97438 * 4 3 2 6 6 C 1.34485 * 108.86220 * 180.02562 * 4 3 2 7 7 C 1.46689 * 106.33076 * 359.97438 * 6 4 3 8 8 C 1.47257 * 126.94545 * 180.02562 * 7 6 4 9 9 O 1.21630 * 120.00451 * 180.02562 * 8 7 6 10 10 N 1.34779 * 120.00053 * 0.02562 * 8 7 6 11 11 C 1.46497 * 120.00210 * 179.72673 * 10 8 7 12 12 H 1.08999 * 109.49736 * 34.99390 * 11 10 8 13 13 C 1.53041 * 109.50015 * 155.06467 * 11 10 8 14 14 C 1.53039 * 109.53928 * 181.31678 * 13 11 10 15 15 C 1.53192 * 109.31166 * 298.63162 * 14 13 11 16 16 H 1.08993 * 109.59248 * 294.70996 * 15 14 13 17 17 C 1.53000 * 109.58625 * 174.42076 * 15 14 13 18 18 N 1.46928 * 108.77397 * 54.63652 * 15 14 13 19 19 C 1.36944 * 120.62832 * 126.38897 * 18 15 14 20 20 H 1.07999 * 120.00078 * 330.15902 * 19 18 15 21 21 C 1.38813 * 119.99737 * 150.16214 * 19 18 15 22 22 N 1.31624 * 119.99943 * 344.49559 * 21 19 18 23 23 Si 1.86800 * 120.00016 * 164.49528 * 21 19 18 24 24 H 1.48504 * 109.47119 * 359.97438 * 23 21 19 25 25 H 1.48491 * 109.47442 * 120.00041 * 23 21 19 26 26 H 1.48502 * 109.47081 * 240.00078 * 23 21 19 27 27 C 1.46934 * 118.76931 * 306.41153 * 18 15 14 28 28 C 1.34665 * 124.85131 * 270.31294 * 3 2 1 29 29 C 1.50701 * 125.80034 * 0.02562 * 28 3 2 30 30 H 1.09008 * 109.47251 * 60.00268 * 1 2 3 31 31 H 1.09003 * 109.47057 * 179.97438 * 1 2 3 32 32 H 1.09001 * 109.47544 * 300.00404 * 1 2 3 33 33 H 1.09002 * 109.46970 * 240.00097 * 2 1 3 34 34 H 1.08999 * 109.47362 * 119.99893 * 2 1 3 35 35 H 1.08995 * 109.47776 * 270.00175 * 5 4 3 36 36 H 1.09002 * 109.47086 * 30.00097 * 5 4 3 37 37 H 1.09001 * 109.47183 * 150.00206 * 5 4 3 38 38 H 1.07999 * 126.83816 * 180.02562 * 6 4 3 39 39 H 0.97000 * 119.99593 * 0.02562 * 10 8 7 40 40 H 1.08999 * 109.45470 * 301.33729 * 13 11 10 41 41 H 1.08999 * 109.45944 * 61.29381 * 13 11 10 42 42 H 1.09000 * 109.49786 * 58.58160 * 14 13 11 43 43 H 1.08995 * 109.49787 * 178.65289 * 14 13 11 44 44 H 1.09003 * 109.47143 * 60.00422 * 17 15 14 45 45 H 1.08998 * 109.47208 * 180.02562 * 17 15 14 46 46 H 1.09000 * 109.47466 * 300.00295 * 17 15 14 47 47 H 0.97005 * 119.99618 * 179.97438 * 22 21 19 48 48 H 1.09003 * 109.55697 * 293.78853 * 27 18 15 49 49 H 1.08998 * 109.62093 * 173.35931 * 27 18 15 50 50 H 1.09006 * 109.46818 * 270.19076 * 29 28 3 51 51 H 1.08996 * 109.47322 * 30.19076 * 29 28 3 52 52 H 1.09002 * 109.46940 * 150.19152 * 29 28 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2777 2.1165 1.1197 5 6 2.1084 1.6409 2.5396 6 6 2.7083 3.3356 0.7492 7 6 2.7120 3.3435 -0.7177 8 6 3.1065 4.4578 -1.5958 9 8 3.0601 4.3259 -2.8040 10 7 3.5189 5.6240 -1.0607 11 6 3.9171 6.7306 -1.9342 12 1 3.2954 6.7291 -2.8295 13 6 3.7399 8.0570 -1.1914 14 6 4.1244 9.2157 -2.1143 15 6 5.5970 9.0782 -2.5135 16 1 6.2272 9.1957 -1.6321 17 6 5.9513 10.1519 -3.5443 18 7 5.8061 7.7464 -3.0979 19 6 6.3804 7.6090 -4.3335 20 1 6.2534 8.3820 -5.0770 21 6 7.1257 6.4762 -4.6303 22 7 7.5392 5.6878 -3.6607 23 14 7.5419 6.0706 -6.4056 24 1 6.9638 7.1067 -7.2986 25 1 9.0170 6.0390 -6.5734 26 1 6.9753 4.7435 -6.7561 27 6 5.3871 6.5645 -2.3322 28 6 2.2691 2.1088 -1.1051 29 6 2.0948 1.6408 -2.5270 30 1 -0.3634 0.5138 -0.8901 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3634 0.5139 0.8899 33 1 1.8933 -0.5138 -0.8900 34 1 1.8933 -0.5138 0.8900 35 1 1.0988 1.8690 2.8813 36 1 2.2723 0.5642 2.5841 37 1 2.8315 2.1453 3.1805 38 1 2.9951 4.1469 1.4017 39 1 3.5562 5.7291 -0.0971 40 1 2.6992 8.1658 -0.8861 41 1 4.3800 8.0675 -0.3093 42 1 3.5012 9.1910 -3.0082 43 1 3.9752 10.1611 -1.5927 44 1 5.7836 11.1389 -3.1131 45 1 6.9992 10.0521 -3.8274 46 1 5.3236 10.0295 -4.4270 47 1 8.0597 4.8960 -3.8682 48 1 6.0004 6.4743 -1.4356 49 1 5.5006 5.6712 -2.9465 50 1 3.0206 1.1820 -2.8745 51 1 1.2876 0.9098 -2.5726 52 1 1.8504 2.4922 -3.1623 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001071663414.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:06:21 Heat of formation + Delta-G solvation = -5.052273 kcal Electronic energy + Delta-G solvation = -29866.373501 eV Core-core repulsion = 26058.678351 eV Total energy + Delta-G solvation = -3807.695149 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 333.216 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -42.45621 -40.54206 -39.04226 -35.92412 -35.01753 -34.61517 -33.57754 -32.27060 -31.73356 -30.26410 -29.91409 -27.76238 -26.88273 -25.65806 -24.53822 -23.96580 -22.86403 -21.99616 -21.15789 -20.72293 -19.53053 -18.31346 -17.94905 -17.32090 -16.72655 -16.57480 -16.33498 -15.82706 -15.67905 -15.35231 -15.29052 -14.93936 -14.73672 -14.38708 -14.34914 -14.19435 -14.05619 -13.97073 -13.70059 -13.51466 -13.41591 -13.16551 -13.07072 -12.87932 -12.74685 -12.70674 -12.55347 -12.49103 -12.27122 -12.26478 -12.09525 -12.08409 -11.95585 -11.64404 -11.38122 -11.11957 -10.72104 -10.53748 -10.01607 -9.50145 -8.91680 -8.60218 -7.83715 -5.30818 0.78188 1.39602 1.44224 1.46651 1.52561 1.83427 2.43443 2.55420 2.67147 3.32772 3.69270 3.77319 3.78833 3.89560 3.97961 4.10440 4.10825 4.15382 4.25699 4.33621 4.35372 4.42096 4.50786 4.60611 4.63203 4.66270 4.72727 4.77585 4.82971 4.84030 4.86454 4.90762 4.96686 5.01731 5.02958 5.07592 5.14223 5.19825 5.24547 5.29082 5.33064 5.41476 5.55916 5.57868 5.64019 5.71603 5.83324 5.86658 6.15858 6.40500 6.43304 6.81804 7.16815 7.50677 7.91207 8.41353 9.21425 Molecular weight = 333.22amu Principal moments of inertia in cm(-1) A = 0.013941 B = 0.003258 C = 0.002840 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2008.052987 B = 8593.346305 C = 9857.776427 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.084 3.916 3 N -0.432 5.432 4 C 0.017 3.983 5 C -0.078 4.078 6 C -0.184 4.184 7 C -0.264 4.264 8 C 0.577 3.423 9 O -0.596 6.596 10 N -0.707 5.707 11 C 0.134 3.866 12 H 0.048 0.952 13 C -0.107 4.107 14 C -0.117 4.117 15 C 0.153 3.847 16 H 0.021 0.979 17 C -0.128 4.128 18 N -0.603 5.603 19 C -0.250 4.250 20 H 0.075 0.925 21 C -0.055 4.055 22 N -0.934 5.934 23 Si 0.957 3.043 24 H -0.261 1.261 25 H -0.287 1.287 26 H -0.301 1.301 27 C 0.185 3.815 28 C 0.092 3.908 29 C -0.087 4.087 30 H 0.048 0.952 31 H 0.099 0.901 32 H 0.063 0.937 33 H 0.096 0.904 34 H 0.116 0.884 35 H 0.085 0.915 36 H 0.080 0.920 37 H 0.089 0.911 38 H 0.158 0.842 39 H 0.408 0.592 40 H 0.083 0.917 41 H 0.071 0.929 42 H 0.052 0.948 43 H 0.097 0.903 44 H 0.080 0.920 45 H 0.038 0.962 46 H 0.045 0.955 47 H 0.243 0.757 48 H -0.006 1.006 49 H 0.038 0.962 50 H 0.068 0.932 51 H 0.092 0.908 52 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.162 -8.674 15.534 24.037 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.036 4.036 3 N -0.109 5.109 4 C -0.091 4.091 5 C -0.135 4.135 6 C -0.208 4.208 7 C -0.274 4.274 8 C 0.368 3.632 9 O -0.479 6.479 10 N -0.357 5.357 11 C 0.028 3.972 12 H 0.066 0.934 13 C -0.145 4.145 14 C -0.156 4.156 15 C 0.048 3.952 16 H 0.039 0.961 17 C -0.186 4.186 18 N -0.327 5.327 19 C -0.380 4.380 20 H 0.093 0.907 21 C -0.250 4.250 22 N -0.581 5.581 23 Si 0.786 3.214 24 H -0.185 1.185 25 H -0.214 1.214 26 H -0.229 1.229 27 C 0.057 3.943 28 C -0.026 4.026 29 C -0.145 4.145 30 H 0.067 0.933 31 H 0.118 0.882 32 H 0.082 0.918 33 H 0.115 0.885 34 H 0.134 0.866 35 H 0.104 0.896 36 H 0.098 0.902 37 H 0.108 0.892 38 H 0.175 0.825 39 H 0.244 0.756 40 H 0.101 0.899 41 H 0.090 0.910 42 H 0.070 0.930 43 H 0.115 0.885 44 H 0.098 0.902 45 H 0.057 0.943 46 H 0.064 0.936 47 H 0.052 0.948 48 H 0.012 0.988 49 H 0.057 0.943 50 H 0.087 0.913 51 H 0.111 0.889 52 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -16.213 -9.191 14.706 23.740 hybrid contribution 0.917 -0.413 -0.925 1.367 sum -15.295 -9.603 13.781 22.717 Atomic orbital electron populations 1.22134 0.93143 1.04302 1.02554 1.22233 0.96506 0.78782 1.06042 1.43877 1.50105 1.12786 1.04140 1.20769 1.06275 0.91880 0.90185 1.20434 1.03920 1.02226 0.86901 1.21979 1.08548 0.98567 0.91669 1.20206 1.17526 0.95048 0.94579 1.17934 0.75751 0.82565 0.86956 1.90716 1.57223 1.83041 1.16907 1.45659 1.66731 1.12973 1.10343 1.21461 0.96411 0.86535 0.92804 0.93364 1.21637 1.02203 0.92276 0.98343 1.21950 0.96378 0.98250 0.99051 1.20811 0.94502 0.85189 0.94734 0.96114 1.21728 1.00638 0.97566 0.98647 1.44339 1.69621 1.00861 1.17922 1.19518 1.23276 1.05011 0.90208 0.90721 1.25841 0.98310 1.00212 1.00622 1.70195 1.39906 1.16288 1.31695 0.85346 0.77202 0.77529 0.81343 1.18524 1.21388 1.22876 1.20705 0.89837 0.90684 0.93024 1.20340 1.01061 0.91096 0.90134 1.20452 1.02618 1.02361 0.89040 0.93271 0.88231 0.91822 0.88527 0.86606 0.89647 0.90156 0.89200 0.82454 0.75636 0.89874 0.91006 0.92952 0.88484 0.90168 0.94301 0.93575 0.94771 0.98846 0.94337 0.91294 0.88928 0.91103 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.62 10.24 71.98 0.74 -0.88 16 2 C 0.08 1.05 6.08 86.38 0.53 1.57 16 3 N -0.43 -9.39 2.69 -495.48 -1.33 -10.72 16 4 C 0.02 0.36 6.85 40.98 0.28 0.64 16 5 C -0.08 -0.87 10.06 71.24 0.72 -0.15 16 6 C -0.18 -4.85 10.45 23.62 0.25 -4.61 16 7 C -0.26 -9.15 6.29 -19.04 -0.12 -9.27 16 8 C 0.58 24.67 7.78 86.61 0.67 25.35 16 9 O -0.60 -30.84 14.48 -4.13 -0.06 -30.89 16 10 N -0.71 -27.09 5.07 -445.58 -2.26 -29.35 16 11 C 0.13 5.79 2.61 45.07 0.12 5.91 16 12 H 0.05 2.40 7.57 -2.39 -0.02 2.38 16 13 C -0.11 -3.49 5.36 30.62 0.16 -3.33 16 14 C -0.12 -3.90 5.37 30.67 0.16 -3.73 16 15 C 0.15 6.40 3.50 44.97 0.16 6.56 16 16 H 0.02 0.90 8.14 -2.39 -0.02 0.88 16 17 C -0.13 -4.82 7.95 71.98 0.57 -4.25 16 18 N -0.60 -32.21 2.99 -675.19 -2.02 -34.23 16 19 C -0.25 -14.58 8.58 84.03 0.72 -13.86 16 20 H 0.08 4.19 6.23 -2.91 -0.02 4.17 16 21 C -0.05 -3.34 4.94 84.86 0.42 -2.92 16 22 N -0.93 -60.53 11.23 21.65 0.24 -60.29 16 23 Si 0.96 49.19 29.58 68.60 2.03 51.22 16 24 H -0.26 -12.56 7.11 99.48 0.71 -11.86 16 25 H -0.29 -14.39 7.11 99.48 0.71 -13.68 16 26 H -0.30 -15.94 7.11 99.48 0.71 -15.23 16 27 C 0.18 9.95 4.86 86.36 0.42 10.37 16 28 C 0.09 2.75 6.89 41.78 0.29 3.04 16 29 C -0.09 -2.50 9.26 71.24 0.66 -1.84 16 30 H 0.05 0.65 8.11 -2.38 -0.02 0.64 16 31 H 0.10 0.50 8.14 -2.39 -0.02 0.48 16 32 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 33 H 0.10 1.11 7.51 -2.39 -0.02 1.09 16 34 H 0.12 0.88 6.90 -2.39 -0.02 0.86 16 35 H 0.08 0.74 8.14 -2.39 -0.02 0.72 16 36 H 0.08 0.63 6.94 -2.39 -0.02 0.61 16 37 H 0.09 0.88 8.14 -2.39 -0.02 0.86 16 38 H 0.16 3.41 7.70 -2.91 -0.02 3.39 16 39 H 0.41 12.53 7.73 -92.71 -0.72 11.82 16 40 H 0.08 2.25 8.14 -2.39 -0.02 2.23 16 41 H 0.07 2.19 8.14 -2.39 -0.02 2.17 16 42 H 0.05 1.85 8.14 -2.39 -0.02 1.83 16 43 H 0.10 2.47 8.14 -2.39 -0.02 2.45 16 44 H 0.08 2.31 8.14 -2.39 -0.02 2.29 16 45 H 0.04 1.60 7.67 -2.39 -0.02 1.58 16 46 H 0.05 1.78 7.40 -2.39 -0.02 1.76 16 47 H 0.24 15.41 8.31 -92.70 -0.77 14.64 16 48 H -0.01 -0.37 8.14 -2.39 -0.02 -0.39 16 49 H 0.04 2.49 6.15 -2.39 -0.01 2.47 16 50 H 0.07 2.02 8.14 -2.38 -0.02 2.00 16 51 H 0.09 1.88 7.56 -2.39 -0.02 1.86 16 52 H 0.07 2.50 6.47 -2.39 -0.02 2.49 16 Total: -1.00 -84.04 404.34 3.53 -80.50 By element: Atomic # 1 Polarization: 24.97 SS G_CDS: 0.19 Total: 25.16 kcal Atomic # 6 Polarization: 1.86 SS G_CDS: 6.74 Total: 8.60 kcal Atomic # 7 Polarization: -129.22 SS G_CDS: -5.36 Total: -134.59 kcal Atomic # 8 Polarization: -30.84 SS G_CDS: -0.06 Total: -30.89 kcal Atomic # 14 Polarization: 49.19 SS G_CDS: 2.03 Total: 51.22 kcal Total: -84.04 3.53 -80.50 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071663414.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.450 kcal (2) G-P(sol) polarization free energy of solvation -84.037 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.587 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.534 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.502 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.052 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds