Wall clock time and date at job start Tue Mar 31 2020 17:53:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08994 * 109.47277 * 2 1 4 4 C 1.47202 * 109.47064 * 120.00704 * 2 1 3 5 5 N 2.60802 * 109.47087 * 120.00607 * 2 1 3 6 6 C 1.50703 * 109.46443 * 240.00439 * 2 1 3 7 7 O 1.21284 * 119.99709 * 250.11118 * 6 2 1 8 8 N 1.34771 * 120.00198 * 70.11756 * 6 2 1 9 9 C 1.46926 * 120.63073 * 182.69566 * 8 6 2 10 10 C 1.52771 * 109.00601 * 233.58175 * 9 8 6 11 11 C 1.53045 * 109.37849 * 305.58447 * 10 9 8 12 12 C 1.53002 * 109.45502 * 181.26323 * 11 10 9 13 13 H 1.08995 * 109.20270 * 306.70799 * 12 11 10 14 14 C 1.50120 * 109.20927 * 66.07125 * 12 11 10 15 15 C 1.52528 * 105.41798 * 218.02321 * 14 12 11 16 16 C 1.46244 * 114.27789 * 270.60161 * 15 14 12 17 17 N 1.50162 * 107.53514 * 58.40363 * 16 15 14 18 18 C 1.36932 * 120.53687 * 109.56550 * 17 16 15 19 19 H 1.08005 * 120.00032 * 157.61999 * 18 17 16 20 20 C 1.38813 * 120.00347 * 337.62463 * 18 17 16 21 21 N 1.31618 * 119.99627 * 339.98242 * 20 18 17 22 22 Si 1.86797 * 120.00091 * 159.98168 * 20 18 17 23 23 H 1.48505 * 109.47205 * 90.00311 * 22 20 18 24 24 H 1.48504 * 109.47084 * 210.00080 * 22 20 18 25 25 H 1.48498 * 109.47304 * 329.99896 * 22 20 18 26 26 C 1.43434 * 118.92650 * 289.58820 * 17 16 15 27 27 C 1.54839 * 109.20695 * 187.35258 * 12 11 10 28 28 C 1.53038 * 109.53743 * 61.24341 * 11 10 9 29 29 C 1.46927 * 120.63183 * 2.96662 * 8 6 2 30 30 H 1.09009 * 109.46764 * 302.26155 * 1 2 3 31 31 H 1.08995 * 109.47264 * 62.25389 * 1 2 3 32 32 H 1.08998 * 109.47273 * 182.26142 * 1 2 3 33 33 H 1.09005 * 109.58430 * 353.40722 * 9 8 6 34 34 H 1.08995 * 109.59503 * 113.84067 * 9 8 6 35 35 H 1.08999 * 109.56258 * 185.55273 * 10 9 8 36 36 H 1.08999 * 109.38660 * 65.50950 * 10 9 8 37 37 H 1.09002 * 109.44658 * 301.22663 * 11 10 9 38 38 H 1.08996 * 110.25157 * 337.00043 * 14 12 11 39 39 H 1.09002 * 110.24763 * 98.90845 * 14 12 11 40 40 H 1.09003 * 108.52445 * 31.84043 * 15 14 12 41 41 H 1.09001 * 108.52238 * 149.35986 * 15 14 12 42 42 H 1.09000 * 109.84298 * 177.91514 * 16 15 14 43 43 H 1.09002 * 109.84304 * 298.89638 * 16 15 14 44 44 H 0.97003 * 119.99810 * 179.97438 * 21 20 18 45 45 H 1.08997 * 108.15972 * 213.28780 * 26 17 16 46 46 H 1.09010 * 108.15761 * 330.06311 * 26 17 16 47 47 H 1.08998 * 109.35882 * 320.99334 * 27 12 11 48 48 H 1.09002 * 109.36238 * 80.58300 * 27 12 11 49 49 H 1.08999 * 109.49466 * 178.67967 * 28 11 10 50 50 H 1.08995 * 109.50194 * 58.58484 * 28 11 10 51 51 H 1.09000 * 109.58971 * 246.15965 * 29 8 6 52 52 H 1.08998 * 109.58368 * 6.58683 * 29 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0207 -0.6941 1.2018 5 7 2.3993 -1.2297 2.1293 6 6 2.0322 -0.7104 -1.2306 7 8 2.5712 -1.7921 -1.1288 8 7 1.8825 -0.1436 -2.4441 9 6 2.3135 -0.8496 -3.6584 10 6 3.2538 0.0553 -4.4527 11 6 2.5657 1.3967 -4.7160 12 6 3.4937 2.2928 -5.5385 13 1 4.4606 2.3610 -5.0400 14 6 3.6817 1.6910 -6.9009 15 6 5.1425 1.9452 -7.2585 16 6 5.3811 3.2132 -7.9470 17 7 4.8890 4.3137 -7.0517 18 6 5.7740 5.1577 -6.4357 19 1 5.4486 6.1324 -6.1030 20 6 7.0896 4.7608 -6.2390 21 7 7.4026 3.4827 -6.2679 22 14 8.4155 6.0405 -5.9332 23 1 8.5343 6.2915 -4.4743 24 1 9.7132 5.5438 -6.4572 25 1 8.0533 7.3037 -6.6249 26 6 3.4769 4.4663 -6.8518 27 6 2.8739 3.7079 -5.6437 28 6 2.2474 2.0788 -3.3835 29 6 1.2906 1.1946 -2.5775 30 1 -0.3633 0.5486 0.8691 31 1 -0.3633 0.4784 -0.9094 32 1 -0.3634 -1.0268 0.0405 33 1 2.8366 -1.7653 -3.3824 34 1 1.4435 -1.0928 -4.2681 35 1 3.5012 -0.4192 -5.4023 36 1 4.1663 0.2207 -3.8800 37 1 1.6408 1.2280 -5.2677 38 1 3.4814 0.6200 -6.8711 39 1 3.0244 2.1771 -7.6219 40 1 5.7308 1.9334 -6.3409 41 1 5.4887 1.1334 -7.8982 42 1 6.4477 3.3375 -8.1343 43 1 4.8345 3.2309 -8.8899 44 1 8.3220 3.2054 -6.1308 45 1 3.2641 5.5280 -6.7273 46 1 2.9673 4.1232 -7.7523 47 1 1.7951 3.6211 -5.7729 48 1 3.0828 4.2628 -4.7290 49 1 1.7785 3.0445 -3.5721 50 1 3.1690 2.2251 -2.8203 51 1 0.3353 1.1214 -3.0973 52 1 1.1388 1.6271 -1.5887 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001075448416.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:53:29 Heat of formation + Delta-G solvation = 9.163305 kcal Electronic energy + Delta-G solvation = -30234.577044 eV Core-core repulsion = 26427.498328 eV Total energy + Delta-G solvation = -3807.078716 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 333.216 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -40.78656 -38.92276 -37.22703 -36.63807 -34.68376 -33.68675 -32.09256 -31.68583 -30.91480 -30.01828 -26.75076 -25.83811 -25.07232 -24.08625 -22.85084 -22.54932 -21.03284 -19.95314 -19.43160 -18.72691 -17.87247 -17.56587 -16.50270 -16.08445 -15.55344 -14.96918 -14.81091 -14.49491 -14.32895 -14.15438 -13.96012 -13.79881 -13.59672 -13.36405 -13.27897 -13.01270 -12.85305 -12.61499 -12.56459 -12.48603 -12.16176 -11.97176 -11.86422 -11.76983 -11.38159 -11.26791 -11.24092 -11.00411 -10.78451 -10.71331 -10.61101 -10.37065 -10.03083 -9.94778 -9.78218 -9.52262 -9.45091 -9.37178 -9.16714 -8.79068 -8.41008 -6.69509 -5.77848 -3.15304 2.17596 2.25509 2.54819 2.91685 3.37091 3.45540 3.47529 3.48565 4.08289 4.40856 4.50983 4.51851 4.66815 4.84711 4.89145 5.02276 5.07426 5.17166 5.22428 5.26227 5.35790 5.42227 5.48354 5.54818 5.63572 5.70662 5.75811 5.81243 5.89019 5.97936 6.07010 6.17566 6.19879 6.34398 6.34833 6.38295 6.43504 6.54210 6.61548 6.69597 6.87441 6.96678 7.03157 7.06436 7.12666 7.29718 7.30244 7.33167 7.66402 7.75883 7.81888 8.02973 8.44039 9.21011 9.89512 10.42518 11.29135 Molecular weight = 333.22amu Principal moments of inertia in cm(-1) A = 0.014957 B = 0.002942 C = 0.002753 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1871.529211 B = 9515.609713 C =10169.748429 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.014 4.014 3 H 0.139 0.861 4 C 0.223 3.777 5 N -0.414 5.414 6 C 0.524 3.476 7 O -0.533 6.533 8 N -0.600 5.600 9 C 0.113 3.887 10 C -0.131 4.131 11 C -0.083 4.083 12 C -0.066 4.066 13 H 0.081 0.919 14 C -0.111 4.111 15 C -0.129 4.129 16 C 0.165 3.835 17 N -0.587 5.587 18 C -0.246 4.246 19 H 0.065 0.935 20 C 0.001 3.999 21 N -0.899 5.899 22 Si 0.896 3.104 23 H -0.290 1.290 24 H -0.291 1.291 25 H -0.282 1.282 26 C 0.159 3.841 27 C -0.136 4.136 28 C -0.133 4.133 29 C 0.100 3.900 30 H 0.080 0.920 31 H 0.085 0.915 32 H 0.071 0.929 33 H 0.090 0.910 34 H 0.068 0.932 35 H 0.080 0.920 36 H 0.068 0.932 37 H 0.064 0.936 38 H 0.047 0.953 39 H 0.052 0.948 40 H 0.099 0.901 41 H 0.021 0.979 42 H 0.088 0.912 43 H 0.002 0.998 44 H 0.251 0.749 45 H 0.028 0.972 46 H 0.025 0.975 47 H 0.042 0.958 48 H 0.049 0.951 49 H 0.082 0.918 50 H 0.069 0.931 51 H 0.074 0.926 52 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.762 -4.625 4.802 18.039 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.039 4.039 3 H 0.157 0.843 4 C -0.097 4.097 5 N -0.089 5.089 6 C 0.310 3.690 7 O -0.409 6.409 8 N -0.333 5.333 9 C -0.009 4.009 10 C -0.169 4.169 11 C -0.101 4.101 12 C -0.085 4.085 13 H 0.099 0.901 14 C -0.148 4.148 15 C -0.167 4.167 16 C 0.042 3.958 17 N -0.308 5.308 18 C -0.376 4.376 19 H 0.083 0.917 20 C -0.196 4.196 21 N -0.544 5.544 22 Si 0.726 3.274 23 H -0.217 1.217 24 H -0.217 1.217 25 H -0.207 1.207 26 C 0.029 3.971 27 C -0.177 4.177 28 C -0.171 4.171 29 C -0.023 4.023 30 H 0.099 0.901 31 H 0.104 0.896 32 H 0.090 0.910 33 H 0.108 0.892 34 H 0.086 0.914 35 H 0.099 0.901 36 H 0.087 0.913 37 H 0.082 0.918 38 H 0.066 0.934 39 H 0.071 0.929 40 H 0.117 0.883 41 H 0.040 0.960 42 H 0.106 0.894 43 H 0.020 0.980 44 H 0.061 0.939 45 H 0.046 0.954 46 H 0.044 0.956 47 H 0.060 0.940 48 H 0.067 0.933 49 H 0.100 0.900 50 H 0.088 0.912 51 H 0.093 0.907 52 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -15.709 -6.070 6.252 17.964 hybrid contribution 0.689 0.885 -0.101 1.126 sum -15.020 -5.185 6.150 17.039 Atomic orbital electron populations 1.21864 0.89408 1.04431 1.04613 1.18873 0.98962 1.00236 0.85781 0.84326 1.28087 0.93820 0.93818 0.93926 1.81188 1.07651 1.07924 1.12117 1.19928 0.79300 0.85854 0.83967 1.90771 1.42865 1.21491 1.85813 1.48042 1.61128 1.18306 1.05860 1.21630 0.98570 0.96211 0.84477 1.21973 0.98651 0.95889 1.00388 1.21326 0.98936 0.94578 0.95280 1.21091 0.98862 0.93303 0.95221 0.90050 1.21135 0.98631 0.98221 0.96812 1.20962 0.94493 0.97502 1.03766 1.20156 1.00162 0.86500 0.88987 1.44218 0.99995 1.35426 1.51178 1.19171 0.90673 0.94787 1.32928 0.91693 1.24844 0.98534 0.95496 1.00762 1.69977 1.17754 1.12940 1.53740 0.86402 0.81839 0.81410 0.77740 1.21678 1.21708 1.20735 1.20372 0.86185 0.96456 0.94042 1.22954 0.97276 0.96167 1.01265 1.22056 0.99743 0.98639 0.96635 1.22042 0.96974 0.81792 1.01456 0.90130 0.89571 0.90986 0.89155 0.91388 0.90131 0.91320 0.91790 0.93417 0.92941 0.88294 0.96049 0.89365 0.97954 0.93861 0.95385 0.95628 0.93960 0.93263 0.89953 0.91216 0.90745 0.89700 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.65 8.81 37.16 0.33 -0.32 16 2 C -0.01 -0.11 2.25 -94.56 -0.21 -0.32 16 3 H 0.14 0.65 7.00 -51.93 -0.36 0.29 16 4 C 0.22 2.54 13.91 -20.76 -0.29 2.25 16 5 N -0.41 -5.93 18.54 42.15 0.78 -5.15 16 6 C 0.52 5.72 6.95 -10.99 -0.08 5.65 16 7 O -0.53 -8.25 15.48 5.55 0.09 -8.17 16 8 N -0.60 -5.67 2.98 -173.02 -0.52 -6.19 16 9 C 0.11 1.17 6.41 -3.93 -0.03 1.15 16 10 C -0.13 -1.56 5.16 -26.83 -0.14 -1.70 16 11 C -0.08 -0.97 1.57 -90.58 -0.14 -1.11 16 12 C -0.07 -1.05 1.58 -91.08 -0.14 -1.20 16 13 H 0.08 1.66 6.82 -51.93 -0.35 1.31 16 14 C -0.11 -1.82 5.10 -28.40 -0.14 -1.97 16 15 C -0.13 -2.61 5.02 -30.18 -0.15 -2.76 16 16 C 0.17 3.73 5.25 -5.20 -0.03 3.70 16 17 N -0.59 -13.67 2.61 -175.11 -0.46 -14.12 16 18 C -0.25 -6.38 9.63 -15.06 -0.15 -6.52 16 19 H 0.07 1.69 7.89 -52.48 -0.41 1.27 16 20 C 0.00 0.04 4.91 -17.43 -0.09 -0.05 16 21 N -0.90 -24.14 9.43 55.49 0.52 -23.62 16 22 Si 0.90 21.06 29.60 -169.99 -5.03 16.03 16 23 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 24 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 25 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 26 C 0.16 3.09 5.18 -4.68 -0.02 3.06 16 27 C -0.14 -2.19 4.50 -24.78 -0.11 -2.30 16 28 C -0.13 -1.31 4.95 -26.61 -0.13 -1.44 16 29 C 0.10 0.69 5.10 -3.71 -0.02 0.67 16 30 H 0.08 0.24 8.14 -51.92 -0.42 -0.18 16 31 H 0.09 0.25 6.24 -51.93 -0.32 -0.07 16 32 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 33 H 0.09 1.08 7.00 -51.93 -0.36 0.72 16 34 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 35 H 0.08 0.97 6.32 -51.93 -0.33 0.64 16 36 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 37 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 38 H 0.05 0.70 5.92 -51.93 -0.31 0.39 16 39 H 0.05 0.87 6.29 -51.93 -0.33 0.54 16 40 H 0.10 2.34 5.35 -51.93 -0.28 2.06 16 41 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 42 H 0.09 2.25 5.99 -51.93 -0.31 1.94 16 43 H 0.00 0.05 8.12 -51.93 -0.42 -0.37 16 44 H 0.25 6.69 8.31 -40.82 -0.34 6.35 16 45 H 0.03 0.55 7.99 -51.93 -0.41 0.14 16 46 H 0.03 0.47 6.88 -51.92 -0.36 0.11 16 47 H 0.04 0.58 7.91 -51.93 -0.41 0.17 16 48 H 0.05 0.83 7.60 -51.93 -0.39 0.44 16 49 H 0.08 0.78 6.64 -51.93 -0.34 0.44 16 50 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 51 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 52 H 0.08 0.36 5.02 -51.93 -0.26 0.10 16 LS Contribution 384.62 15.07 5.80 5.80 Total: -1.00 -31.37 384.62 -8.85 -40.21 By element: Atomic # 1 Polarization: 6.91 SS G_CDS: -8.49 Total: -1.58 kcal Atomic # 6 Polarization: -1.68 SS G_CDS: -1.54 Total: -3.22 kcal Atomic # 7 Polarization: -49.40 SS G_CDS: 0.33 Total: -49.07 kcal Atomic # 8 Polarization: -8.25 SS G_CDS: 0.09 Total: -8.17 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -5.03 Total: 16.03 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -31.37 -8.85 -40.21 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001075448416.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.378 kcal (2) G-P(sol) polarization free energy of solvation -31.367 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.011 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.847 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.215 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.163 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds