Wall clock time and date at job start Tue Mar 31 2020 17:53:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08994 * 109.47277 * 2 1 4 4 C 1.47202 * 109.47064 * 120.00704 * 2 1 3 5 5 N 2.60802 * 109.47087 * 120.00607 * 2 1 3 6 6 C 1.50703 * 109.46443 * 240.00439 * 2 1 3 7 7 O 1.21284 * 119.99709 * 250.11118 * 6 2 1 8 8 N 1.34771 * 120.00198 * 70.11756 * 6 2 1 9 9 C 1.46926 * 120.63073 * 182.69566 * 8 6 2 10 10 C 1.52771 * 109.00601 * 233.58175 * 9 8 6 11 11 C 1.53045 * 109.37849 * 305.58447 * 10 9 8 12 12 C 1.53002 * 109.45502 * 181.26323 * 11 10 9 13 13 H 1.08995 * 109.20270 * 306.70799 * 12 11 10 14 14 C 1.50120 * 109.20927 * 66.07125 * 12 11 10 15 15 C 1.52528 * 105.41798 * 218.02321 * 14 12 11 16 16 C 1.46244 * 114.27789 * 270.60161 * 15 14 12 17 17 N 1.50162 * 107.53514 * 58.40363 * 16 15 14 18 18 C 1.36932 * 120.53687 * 109.56550 * 17 16 15 19 19 H 1.08005 * 120.00032 * 157.61999 * 18 17 16 20 20 C 1.38813 * 120.00347 * 337.62463 * 18 17 16 21 21 N 1.31618 * 119.99627 * 339.98242 * 20 18 17 22 22 Si 1.86797 * 120.00091 * 159.98168 * 20 18 17 23 23 H 1.48505 * 109.47205 * 90.00311 * 22 20 18 24 24 H 1.48504 * 109.47084 * 210.00080 * 22 20 18 25 25 H 1.48498 * 109.47304 * 329.99896 * 22 20 18 26 26 C 1.43434 * 118.92650 * 289.58820 * 17 16 15 27 27 C 1.54839 * 109.20695 * 187.35258 * 12 11 10 28 28 C 1.53038 * 109.53743 * 61.24341 * 11 10 9 29 29 C 1.46927 * 120.63183 * 2.96662 * 8 6 2 30 30 H 1.09009 * 109.46764 * 302.26155 * 1 2 3 31 31 H 1.08995 * 109.47264 * 62.25389 * 1 2 3 32 32 H 1.08998 * 109.47273 * 182.26142 * 1 2 3 33 33 H 1.09005 * 109.58430 * 353.40722 * 9 8 6 34 34 H 1.08995 * 109.59503 * 113.84067 * 9 8 6 35 35 H 1.08999 * 109.56258 * 185.55273 * 10 9 8 36 36 H 1.08999 * 109.38660 * 65.50950 * 10 9 8 37 37 H 1.09002 * 109.44658 * 301.22663 * 11 10 9 38 38 H 1.08996 * 110.25157 * 337.00043 * 14 12 11 39 39 H 1.09002 * 110.24763 * 98.90845 * 14 12 11 40 40 H 1.09003 * 108.52445 * 31.84043 * 15 14 12 41 41 H 1.09001 * 108.52238 * 149.35986 * 15 14 12 42 42 H 1.09000 * 109.84298 * 177.91514 * 16 15 14 43 43 H 1.09002 * 109.84304 * 298.89638 * 16 15 14 44 44 H 0.97003 * 119.99810 * 179.97438 * 21 20 18 45 45 H 1.08997 * 108.15972 * 213.28780 * 26 17 16 46 46 H 1.09010 * 108.15761 * 330.06311 * 26 17 16 47 47 H 1.08998 * 109.35882 * 320.99334 * 27 12 11 48 48 H 1.09002 * 109.36238 * 80.58300 * 27 12 11 49 49 H 1.08999 * 109.49466 * 178.67967 * 28 11 10 50 50 H 1.08995 * 109.50194 * 58.58484 * 28 11 10 51 51 H 1.09000 * 109.58971 * 246.15965 * 29 8 6 52 52 H 1.08998 * 109.58368 * 6.58683 * 29 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0207 -0.6941 1.2018 5 7 2.3993 -1.2297 2.1293 6 6 2.0322 -0.7104 -1.2306 7 8 2.5712 -1.7921 -1.1288 8 7 1.8825 -0.1436 -2.4441 9 6 2.3135 -0.8496 -3.6584 10 6 3.2538 0.0553 -4.4527 11 6 2.5657 1.3967 -4.7160 12 6 3.4937 2.2928 -5.5385 13 1 4.4606 2.3610 -5.0400 14 6 3.6817 1.6910 -6.9009 15 6 5.1425 1.9452 -7.2585 16 6 5.3811 3.2132 -7.9470 17 7 4.8890 4.3137 -7.0517 18 6 5.7740 5.1577 -6.4357 19 1 5.4486 6.1324 -6.1030 20 6 7.0896 4.7608 -6.2390 21 7 7.4026 3.4827 -6.2679 22 14 8.4155 6.0405 -5.9332 23 1 8.5343 6.2915 -4.4743 24 1 9.7132 5.5438 -6.4572 25 1 8.0533 7.3037 -6.6249 26 6 3.4769 4.4663 -6.8518 27 6 2.8739 3.7079 -5.6437 28 6 2.2474 2.0788 -3.3835 29 6 1.2906 1.1946 -2.5775 30 1 -0.3633 0.5486 0.8691 31 1 -0.3633 0.4784 -0.9094 32 1 -0.3634 -1.0268 0.0405 33 1 2.8366 -1.7653 -3.3824 34 1 1.4435 -1.0928 -4.2681 35 1 3.5012 -0.4192 -5.4023 36 1 4.1663 0.2207 -3.8800 37 1 1.6408 1.2280 -5.2677 38 1 3.4814 0.6200 -6.8711 39 1 3.0244 2.1771 -7.6219 40 1 5.7308 1.9334 -6.3409 41 1 5.4887 1.1334 -7.8982 42 1 6.4477 3.3375 -8.1343 43 1 4.8345 3.2309 -8.8899 44 1 8.3220 3.2054 -6.1308 45 1 3.2641 5.5280 -6.7273 46 1 2.9673 4.1232 -7.7523 47 1 1.7951 3.6211 -5.7729 48 1 3.0828 4.2628 -4.7290 49 1 1.7785 3.0445 -3.5721 50 1 3.1690 2.2251 -2.8203 51 1 0.3353 1.1214 -3.0973 52 1 1.1388 1.6271 -1.5887 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001075448416.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:53:28 Heat of formation + Delta-G solvation = -8.547038 kcal Electronic energy + Delta-G solvation = -30235.345022 eV Core-core repulsion = 26427.498328 eV Total energy + Delta-G solvation = -3807.846694 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 333.216 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.61334 -40.15288 -38.39617 -37.61963 -35.93357 -34.58789 -33.52088 -33.25984 -31.81567 -31.40399 -28.18635 -26.80217 -26.03519 -25.49159 -23.98053 -23.70370 -22.03835 -21.55907 -20.35584 -20.13730 -18.60415 -18.49352 -18.22016 -16.90728 -16.80765 -16.32570 -16.11004 -15.66243 -15.38305 -15.22746 -15.09085 -14.97784 -14.85479 -14.54038 -14.17401 -14.01614 -13.90932 -13.72335 -13.65785 -13.28562 -13.24903 -13.19519 -13.04787 -12.86654 -12.71572 -12.53413 -12.44694 -12.35196 -12.24699 -12.03303 -11.91415 -11.76116 -11.57202 -11.24161 -11.14275 -10.92086 -10.88567 -10.69136 -10.54002 -10.35089 -9.62138 -8.57623 -7.77697 -5.15688 1.34993 1.45938 1.47205 1.49999 1.57163 1.68460 2.15200 2.56907 2.76433 3.35278 3.41731 3.72097 3.88942 3.90314 3.94840 3.99337 4.09942 4.22986 4.33624 4.42661 4.49042 4.54726 4.65431 4.66630 4.78851 4.82874 4.83633 4.85763 4.88477 4.92656 4.97569 4.98266 5.04909 5.12706 5.17697 5.24509 5.28885 5.33415 5.37205 5.44891 5.50809 5.55400 5.59474 5.65701 5.71333 5.81340 5.89980 6.01441 6.28512 6.29915 6.47500 6.47690 7.02921 7.24024 8.00149 8.49930 9.25986 Molecular weight = 333.22amu Principal moments of inertia in cm(-1) A = 0.014957 B = 0.002942 C = 0.002753 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1871.529211 B = 9515.609713 C =10169.748429 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.008 4.008 3 H 0.176 0.824 4 C 0.242 3.758 5 N -0.476 5.476 6 C 0.519 3.481 7 O -0.590 6.590 8 N -0.596 5.596 9 C 0.117 3.883 10 C -0.125 4.125 11 C -0.074 4.074 12 C -0.058 4.058 13 H 0.025 0.975 14 C -0.100 4.100 15 C -0.121 4.121 16 C 0.168 3.832 17 N -0.601 5.601 18 C -0.251 4.251 19 H 0.061 0.939 20 C -0.046 4.046 21 N -0.916 5.916 22 Si 0.950 3.050 23 H -0.291 1.291 24 H -0.298 1.298 25 H -0.276 1.276 26 C 0.147 3.853 27 C -0.124 4.124 28 C -0.132 4.132 29 C 0.099 3.901 30 H 0.101 0.899 31 H 0.113 0.887 32 H 0.059 0.941 33 H 0.067 0.933 34 H 0.097 0.903 35 H 0.077 0.923 36 H 0.031 0.969 37 H 0.094 0.906 38 H 0.069 0.931 39 H 0.062 0.938 40 H 0.060 0.940 41 H 0.023 0.977 42 H 0.050 0.950 43 H 0.018 0.982 44 H 0.243 0.757 45 H 0.023 0.977 46 H 0.041 0.959 47 H 0.084 0.916 48 H 0.038 0.962 49 H 0.096 0.904 50 H 0.041 0.959 51 H 0.110 0.890 52 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.868 -3.545 4.593 21.659 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.032 4.032 3 H 0.193 0.807 4 C -0.077 4.077 5 N -0.152 5.152 6 C 0.306 3.694 7 O -0.471 6.471 8 N -0.327 5.327 9 C -0.005 4.005 10 C -0.163 4.163 11 C -0.092 4.092 12 C -0.077 4.077 13 H 0.044 0.956 14 C -0.137 4.137 15 C -0.160 4.160 16 C 0.044 3.956 17 N -0.323 5.323 18 C -0.382 4.382 19 H 0.079 0.921 20 C -0.241 4.241 21 N -0.563 5.563 22 Si 0.780 3.220 23 H -0.218 1.218 24 H -0.225 1.225 25 H -0.201 1.201 26 C 0.020 3.980 27 C -0.164 4.164 28 C -0.170 4.170 29 C -0.022 4.022 30 H 0.120 0.880 31 H 0.132 0.868 32 H 0.078 0.922 33 H 0.085 0.915 34 H 0.115 0.885 35 H 0.095 0.905 36 H 0.050 0.950 37 H 0.112 0.888 38 H 0.088 0.912 39 H 0.081 0.919 40 H 0.079 0.921 41 H 0.042 0.958 42 H 0.069 0.931 43 H 0.037 0.963 44 H 0.052 0.948 45 H 0.042 0.958 46 H 0.059 0.941 47 H 0.103 0.897 48 H 0.057 0.943 49 H 0.114 0.886 50 H 0.060 0.940 51 H 0.128 0.872 52 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -19.861 -4.946 6.029 21.337 hybrid contribution 1.994 0.605 -0.155 2.089 sum -17.867 -4.341 5.874 19.303 Atomic orbital electron populations 1.21964 0.86342 1.04493 1.07043 1.19216 1.01133 1.00709 0.82182 0.80683 1.28891 0.92231 0.92582 0.93947 1.81193 1.09753 1.09854 1.14412 1.20502 0.78406 0.85323 0.85142 1.90757 1.45495 1.24178 1.86649 1.48137 1.60340 1.19144 1.05076 1.21527 0.99024 0.94933 0.85016 1.21874 0.97733 0.96737 0.99954 1.21247 0.98659 0.93195 0.96123 1.20873 0.97337 0.94419 0.95085 0.95606 1.21071 0.95610 0.99852 0.97184 1.20798 0.97043 0.96502 1.01612 1.20043 0.98152 0.87507 0.89872 1.44335 1.01382 1.35310 1.51311 1.19369 0.91466 0.95102 1.32238 0.92086 1.25434 1.00164 0.96818 1.01704 1.70157 1.17137 1.14046 1.54938 0.85550 0.79481 0.79730 0.77281 1.21784 1.22473 1.20141 1.20591 0.84205 0.96935 0.96272 1.22811 0.99358 0.95313 0.98938 1.22032 0.99544 0.99856 0.95572 1.22340 0.96934 0.79485 1.03398 0.87985 0.86799 0.92206 0.91493 0.88459 0.90459 0.94981 0.88803 0.91206 0.91911 0.92100 0.95844 0.93140 0.96347 0.94811 0.95816 0.94052 0.89730 0.94288 0.88578 0.94039 0.87240 0.86315 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.64 8.81 71.98 0.63 0.00 16 2 C -0.01 -0.10 2.25 -13.34 -0.03 -0.13 16 3 H 0.18 0.84 7.00 -2.39 -0.02 0.83 16 4 C 0.24 5.30 13.91 89.44 1.24 6.55 16 5 N -0.48 -13.84 18.54 20.01 0.37 -13.47 16 6 C 0.52 10.42 6.95 87.66 0.61 11.02 16 7 O -0.59 -18.49 15.48 -3.04 -0.05 -18.54 16 8 N -0.60 -9.47 2.98 -819.72 -2.44 -11.91 16 9 C 0.12 2.21 6.41 86.22 0.55 2.76 16 10 C -0.12 -2.85 5.16 30.53 0.16 -2.69 16 11 C -0.07 -1.51 1.57 -10.77 -0.02 -1.53 16 12 C -0.06 -1.78 1.58 -11.09 -0.02 -1.79 16 13 H 0.03 1.08 6.82 -2.39 -0.02 1.07 16 14 C -0.10 -3.12 5.10 29.51 0.15 -2.97 16 15 C -0.12 -4.99 5.02 28.36 0.14 -4.85 16 16 C 0.17 7.69 5.25 83.58 0.44 8.13 16 17 N -0.60 -28.17 2.61 -707.91 -1.84 -30.02 16 18 C -0.25 -13.27 9.63 84.03 0.81 -12.46 16 19 H 0.06 3.21 7.89 -2.91 -0.02 3.18 16 20 C -0.05 -2.47 4.91 84.86 0.42 -2.05 16 21 N -0.92 -51.56 9.43 21.65 0.20 -51.36 16 22 Si 0.95 44.46 29.60 68.60 2.03 46.49 16 23 H -0.29 -13.54 7.11 99.48 0.71 -12.83 16 24 H -0.30 -14.18 7.11 99.48 0.71 -13.48 16 25 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 26 C 0.15 5.49 5.18 87.58 0.45 5.94 16 27 C -0.12 -3.66 4.50 31.86 0.14 -3.52 16 28 C -0.13 -2.14 4.95 30.67 0.15 -1.99 16 29 C 0.10 0.84 5.10 86.36 0.44 1.28 16 30 H 0.10 0.11 8.14 -2.38 -0.02 0.09 16 31 H 0.11 -0.07 6.24 -2.39 -0.01 -0.09 16 32 H 0.06 0.47 8.14 -2.39 -0.02 0.45 16 33 H 0.07 1.61 7.00 -2.38 -0.02 1.59 16 34 H 0.10 1.32 8.14 -2.39 -0.02 1.30 16 35 H 0.08 1.78 6.32 -2.39 -0.02 1.77 16 36 H 0.03 0.95 8.14 -2.39 -0.02 0.93 16 37 H 0.09 1.48 8.14 -2.39 -0.02 1.46 16 38 H 0.07 1.87 5.92 -2.39 -0.01 1.86 16 39 H 0.06 1.86 6.29 -2.39 -0.02 1.84 16 40 H 0.06 3.03 5.35 -2.39 -0.01 3.02 16 41 H 0.02 0.91 8.14 -2.39 -0.02 0.89 16 42 H 0.05 2.69 5.99 -2.39 -0.01 2.67 16 43 H 0.02 0.77 8.12 -2.39 -0.02 0.75 16 44 H 0.24 13.59 8.31 -92.71 -0.77 12.82 16 45 H 0.02 0.89 7.99 -2.39 -0.02 0.87 16 46 H 0.04 1.40 6.88 -2.38 -0.02 1.38 16 47 H 0.08 1.84 7.91 -2.39 -0.02 1.82 16 48 H 0.04 1.23 7.60 -2.39 -0.02 1.22 16 49 H 0.10 1.35 6.64 -2.39 -0.02 1.33 16 50 H 0.04 0.92 8.14 -2.39 -0.02 0.90 16 51 H 0.11 0.34 8.14 -2.39 -0.02 0.32 16 52 H 0.12 0.25 5.02 -2.39 -0.01 0.23 16 Total: -1.00 -76.21 384.62 5.47 -70.74 By element: Atomic # 1 Polarization: 5.44 SS G_CDS: 0.92 Total: 6.36 kcal Atomic # 6 Polarization: -4.58 SS G_CDS: 6.28 Total: 1.70 kcal Atomic # 7 Polarization: -103.04 SS G_CDS: -3.71 Total: -106.75 kcal Atomic # 8 Polarization: -18.49 SS G_CDS: -0.05 Total: -18.54 kcal Atomic # 14 Polarization: 44.46 SS G_CDS: 2.03 Total: 46.49 kcal Total: -76.21 5.47 -70.74 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001075448416.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.190 kcal (2) G-P(sol) polarization free energy of solvation -76.205 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.015 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.468 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.737 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.547 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds