Wall clock time and date at job start Tue Mar 31 2020 17:53:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08993 * 109.47120 * 2 1 4 4 C 1.47206 * 109.46879 * 119.99344 * 2 1 3 5 5 N 2.60803 * 109.46802 * 119.99578 * 2 1 3 6 6 C 1.50697 * 109.47302 * 239.99209 * 2 1 3 7 7 O 1.21281 * 120.00197 * 337.05282 * 6 2 1 8 8 N 1.34777 * 119.99971 * 157.04813 * 6 2 1 9 9 C 1.46925 * 120.63348 * 175.05061 * 8 6 2 10 10 C 1.53191 * 108.77527 * 233.63001 * 9 8 6 11 11 C 1.53039 * 109.31487 * 305.36552 * 10 9 8 12 12 C 1.52994 * 109.46227 * 181.38705 * 11 10 9 13 13 H 1.09005 * 109.50663 * 298.65670 * 12 11 10 14 14 C 1.52564 * 109.49472 * 178.60050 * 12 11 10 15 15 C 1.47087 * 114.33117 * 155.02283 * 14 12 11 16 16 C 1.54865 * 110.32513 * 62.79995 * 15 14 12 17 17 N 1.44585 * 109.59751 * 288.73519 * 16 15 14 18 18 C 1.36935 * 118.64608 * 270.70272 * 17 16 15 19 19 H 1.08007 * 119.99510 * 35.05446 * 18 17 16 20 20 C 1.38811 * 120.00000 * 215.05894 * 18 17 16 21 21 N 1.31617 * 119.99933 * 359.00073 * 20 18 17 22 22 Si 1.86799 * 119.99710 * 178.99953 * 20 18 17 23 23 H 1.48504 * 109.46647 * 179.97438 * 22 20 18 24 24 H 1.48498 * 109.47388 * 300.00170 * 22 20 18 25 25 H 1.48500 * 109.47142 * 60.00195 * 22 20 18 26 26 C 1.47601 * 122.70914 * 90.98574 * 17 16 15 27 27 C 1.50885 * 109.48903 * 58.70845 * 12 11 10 28 28 C 1.53037 * 109.53885 * 61.36277 * 11 10 9 29 29 C 1.46935 * 120.62911 * 355.07509 * 8 6 2 30 30 H 1.09000 * 109.47242 * 305.00243 * 1 2 3 31 31 H 1.08996 * 109.46933 * 65.00455 * 1 2 3 32 32 H 1.09003 * 109.47049 * 184.99906 * 1 2 3 33 33 H 1.09004 * 109.58151 * 113.84212 * 9 8 6 34 34 H 1.08997 * 109.58585 * 353.42190 * 9 8 6 35 35 H 1.08998 * 109.49588 * 185.41194 * 10 9 8 36 36 H 1.09004 * 109.52253 * 65.33358 * 10 9 8 37 37 H 1.09002 * 109.45991 * 301.36021 * 11 10 9 38 38 H 1.08996 * 108.51190 * 33.76470 * 14 12 11 39 39 H 1.09005 * 108.38982 * 276.19168 * 14 12 11 40 40 H 1.09002 * 109.32630 * 302.53984 * 15 14 12 41 41 H 1.08997 * 109.19282 * 182.97291 * 15 14 12 42 42 H 1.08992 * 109.45135 * 168.69937 * 16 15 14 43 43 H 1.09002 * 109.44775 * 48.77321 * 16 15 14 44 44 H 0.97001 * 119.99355 * 180.02562 * 21 20 18 45 45 H 1.09002 * 108.95229 * 78.29530 * 26 17 16 46 46 H 1.09005 * 108.94813 * 196.92090 * 26 17 16 47 47 H 1.08998 * 109.36795 * 332.05309 * 27 12 11 48 48 H 1.09003 * 109.36180 * 91.79438 * 27 12 11 49 49 H 1.08998 * 109.49548 * 58.58855 * 28 11 10 50 50 H 1.09000 * 109.49914 * 178.68354 * 28 11 10 51 51 H 1.09003 * 109.58439 * 246.15833 * 29 8 6 52 52 H 1.09005 * 109.58309 * 6.57971 * 29 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0206 -0.6938 1.2020 5 7 2.3992 -1.2293 2.1296 6 6 2.0324 -0.7106 -1.2303 7 8 1.3227 -1.5124 -1.7998 8 7 3.2703 -0.4550 -1.6979 9 6 3.8150 -1.2165 -2.8302 10 6 5.1695 -1.8047 -2.4227 11 6 6.0806 -0.6803 -1.9252 12 6 7.4462 -1.2592 -1.5499 13 1 7.3254 -1.9846 -0.7453 14 6 8.3663 -0.1338 -1.0866 15 6 9.4452 -0.5655 -0.1848 16 6 10.3879 -1.5573 -0.9101 17 7 9.7104 -2.8206 -1.0987 18 6 9.8061 -3.7699 -0.1165 19 1 9.8429 -3.4717 0.9209 20 6 9.8559 -5.1154 -0.4542 21 7 9.7913 -5.4797 -1.7173 22 14 10.0146 -6.4089 0.8841 23 1 10.0454 -7.7590 0.2663 24 1 11.2700 -6.1832 1.6444 25 1 8.8539 -6.3130 1.8054 26 6 8.9248 -3.1314 -2.3090 27 6 8.0530 -1.9382 -2.7529 28 6 5.4524 -0.0182 -0.6967 29 6 4.1012 0.5903 -1.0845 30 1 -0.3634 0.5895 0.8418 31 1 -0.3633 0.4342 -0.9314 32 1 -0.3633 -1.0238 0.0896 33 1 3.9466 -0.5545 -3.6861 34 1 3.1299 -2.0231 -3.0913 35 1 5.6286 -2.2911 -3.2834 36 1 5.0248 -2.5350 -1.6265 37 1 6.2051 0.0620 -2.7136 38 1 7.7647 0.6157 -0.5725 39 1 8.8146 0.3280 -1.9664 40 1 9.0119 -1.0528 0.6887 41 1 10.0157 0.3065 0.1345 42 1 11.2837 -1.7122 -0.3088 43 1 10.6687 -1.1476 -1.8803 44 1 9.8257 -6.4200 -1.9531 45 1 9.6080 -3.3948 -3.1165 46 1 8.2785 -3.9845 -2.1021 47 1 7.2569 -2.2953 -3.4062 48 1 8.6735 -1.2252 -3.2957 49 1 5.3047 -0.7650 0.0834 50 1 6.1129 0.7670 -0.3289 51 1 4.2561 1.3995 -1.7981 52 1 3.6048 0.9758 -0.1938 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001075448418.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:53:37 Heat of formation + Delta-G solvation = 3.849679 kcal Electronic energy + Delta-G solvation = -30307.275308 eV Core-core repulsion = 26499.966176 eV Total energy + Delta-G solvation = -3807.309132 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 333.216 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -40.79680 -38.99156 -37.14134 -36.83832 -34.51831 -33.58574 -32.71135 -31.44431 -30.71196 -30.39726 -26.79091 -25.88840 -24.85899 -23.96511 -23.00161 -22.57890 -21.06199 -19.71075 -19.57013 -19.01779 -18.01558 -17.71820 -16.50703 -16.15332 -15.40860 -15.08765 -14.83026 -14.57434 -14.36313 -14.16428 -14.01301 -13.80893 -13.52740 -13.43817 -13.21172 -13.11147 -12.89709 -12.74643 -12.67343 -12.41187 -12.26272 -12.17103 -11.76032 -11.68031 -11.42892 -11.33279 -11.16648 -10.94875 -10.83605 -10.76588 -10.61570 -10.35204 -10.08103 -10.02338 -9.85193 -9.75575 -9.60366 -9.53585 -9.28955 -8.85092 -8.35485 -6.45863 -5.74173 -3.26753 1.92955 2.40288 2.42585 2.80559 3.40063 3.45082 3.46387 3.56927 4.03207 4.38961 4.43204 4.52439 4.67099 4.76911 4.82860 4.99065 5.15835 5.20470 5.25320 5.31007 5.34788 5.42302 5.47241 5.56461 5.61679 5.68123 5.72502 5.73181 5.80298 5.85599 6.00824 6.10376 6.14635 6.20851 6.30553 6.36932 6.39216 6.45401 6.59149 6.69397 6.77704 6.83616 6.90430 6.99985 7.04888 7.06300 7.17157 7.23218 7.55706 7.77171 7.82807 7.88712 8.58839 9.33341 9.96946 10.45535 11.32043 Molecular weight = 333.22amu Principal moments of inertia in cm(-1) A = 0.013050 B = 0.003261 C = 0.003033 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2145.143295 B = 8583.507968 C = 9229.749875 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.013 4.013 3 H 0.135 0.865 4 C 0.205 3.795 5 N -0.400 5.400 6 C 0.524 3.476 7 O -0.525 6.525 8 N -0.603 5.603 9 C 0.113 3.887 10 C -0.134 4.134 11 C -0.079 4.079 12 C -0.067 4.067 13 H 0.080 0.920 14 C -0.098 4.098 15 C -0.146 4.146 16 C 0.159 3.841 17 N -0.590 5.590 18 C -0.259 4.259 19 H 0.059 0.941 20 C 0.012 3.988 21 N -0.905 5.905 22 Si 0.899 3.101 23 H -0.290 1.290 24 H -0.283 1.283 25 H -0.284 1.284 26 C 0.181 3.819 27 C -0.142 4.142 28 C -0.134 4.134 29 C 0.102 3.898 30 H 0.073 0.927 31 H 0.081 0.919 32 H 0.075 0.925 33 H 0.070 0.930 34 H 0.092 0.908 35 H 0.087 0.913 36 H 0.068 0.932 37 H 0.066 0.934 38 H 0.043 0.957 39 H 0.044 0.956 40 H 0.057 0.943 41 H 0.042 0.958 42 H 0.041 0.959 43 H 0.029 0.971 44 H 0.253 0.747 45 H 0.020 0.980 46 H 0.075 0.925 47 H 0.056 0.944 48 H 0.041 0.959 49 H 0.067 0.933 50 H 0.082 0.918 51 H 0.077 0.923 52 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.828 17.330 -2.147 22.909 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.038 4.038 3 H 0.152 0.848 4 C -0.114 4.114 5 N -0.076 5.076 6 C 0.308 3.692 7 O -0.400 6.400 8 N -0.336 5.336 9 C -0.009 4.009 10 C -0.171 4.171 11 C -0.098 4.098 12 C -0.086 4.086 13 H 0.099 0.901 14 C -0.135 4.135 15 C -0.186 4.186 16 C 0.031 3.969 17 N -0.312 5.312 18 C -0.389 4.389 19 H 0.077 0.923 20 C -0.187 4.187 21 N -0.549 5.549 22 Si 0.729 3.271 23 H -0.216 1.216 24 H -0.209 1.209 25 H -0.210 1.210 26 C 0.057 3.943 27 C -0.181 4.181 28 C -0.172 4.172 29 C -0.021 4.021 30 H 0.092 0.908 31 H 0.100 0.900 32 H 0.094 0.906 33 H 0.088 0.912 34 H 0.110 0.890 35 H 0.105 0.895 36 H 0.087 0.913 37 H 0.085 0.915 38 H 0.062 0.938 39 H 0.063 0.937 40 H 0.075 0.925 41 H 0.061 0.939 42 H 0.059 0.941 43 H 0.047 0.953 44 H 0.064 0.936 45 H 0.038 0.962 46 H 0.093 0.907 47 H 0.074 0.926 48 H 0.060 0.940 49 H 0.085 0.915 50 H 0.100 0.900 51 H 0.095 0.905 52 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -14.617 15.903 -1.177 21.633 hybrid contribution 0.155 -0.460 0.416 0.640 sum -14.462 15.443 -0.761 21.172 Atomic orbital electron populations 1.21662 0.89196 1.04510 1.03732 1.18978 0.99373 0.99766 0.85646 0.84754 1.28303 0.94229 0.94577 0.94338 1.81307 1.07438 1.07643 1.11170 1.19947 0.81669 0.82680 0.84876 1.90738 1.55483 1.34710 1.59109 1.48180 1.14323 1.37136 1.33925 1.21744 0.95794 0.96097 0.87273 1.22102 0.93815 0.98489 1.02739 1.21204 0.95399 0.96761 0.96442 1.20540 0.91631 0.97133 0.99298 0.90125 1.20438 0.96855 0.97263 0.98981 1.21474 0.98350 0.99164 0.99642 1.20675 0.92965 0.86803 0.96436 1.43567 1.55673 1.12390 1.19543 1.19095 1.45627 0.86443 0.87772 0.92306 1.25284 0.99683 0.97972 0.95767 1.69981 1.54108 1.15596 1.15217 0.86435 0.78232 0.81032 0.81425 1.21617 1.20884 1.21021 1.21093 0.92437 0.92945 0.87869 1.22320 0.99224 0.99956 0.96620 1.22088 0.94851 1.01142 0.99120 1.21946 0.92188 0.89889 0.98074 0.90802 0.89994 0.90643 0.91203 0.89008 0.89513 0.91341 0.91547 0.93827 0.93699 0.92466 0.93895 0.94062 0.95263 0.93646 0.96155 0.90710 0.92584 0.94044 0.91452 0.89963 0.90520 0.90206 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.78 8.57 37.16 0.32 -0.47 16 2 C -0.01 -0.10 2.29 -94.56 -0.22 -0.31 16 3 H 0.14 0.49 6.38 -51.93 -0.33 0.15 16 4 C 0.20 2.19 14.32 -20.76 -0.30 1.90 16 5 N -0.40 -5.59 18.54 42.15 0.78 -4.81 16 6 C 0.52 5.54 6.78 -10.99 -0.07 5.47 16 7 O -0.52 -7.33 15.60 5.56 0.09 -7.24 16 8 N -0.60 -5.98 2.97 -172.76 -0.51 -6.49 16 9 C 0.11 1.20 6.42 -3.71 -0.02 1.18 16 10 C -0.13 -1.67 5.10 -26.61 -0.14 -1.81 16 11 C -0.08 -0.97 1.71 -90.58 -0.15 -1.12 16 12 C -0.07 -1.08 1.40 -91.91 -0.13 -1.21 16 13 H 0.08 1.61 7.49 -51.93 -0.39 1.23 16 14 C -0.10 -1.49 4.57 -29.79 -0.14 -1.62 16 15 C -0.15 -2.54 5.74 -28.59 -0.16 -2.71 16 16 C 0.16 3.32 5.65 -4.08 -0.02 3.30 16 17 N -0.59 -14.42 2.26 -171.87 -0.39 -14.81 16 18 C -0.26 -7.06 9.37 -15.06 -0.14 -7.21 16 19 H 0.06 1.60 7.83 -52.48 -0.41 1.19 16 20 C 0.01 0.33 5.21 -17.43 -0.09 0.24 16 21 N -0.91 -26.10 10.69 55.49 0.59 -25.51 16 22 Si 0.90 22.03 29.55 -169.99 -5.02 17.01 16 23 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 24 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 25 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 26 C 0.18 4.24 4.66 -2.76 -0.01 4.23 16 27 C -0.14 -2.53 5.11 -27.11 -0.14 -2.67 16 28 C -0.13 -1.42 5.13 -26.62 -0.14 -1.56 16 29 C 0.10 0.79 6.25 -3.71 -0.02 0.77 16 30 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16 31 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.07 0.58 8.04 -51.93 -0.42 0.16 16 33 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 34 H 0.09 1.10 7.04 -51.93 -0.37 0.73 16 35 H 0.09 1.11 5.89 -51.93 -0.31 0.80 16 36 H 0.07 1.03 8.14 -51.93 -0.42 0.60 16 37 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 38 H 0.04 0.57 5.53 -51.93 -0.29 0.28 16 39 H 0.04 0.67 7.35 -51.93 -0.38 0.28 16 40 H 0.06 1.11 8.14 -51.93 -0.42 0.68 16 41 H 0.04 0.66 8.14 -51.93 -0.42 0.23 16 42 H 0.04 0.89 7.99 -51.93 -0.41 0.47 16 43 H 0.03 0.58 8.06 -51.93 -0.42 0.17 16 44 H 0.25 7.14 8.31 -40.82 -0.34 6.80 16 45 H 0.02 0.52 7.98 -51.93 -0.41 0.11 16 46 H 0.07 1.98 6.46 -51.93 -0.34 1.64 16 47 H 0.06 0.91 5.38 -51.93 -0.28 0.63 16 48 H 0.04 0.71 7.31 -51.93 -0.38 0.33 16 49 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 50 H 0.08 0.81 5.99 -51.93 -0.31 0.50 16 51 H 0.08 0.47 8.14 -51.93 -0.42 0.04 16 52 H 0.08 0.46 5.30 -51.93 -0.28 0.19 16 LS Contribution 390.81 15.07 5.89 5.89 Total: -1.00 -32.43 390.81 -8.81 -41.24 By element: Atomic # 1 Polarization: 6.97 SS G_CDS: -8.66 Total: -1.69 kcal Atomic # 6 Polarization: -2.02 SS G_CDS: -1.58 Total: -3.60 kcal Atomic # 7 Polarization: -52.09 SS G_CDS: 0.47 Total: -51.61 kcal Atomic # 8 Polarization: -7.33 SS G_CDS: 0.09 Total: -7.24 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -5.02 Total: 17.01 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -32.43 -8.81 -41.24 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001075448418.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.092 kcal (2) G-P(sol) polarization free energy of solvation -32.432 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.660 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.810 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.242 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.850 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds