Wall clock time and date at job start Tue Mar 31 2020 17:53:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08993 * 109.47120 * 2 1 4 4 C 1.47206 * 109.46879 * 119.99344 * 2 1 3 5 5 N 2.60803 * 109.46802 * 119.99578 * 2 1 3 6 6 C 1.50697 * 109.47302 * 239.99209 * 2 1 3 7 7 O 1.21281 * 120.00197 * 337.05282 * 6 2 1 8 8 N 1.34777 * 119.99971 * 157.04813 * 6 2 1 9 9 C 1.46925 * 120.63348 * 175.05061 * 8 6 2 10 10 C 1.53191 * 108.77527 * 233.63001 * 9 8 6 11 11 C 1.53039 * 109.31487 * 305.36552 * 10 9 8 12 12 C 1.52994 * 109.46227 * 181.38705 * 11 10 9 13 13 H 1.09005 * 109.50663 * 298.65670 * 12 11 10 14 14 C 1.52564 * 109.49472 * 178.60050 * 12 11 10 15 15 C 1.47087 * 114.33117 * 155.02283 * 14 12 11 16 16 C 1.54865 * 110.32513 * 62.79995 * 15 14 12 17 17 N 1.44585 * 109.59751 * 288.73519 * 16 15 14 18 18 C 1.36935 * 118.64608 * 270.70272 * 17 16 15 19 19 H 1.08007 * 119.99510 * 35.05446 * 18 17 16 20 20 C 1.38811 * 120.00000 * 215.05894 * 18 17 16 21 21 N 1.31617 * 119.99933 * 359.00073 * 20 18 17 22 22 Si 1.86799 * 119.99710 * 178.99953 * 20 18 17 23 23 H 1.48504 * 109.46647 * 179.97438 * 22 20 18 24 24 H 1.48498 * 109.47388 * 300.00170 * 22 20 18 25 25 H 1.48500 * 109.47142 * 60.00195 * 22 20 18 26 26 C 1.47601 * 122.70914 * 90.98574 * 17 16 15 27 27 C 1.50885 * 109.48903 * 58.70845 * 12 11 10 28 28 C 1.53037 * 109.53885 * 61.36277 * 11 10 9 29 29 C 1.46935 * 120.62911 * 355.07509 * 8 6 2 30 30 H 1.09000 * 109.47242 * 305.00243 * 1 2 3 31 31 H 1.08996 * 109.46933 * 65.00455 * 1 2 3 32 32 H 1.09003 * 109.47049 * 184.99906 * 1 2 3 33 33 H 1.09004 * 109.58151 * 113.84212 * 9 8 6 34 34 H 1.08997 * 109.58585 * 353.42190 * 9 8 6 35 35 H 1.08998 * 109.49588 * 185.41194 * 10 9 8 36 36 H 1.09004 * 109.52253 * 65.33358 * 10 9 8 37 37 H 1.09002 * 109.45991 * 301.36021 * 11 10 9 38 38 H 1.08996 * 108.51190 * 33.76470 * 14 12 11 39 39 H 1.09005 * 108.38982 * 276.19168 * 14 12 11 40 40 H 1.09002 * 109.32630 * 302.53984 * 15 14 12 41 41 H 1.08997 * 109.19282 * 182.97291 * 15 14 12 42 42 H 1.08992 * 109.45135 * 168.69937 * 16 15 14 43 43 H 1.09002 * 109.44775 * 48.77321 * 16 15 14 44 44 H 0.97001 * 119.99355 * 180.02562 * 21 20 18 45 45 H 1.09002 * 108.95229 * 78.29530 * 26 17 16 46 46 H 1.09005 * 108.94813 * 196.92090 * 26 17 16 47 47 H 1.08998 * 109.36795 * 332.05309 * 27 12 11 48 48 H 1.09003 * 109.36180 * 91.79438 * 27 12 11 49 49 H 1.08998 * 109.49548 * 58.58855 * 28 11 10 50 50 H 1.09000 * 109.49914 * 178.68354 * 28 11 10 51 51 H 1.09003 * 109.58439 * 246.15833 * 29 8 6 52 52 H 1.09005 * 109.58309 * 6.57971 * 29 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0206 -0.6938 1.2020 5 7 2.3992 -1.2293 2.1296 6 6 2.0324 -0.7106 -1.2303 7 8 1.3227 -1.5124 -1.7998 8 7 3.2703 -0.4550 -1.6979 9 6 3.8150 -1.2165 -2.8302 10 6 5.1695 -1.8047 -2.4227 11 6 6.0806 -0.6803 -1.9252 12 6 7.4462 -1.2592 -1.5499 13 1 7.3254 -1.9846 -0.7453 14 6 8.3663 -0.1338 -1.0866 15 6 9.4452 -0.5655 -0.1848 16 6 10.3879 -1.5573 -0.9101 17 7 9.7104 -2.8206 -1.0987 18 6 9.8061 -3.7699 -0.1165 19 1 9.8429 -3.4717 0.9209 20 6 9.8559 -5.1154 -0.4542 21 7 9.7913 -5.4797 -1.7173 22 14 10.0146 -6.4089 0.8841 23 1 10.0454 -7.7590 0.2663 24 1 11.2700 -6.1832 1.6444 25 1 8.8539 -6.3130 1.8054 26 6 8.9248 -3.1314 -2.3090 27 6 8.0530 -1.9382 -2.7529 28 6 5.4524 -0.0182 -0.6967 29 6 4.1012 0.5903 -1.0845 30 1 -0.3634 0.5895 0.8418 31 1 -0.3633 0.4342 -0.9314 32 1 -0.3633 -1.0238 0.0896 33 1 3.9466 -0.5545 -3.6861 34 1 3.1299 -2.0231 -3.0913 35 1 5.6286 -2.2911 -3.2834 36 1 5.0248 -2.5350 -1.6265 37 1 6.2051 0.0620 -2.7136 38 1 7.7647 0.6157 -0.5725 39 1 8.8146 0.3280 -1.9664 40 1 9.0119 -1.0528 0.6887 41 1 10.0157 0.3065 0.1345 42 1 11.2837 -1.7122 -0.3088 43 1 10.6687 -1.1476 -1.8803 44 1 9.8257 -6.4200 -1.9531 45 1 9.6080 -3.3948 -3.1165 46 1 8.2785 -3.9845 -2.1021 47 1 7.2569 -2.2953 -3.4062 48 1 8.6735 -1.2252 -3.2957 49 1 5.3047 -0.7650 0.0834 50 1 6.1129 0.7670 -0.3289 51 1 4.2561 1.3995 -1.7981 52 1 3.6048 0.9758 -0.1938 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001075448418.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:53:36 Heat of formation + Delta-G solvation = -14.624371 kcal Electronic energy + Delta-G solvation = -30308.076403 eV Core-core repulsion = 26499.966176 eV Total energy + Delta-G solvation = -3808.110227 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 333.216 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.63555 -40.20856 -38.32325 -37.81669 -35.98137 -34.52423 -34.01880 -32.81847 -31.94369 -31.84544 -28.21936 -27.03153 -25.95075 -25.41417 -24.25711 -23.78564 -22.05227 -21.13315 -20.62097 -20.51251 -18.80398 -18.53637 -18.36873 -16.98408 -16.93797 -16.46291 -15.94208 -15.79428 -15.46741 -15.31012 -15.14272 -15.08306 -14.91924 -14.45918 -14.32386 -14.22344 -13.99252 -13.96864 -13.70490 -13.55105 -13.22648 -13.06096 -13.00136 -12.82108 -12.80198 -12.70094 -12.48723 -12.38915 -12.30611 -12.17143 -12.03851 -11.87802 -11.57133 -11.45059 -11.31201 -11.19985 -10.92904 -10.87268 -10.62057 -10.45963 -9.67712 -8.48813 -7.87070 -5.41973 1.09823 1.39662 1.40735 1.47207 1.58861 1.63591 2.04179 2.46292 2.84763 3.27269 3.34568 3.68520 3.73848 3.82034 3.86326 3.95226 4.04981 4.11722 4.13623 4.31174 4.42939 4.44389 4.53035 4.59922 4.62736 4.66014 4.81586 4.83294 4.85988 4.86446 4.90391 4.91399 4.97237 5.06573 5.11646 5.14015 5.24302 5.29131 5.31445 5.31838 5.39378 5.44284 5.49496 5.58504 5.60985 5.66384 5.78585 5.86975 5.90936 6.27958 6.36775 6.44935 6.98545 7.21516 7.99121 8.38182 9.15659 Molecular weight = 333.22amu Principal moments of inertia in cm(-1) A = 0.013050 B = 0.003261 C = 0.003033 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2145.143295 B = 8583.507968 C = 9229.749875 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.006 4.006 3 H 0.186 0.814 4 C 0.231 3.769 5 N -0.465 5.465 6 C 0.518 3.482 7 O -0.566 6.566 8 N -0.603 5.603 9 C 0.118 3.882 10 C -0.130 4.130 11 C -0.070 4.070 12 C -0.061 4.061 13 H 0.030 0.970 14 C -0.098 4.098 15 C -0.133 4.133 16 C 0.152 3.848 17 N -0.604 5.604 18 C -0.265 4.265 19 H 0.054 0.946 20 C -0.042 4.042 21 N -0.932 5.932 22 Si 0.958 3.042 23 H -0.292 1.292 24 H -0.274 1.274 25 H -0.284 1.284 26 C 0.192 3.808 27 C -0.129 4.129 28 C -0.132 4.132 29 C 0.101 3.899 30 H 0.099 0.901 31 H 0.096 0.904 32 H 0.049 0.951 33 H 0.100 0.900 34 H 0.071 0.929 35 H 0.080 0.920 36 H 0.028 0.972 37 H 0.098 0.902 38 H 0.076 0.924 39 H 0.062 0.938 40 H 0.030 0.970 41 H 0.074 0.926 42 H 0.027 0.973 43 H 0.041 0.959 44 H 0.248 0.752 45 H -0.014 1.014 46 H 0.032 0.968 47 H 0.070 0.930 48 H 0.058 0.942 49 H 0.031 0.969 50 H 0.100 0.900 51 H 0.114 0.886 52 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.931 21.800 -2.421 27.109 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.030 4.030 3 H 0.203 0.797 4 C -0.087 4.087 5 N -0.142 5.142 6 C 0.304 3.696 7 O -0.444 6.444 8 N -0.335 5.335 9 C -0.004 4.004 10 C -0.168 4.168 11 C -0.088 4.088 12 C -0.080 4.080 13 H 0.048 0.952 14 C -0.135 4.135 15 C -0.173 4.173 16 C 0.025 3.975 17 N -0.327 5.327 18 C -0.396 4.396 19 H 0.072 0.928 20 C -0.238 4.238 21 N -0.578 5.578 22 Si 0.786 3.214 23 H -0.218 1.218 24 H -0.200 1.200 25 H -0.210 1.210 26 C 0.067 3.933 27 C -0.167 4.167 28 C -0.170 4.170 29 C -0.020 4.020 30 H 0.118 0.882 31 H 0.115 0.885 32 H 0.068 0.932 33 H 0.118 0.882 34 H 0.090 0.910 35 H 0.098 0.902 36 H 0.047 0.953 37 H 0.116 0.884 38 H 0.095 0.905 39 H 0.080 0.920 40 H 0.049 0.951 41 H 0.092 0.908 42 H 0.046 0.954 43 H 0.059 0.941 44 H 0.057 0.943 45 H 0.004 0.996 46 H 0.051 0.949 47 H 0.088 0.912 48 H 0.077 0.923 49 H 0.050 0.950 50 H 0.118 0.882 51 H 0.132 0.868 52 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -15.698 20.421 -1.430 25.797 hybrid contribution 0.555 -1.874 0.481 2.012 sum -15.143 18.547 -0.949 23.963 Atomic orbital electron populations 1.21714 0.87952 1.03619 1.05656 1.19286 1.00241 1.01239 0.82195 0.79677 1.28914 0.92504 0.93164 0.94141 1.81336 1.09653 1.09630 1.13531 1.20489 0.81573 0.82185 0.85398 1.90727 1.56728 1.36436 1.60552 1.48315 1.14367 1.37283 1.33575 1.21625 0.93795 0.96382 0.88583 1.22022 0.95547 0.98147 1.01092 1.21129 0.92662 0.96863 0.98168 1.20416 0.94381 0.96571 0.96613 0.95170 1.20428 0.96327 0.97321 0.99456 1.21316 0.98488 0.98813 0.98671 1.20878 0.93224 0.86080 0.97280 1.43760 1.56624 1.13283 1.19016 1.19340 1.44493 0.87398 0.88349 0.92823 1.25957 1.00331 0.99853 0.97639 1.70167 1.55533 1.15317 1.16749 0.85499 0.78258 0.78559 0.79056 1.21763 1.19977 1.21001 1.20816 0.91634 0.94339 0.86507 1.22151 0.98823 0.97924 0.97819 1.22052 0.97076 1.00643 0.97183 1.22198 0.90110 0.89560 1.00125 0.88194 0.88548 0.93177 0.88190 0.91003 0.90175 0.95341 0.88386 0.90519 0.91950 0.95092 0.90796 0.95418 0.94069 0.94299 0.99568 0.94937 0.91210 0.92344 0.94969 0.88159 0.86798 0.87623 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.19 8.57 71.98 0.62 -0.57 16 2 C -0.01 -0.07 2.29 -13.35 -0.03 -0.10 16 3 H 0.19 0.24 6.38 -2.39 -0.02 0.23 16 4 C 0.23 4.63 14.32 89.44 1.28 5.91 16 5 N -0.47 -13.01 18.54 20.01 0.37 -12.64 16 6 C 0.52 9.92 6.78 87.66 0.59 10.52 16 7 O -0.57 -15.55 15.60 -3.03 -0.05 -15.60 16 8 N -0.60 -10.29 2.97 -818.89 -2.43 -12.72 16 9 C 0.12 2.33 6.42 86.36 0.55 2.88 16 10 C -0.13 -3.23 5.10 30.67 0.16 -3.07 16 11 C -0.07 -1.52 1.71 -10.77 -0.02 -1.54 16 12 C -0.06 -1.90 1.40 -11.63 -0.02 -1.91 16 13 H 0.03 1.25 7.49 -2.38 -0.02 1.23 16 14 C -0.10 -2.67 4.57 28.61 0.13 -2.54 16 15 C -0.13 -4.40 5.74 29.39 0.17 -4.24 16 16 C 0.15 6.32 5.65 87.37 0.49 6.81 16 17 N -0.60 -30.65 2.26 -697.66 -1.57 -32.23 16 18 C -0.26 -15.07 9.37 84.03 0.79 -14.28 16 19 H 0.05 3.05 7.83 -2.91 -0.02 3.02 16 20 C -0.04 -2.44 5.21 84.86 0.44 -2.00 16 21 N -0.93 -56.61 10.69 21.65 0.23 -56.38 16 22 Si 0.96 47.03 29.55 68.60 2.03 49.06 16 23 H -0.29 -14.28 7.11 99.48 0.71 -13.57 16 24 H -0.27 -12.97 7.11 99.48 0.71 -12.26 16 25 H -0.28 -13.79 7.11 99.48 0.71 -13.08 16 26 C 0.19 9.44 4.66 86.61 0.40 9.84 16 27 C -0.13 -4.53 5.11 30.35 0.15 -4.38 16 28 C -0.13 -2.38 5.13 30.67 0.16 -2.22 16 29 C 0.10 1.08 6.25 86.36 0.54 1.62 16 30 H 0.10 0.41 8.14 -2.39 -0.02 0.39 16 31 H 0.10 0.65 8.14 -2.39 -0.02 0.63 16 32 H 0.05 0.73 8.04 -2.39 -0.02 0.71 16 33 H 0.10 1.42 8.14 -2.38 -0.02 1.40 16 34 H 0.07 1.73 7.04 -2.39 -0.02 1.71 16 35 H 0.08 2.05 5.89 -2.39 -0.01 2.04 16 36 H 0.03 0.91 8.14 -2.38 -0.02 0.89 16 37 H 0.10 1.64 8.14 -2.39 -0.02 1.62 16 38 H 0.08 1.63 5.53 -2.39 -0.01 1.61 16 39 H 0.06 1.54 7.35 -2.38 -0.02 1.53 16 40 H 0.03 1.18 8.14 -2.39 -0.02 1.16 16 41 H 0.07 2.01 8.14 -2.39 -0.02 1.99 16 42 H 0.03 1.20 7.99 -2.39 -0.02 1.18 16 43 H 0.04 1.60 8.06 -2.39 -0.02 1.58 16 44 H 0.25 14.69 8.31 -92.71 -0.77 13.92 16 45 H -0.01 -0.75 7.98 -2.39 -0.02 -0.77 16 46 H 0.03 1.84 6.46 -2.38 -0.02 1.82 16 47 H 0.07 2.25 5.38 -2.39 -0.01 2.24 16 48 H 0.06 1.88 7.31 -2.39 -0.02 1.86 16 49 H 0.03 0.81 8.14 -2.39 -0.02 0.79 16 50 H 0.10 1.47 5.99 -2.39 -0.01 1.46 16 51 H 0.11 0.54 8.14 -2.39 -0.02 0.52 16 52 H 0.11 0.62 5.30 -2.38 -0.01 0.60 16 Total: -1.00 -79.20 390.81 5.90 -73.30 By element: Atomic # 1 Polarization: 5.56 SS G_CDS: 0.91 Total: 6.47 kcal Atomic # 6 Polarization: -5.67 SS G_CDS: 6.42 Total: 0.74 kcal Atomic # 7 Polarization: -110.57 SS G_CDS: -3.41 Total: -113.97 kcal Atomic # 8 Polarization: -15.55 SS G_CDS: -0.05 Total: -15.60 kcal Atomic # 14 Polarization: 47.03 SS G_CDS: 2.03 Total: 49.06 kcal Total: -79.20 5.90 -73.30 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001075448418.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.675 kcal (2) G-P(sol) polarization free energy of solvation -79.199 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.523 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.899 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.300 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.624 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds