Wall clock time and date at job start Tue Mar 31 2020 17:26:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08998 * 109.46954 * 2 1 4 4 C 1.53000 * 109.47351 * 239.99499 * 2 1 3 5 5 C 1.50701 * 109.46853 * 65.00249 * 4 2 1 6 6 O 1.21276 * 120.00176 * 6.25917 * 5 4 2 7 7 N 1.34777 * 119.99661 * 186.26045 * 5 4 2 8 8 C 1.46965 * 120.36135 * 175.20858 * 7 5 4 9 9 C 1.52330 * 109.11299 * 68.33529 * 8 7 5 10 10 C 1.53800 * 109.15671 * 72.69790 * 9 8 7 11 11 C 1.52447 * 109.40908 * 282.16347 * 10 9 8 12 12 C 1.53956 * 110.72907 * 113.73106 * 11 10 9 13 13 C 1.52882 * 109.72887 * 315.63585 * 12 11 10 14 14 H 1.08997 * 109.49798 * 47.08602 * 13 12 11 15 15 N 1.46491 * 109.48906 * 167.13170 * 13 12 11 16 16 C 1.36939 * 120.00293 * 205.19504 * 15 13 12 17 17 H 1.08001 * 119.99880 * 359.72611 * 16 15 13 18 18 C 1.38814 * 120.00016 * 179.71717 * 16 15 13 19 19 N 1.31620 * 119.99769 * 179.97438 * 18 16 15 20 20 Si 1.86801 * 120.00013 * 0.02562 * 18 16 15 21 21 H 1.48505 * 109.46777 * 89.99895 * 20 18 16 22 22 H 1.48501 * 109.47062 * 209.99540 * 20 18 16 23 23 H 1.48490 * 109.47210 * 329.99657 * 20 18 16 24 24 C 1.45338 * 120.36573 * 355.18022 * 7 5 4 25 25 N 1.46506 * 109.46742 * 119.99284 * 2 1 3 26 26 C 1.36343 * 125.63138 * 59.70151 * 25 2 1 27 27 C 1.34858 * 108.21561 * 179.82560 * 26 25 2 28 28 C 1.40889 * 107.41679 * 0.42243 * 27 26 25 29 29 C 1.34856 * 107.41488 * 359.73693 * 28 27 26 30 30 H 1.09002 * 109.47105 * 300.00735 * 1 2 3 31 31 H 1.09001 * 109.46703 * 60.00508 * 1 2 3 32 32 H 1.08998 * 109.46954 * 180.02562 * 1 2 3 33 33 H 1.08997 * 109.47158 * 305.00441 * 4 2 1 34 34 H 1.09004 * 109.46900 * 185.00000 * 4 2 1 35 35 H 1.09002 * 109.52929 * 188.22657 * 8 7 5 36 36 H 1.09001 * 109.53026 * 308.36538 * 8 7 5 37 37 H 1.08994 * 109.52571 * 192.60430 * 9 8 7 38 38 H 1.09000 * 109.52228 * 312.73240 * 9 8 7 39 39 H 1.09003 * 109.47957 * 42.14599 * 10 9 8 40 40 H 1.09002 * 109.48220 * 162.16823 * 10 9 8 41 41 H 1.08994 * 109.22602 * 234.05458 * 11 10 9 42 42 H 1.09002 * 109.22670 * 353.45136 * 11 10 9 43 43 H 1.08997 * 109.42903 * 195.56082 * 12 11 10 44 44 H 1.09001 * 109.43027 * 75.71074 * 12 11 10 45 45 H 0.97001 * 120.00150 * 24.91479 * 15 13 12 46 46 H 0.97001 * 119.99997 * 179.97438 * 19 18 16 47 47 H 1.09003 * 109.67608 * 103.63772 * 24 7 5 48 48 H 1.08997 * 109.70948 * 343.11256 * 24 7 5 49 49 H 1.07996 * 125.89506 * 359.94998 * 26 25 2 50 50 H 1.07998 * 126.29051 * 180.16029 * 27 26 25 51 51 H 1.07997 * 126.29599 * 179.73581 * 28 27 26 52 52 H 1.08007 * 125.88663 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 1.6414 0.0569 -2.4765 6 8 1.1121 1.1419 -2.3612 7 7 1.8732 -0.4529 -3.7024 8 6 1.3944 0.2490 -4.9016 9 6 2.1766 1.5457 -5.0661 10 6 3.6055 1.2177 -5.5309 11 6 4.4263 0.7327 -4.3413 12 6 4.8137 -0.7474 -4.5137 13 6 3.6038 -1.5439 -5.0027 14 1 3.1296 -1.0145 -5.8290 15 7 4.0404 -2.8667 -5.4561 16 6 3.2988 -3.5529 -6.3804 17 1 2.3897 -3.1208 -6.7719 18 6 3.7156 -4.8038 -6.8145 19 7 3.0025 -5.4636 -7.7025 20 14 5.2878 -5.5514 -6.1371 21 1 4.9738 -6.3509 -4.9257 22 1 5.9009 -6.4304 -7.1651 23 1 6.2385 -4.4673 -5.7821 24 6 2.5999 -1.7026 -3.8531 25 7 2.0183 -0.6905 1.1963 26 6 1.7559 -1.9867 1.5280 27 6 2.3799 -2.2585 2.6922 28 6 3.0440 -1.0844 3.0989 29 6 2.8054 -0.1416 2.1648 30 1 -0.3633 0.5140 0.8899 31 1 -0.3633 0.5138 -0.8901 32 1 -0.3633 -1.0277 0.0005 33 1 1.6054 -1.7199 -1.2950 34 1 3.1264 -0.7995 -1.2054 35 1 1.5458 -0.3816 -5.7777 36 1 0.3333 0.4734 -4.7931 37 1 1.6871 2.1746 -5.8097 38 1 2.2145 2.0718 -4.1122 39 1 3.5704 0.4371 -6.2908 40 1 4.0660 2.1125 -5.9498 41 1 5.3320 1.3337 -4.2612 42 1 3.8390 0.8455 -3.4300 43 1 5.1490 -1.1482 -3.5572 44 1 5.6199 -0.8286 -5.2427 45 1 4.8570 -3.2548 -5.1047 46 1 3.2940 -6.3375 -8.0061 47 1 1.9019 -2.5075 -4.0838 48 1 3.1322 -1.9318 -2.9300 49 1 1.1540 -2.6772 0.9560 50 1 2.3687 -3.2016 3.2184 51 1 3.6355 -0.9620 3.9942 52 1 3.1739 0.8736 2.1812 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001088415935.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:26:51 Heat of formation + Delta-G solvation = 33.443535 kcal Electronic energy + Delta-G solvation = -30469.627929 eV Core-core repulsion = 26663.602083 eV Total energy + Delta-G solvation = -3806.025846 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 333.216 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.38733 -40.45289 -37.97717 -35.32122 -34.64509 -34.20729 -32.35718 -30.73134 -29.83530 -28.81593 -28.46923 -27.08670 -26.19426 -23.92248 -22.97757 -22.12152 -21.50726 -20.56434 -19.86731 -19.54133 -18.48241 -17.73925 -17.70204 -16.62394 -16.03662 -15.98938 -15.21021 -14.87918 -14.54646 -14.33399 -14.15765 -13.90354 -13.88296 -13.56097 -13.45375 -12.98863 -12.93800 -12.76851 -12.67099 -12.55621 -12.33821 -12.13945 -11.97817 -11.96511 -11.65980 -11.57929 -11.42593 -11.25542 -11.00106 -10.93280 -10.80031 -10.52341 -10.40676 -10.35510 -9.92673 -9.72869 -9.66024 -9.06561 -8.67799 -8.37448 -8.20518 -7.41520 -5.89455 -3.27005 2.22619 2.59829 2.71569 3.02067 3.23686 3.29668 3.32139 3.38532 4.30872 4.47973 4.51033 4.62188 4.84094 4.92539 4.92817 4.99751 5.04053 5.17417 5.23363 5.25315 5.26433 5.32064 5.34542 5.46856 5.51229 5.52985 5.57809 5.65214 5.66459 5.72034 5.74668 5.77813 5.86021 5.96104 5.99407 6.09912 6.12170 6.17392 6.23571 6.23796 6.28329 6.40879 6.48451 6.51786 6.63899 6.82133 6.95101 7.20197 7.33425 7.54692 7.84240 8.18547 8.29350 9.06354 9.78960 9.97384 11.28221 Molecular weight = 333.22amu Principal moments of inertia in cm(-1) A = 0.010258 B = 0.003769 C = 0.003120 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2728.841515 B = 7426.570008 C = 8972.250454 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.150 3.850 3 H 0.106 0.894 4 C -0.153 4.153 5 C 0.520 3.480 6 O -0.549 6.549 7 N -0.592 5.592 8 C 0.115 3.885 9 C -0.136 4.136 10 C -0.128 4.128 11 C -0.112 4.112 12 C -0.128 4.128 13 C 0.161 3.839 14 H 0.077 0.923 15 N -0.744 5.744 16 C -0.252 4.252 17 H 0.090 0.910 18 C 0.010 3.990 19 N -0.929 5.929 20 Si 0.883 3.117 21 H -0.283 1.283 22 H -0.290 1.290 23 H -0.276 1.276 24 C 0.079 3.921 25 N -0.442 5.442 26 C -0.012 4.012 27 C -0.205 4.205 28 C -0.205 4.205 29 C -0.016 4.016 30 H 0.061 0.939 31 H 0.091 0.909 32 H 0.059 0.941 33 H 0.099 0.901 34 H 0.100 0.900 35 H 0.092 0.908 36 H 0.067 0.933 37 H 0.067 0.933 38 H 0.077 0.923 39 H 0.078 0.922 40 H 0.056 0.944 41 H 0.052 0.948 42 H 0.058 0.942 43 H 0.055 0.945 44 H 0.066 0.934 45 H 0.362 0.638 46 H 0.261 0.739 47 H 0.077 0.923 48 H 0.071 0.929 49 H 0.157 0.843 50 H 0.132 0.868 51 H 0.132 0.868 52 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.268 12.822 14.866 19.673 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.047 3.953 3 H 0.124 0.876 4 C -0.193 4.193 5 C 0.307 3.693 6 O -0.429 6.429 7 N -0.324 5.324 8 C -0.007 4.007 9 C -0.174 4.174 10 C -0.165 4.165 11 C -0.151 4.151 12 C -0.166 4.166 13 C 0.051 3.949 14 H 0.095 0.905 15 N -0.386 5.386 16 C -0.381 4.381 17 H 0.108 0.892 18 C -0.186 4.186 19 N -0.576 5.576 20 Si 0.713 3.287 21 H -0.210 1.210 22 H -0.217 1.217 23 H -0.203 1.203 24 C -0.046 4.046 25 N -0.118 5.118 26 C -0.142 4.142 27 C -0.229 4.229 28 C -0.230 4.230 29 C -0.146 4.146 30 H 0.080 0.920 31 H 0.110 0.890 32 H 0.078 0.922 33 H 0.118 0.882 34 H 0.118 0.882 35 H 0.110 0.890 36 H 0.085 0.915 37 H 0.085 0.915 38 H 0.096 0.904 39 H 0.096 0.904 40 H 0.075 0.925 41 H 0.071 0.929 42 H 0.077 0.923 43 H 0.074 0.926 44 H 0.085 0.915 45 H 0.195 0.805 46 H 0.071 0.929 47 H 0.095 0.905 48 H 0.089 0.911 49 H 0.175 0.825 50 H 0.150 0.850 51 H 0.149 0.851 52 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -1.841 13.453 14.397 19.790 hybrid contribution 1.269 -0.972 0.438 1.657 sum -0.572 12.480 14.835 19.395 Atomic orbital electron populations 1.22232 0.92961 1.02846 1.04071 1.21097 0.95869 0.96606 0.81681 0.87622 1.22053 1.03778 1.01006 0.92493 1.20127 0.78835 0.86017 0.84310 1.90645 1.44472 1.21130 1.86619 1.47843 1.54897 1.24248 1.05416 1.21551 0.97791 0.93611 0.87703 1.22038 0.95718 0.97358 1.02333 1.21844 0.95058 1.01121 0.98500 1.21637 0.99163 0.95655 0.98604 1.22084 0.98814 0.94722 1.01001 1.20890 0.92553 0.86952 0.94534 0.90513 1.42770 1.27951 1.17231 1.50622 1.19024 1.05238 0.98706 1.15161 0.89171 1.24671 0.98227 0.97069 0.98663 1.69696 1.39455 1.14598 1.33856 0.86585 0.84373 0.79202 0.78552 1.20978 1.21666 1.20264 1.22722 0.95856 0.84774 1.01296 1.44364 1.39050 1.10327 1.18016 1.21766 1.06508 0.86299 0.99618 1.20878 1.04663 0.99283 0.98117 1.20862 1.06954 0.93979 1.01197 1.21828 1.01477 0.99725 0.91579 0.92023 0.89047 0.92244 0.88247 0.88181 0.88976 0.91467 0.91483 0.90411 0.90382 0.92545 0.92926 0.92322 0.92637 0.91545 0.80477 0.92900 0.90484 0.91094 0.82531 0.85013 0.85055 0.82519 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.66 8.98 37.16 0.33 -1.33 16 2 C 0.15 1.56 2.67 -67.93 -0.18 1.38 16 3 H 0.11 1.13 7.78 -51.93 -0.40 0.72 16 4 C -0.15 -1.66 3.56 -27.88 -0.10 -1.76 16 5 C 0.52 6.67 5.82 -10.99 -0.06 6.61 16 6 O -0.55 -8.01 12.79 5.56 0.07 -7.94 16 7 N -0.59 -7.86 1.68 -174.36 -0.29 -8.15 16 8 C 0.12 1.51 5.20 -4.13 -0.02 1.49 16 9 C -0.14 -1.65 5.54 -26.66 -0.15 -1.80 16 10 C -0.13 -1.58 5.49 -26.60 -0.15 -1.72 16 11 C -0.11 -1.42 5.40 -26.52 -0.14 -1.56 16 12 C -0.13 -1.83 5.22 -26.29 -0.14 -1.97 16 13 C 0.16 2.67 2.29 -67.76 -0.16 2.51 16 14 H 0.08 1.33 3.29 -51.93 -0.17 1.16 16 15 N -0.74 -15.76 4.93 -53.26 -0.26 -16.02 16 16 C -0.25 -6.49 10.37 -15.06 -0.16 -6.65 16 17 H 0.09 2.49 8.06 -52.49 -0.42 2.07 16 18 C 0.01 0.28 5.50 -17.43 -0.10 0.19 16 19 N -0.93 -27.78 13.97 55.49 0.78 -27.01 16 20 Si 0.88 20.95 27.74 -169.99 -4.71 16.23 16 21 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 22 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 23 H -0.28 -6.16 6.52 56.52 0.37 -5.79 16 24 C 0.08 1.17 5.38 -4.43 -0.02 1.15 16 25 N -0.44 -4.82 2.62 -110.02 -0.29 -5.11 16 26 C -0.01 -0.13 10.45 -16.75 -0.18 -0.31 16 27 C -0.20 -2.32 10.86 -39.78 -0.43 -2.75 16 28 C -0.21 -2.27 10.86 -39.78 -0.43 -2.70 16 29 C -0.02 -0.17 11.39 -16.75 -0.19 -0.36 16 30 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.09 1.05 6.18 -51.93 -0.32 0.73 16 32 H 0.06 0.58 7.91 -51.93 -0.41 0.16 16 33 H 0.10 1.05 7.90 -51.93 -0.41 0.64 16 34 H 0.10 1.08 7.65 -51.93 -0.40 0.69 16 35 H 0.09 1.28 6.07 -51.93 -0.32 0.97 16 36 H 0.07 0.87 8.13 -51.93 -0.42 0.45 16 37 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 38 H 0.08 1.05 6.04 -51.93 -0.31 0.73 16 39 H 0.08 1.07 5.47 -51.93 -0.28 0.79 16 40 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 41 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 42 H 0.06 0.76 5.38 -51.93 -0.28 0.48 16 43 H 0.05 0.76 7.87 -51.93 -0.41 0.35 16 44 H 0.07 1.01 8.14 -51.93 -0.42 0.58 16 45 H 0.36 7.68 5.66 -40.82 -0.23 7.45 16 46 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 47 H 0.08 1.31 8.10 -51.93 -0.42 0.89 16 48 H 0.07 0.96 5.91 -51.93 -0.31 0.65 16 49 H 0.16 1.49 8.06 -52.49 -0.42 1.07 16 50 H 0.13 1.30 8.06 -52.49 -0.42 0.88 16 51 H 0.13 1.23 8.06 -52.49 -0.42 0.81 16 52 H 0.16 1.33 8.06 -52.48 -0.42 0.91 16 LS Contribution 388.08 15.07 5.85 5.85 Total: -1.00 -29.69 388.08 -9.62 -39.32 By element: Atomic # 1 Polarization: 20.91 SS G_CDS: -8.49 Total: 12.42 kcal Atomic # 6 Polarization: -7.32 SS G_CDS: -2.27 Total: -9.59 kcal Atomic # 7 Polarization: -56.22 SS G_CDS: -0.07 Total: -56.29 kcal Atomic # 8 Polarization: -8.01 SS G_CDS: 0.07 Total: -7.94 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -4.71 Total: 16.23 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -29.69 -9.62 -39.32 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001088415935.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.761 kcal (2) G-P(sol) polarization free energy of solvation -29.694 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.067 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.624 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.317 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.444 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds