Wall clock time and date at job start Tue Mar 31 2020 17:26:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08998 * 109.46954 * 2 1 4 4 C 1.53000 * 109.47351 * 239.99499 * 2 1 3 5 5 C 1.50701 * 109.46853 * 65.00249 * 4 2 1 6 6 O 1.21276 * 120.00176 * 6.25917 * 5 4 2 7 7 N 1.34777 * 119.99661 * 186.26045 * 5 4 2 8 8 C 1.46965 * 120.36135 * 175.20858 * 7 5 4 9 9 C 1.52330 * 109.11299 * 68.33529 * 8 7 5 10 10 C 1.53800 * 109.15671 * 72.69790 * 9 8 7 11 11 C 1.52447 * 109.40908 * 282.16347 * 10 9 8 12 12 C 1.53956 * 110.72907 * 113.73106 * 11 10 9 13 13 C 1.52882 * 109.72887 * 315.63585 * 12 11 10 14 14 H 1.08997 * 109.49798 * 47.08602 * 13 12 11 15 15 N 1.46491 * 109.48906 * 167.13170 * 13 12 11 16 16 C 1.36939 * 120.00293 * 205.19504 * 15 13 12 17 17 H 1.08001 * 119.99880 * 359.72611 * 16 15 13 18 18 C 1.38814 * 120.00016 * 179.71717 * 16 15 13 19 19 N 1.31620 * 119.99769 * 179.97438 * 18 16 15 20 20 Si 1.86801 * 120.00013 * 0.02562 * 18 16 15 21 21 H 1.48505 * 109.46777 * 89.99895 * 20 18 16 22 22 H 1.48501 * 109.47062 * 209.99540 * 20 18 16 23 23 H 1.48490 * 109.47210 * 329.99657 * 20 18 16 24 24 C 1.45338 * 120.36573 * 355.18022 * 7 5 4 25 25 N 1.46506 * 109.46742 * 119.99284 * 2 1 3 26 26 C 1.36343 * 125.63138 * 59.70151 * 25 2 1 27 27 C 1.34858 * 108.21561 * 179.82560 * 26 25 2 28 28 C 1.40889 * 107.41679 * 0.42243 * 27 26 25 29 29 C 1.34856 * 107.41488 * 359.73693 * 28 27 26 30 30 H 1.09002 * 109.47105 * 300.00735 * 1 2 3 31 31 H 1.09001 * 109.46703 * 60.00508 * 1 2 3 32 32 H 1.08998 * 109.46954 * 180.02562 * 1 2 3 33 33 H 1.08997 * 109.47158 * 305.00441 * 4 2 1 34 34 H 1.09004 * 109.46900 * 185.00000 * 4 2 1 35 35 H 1.09002 * 109.52929 * 188.22657 * 8 7 5 36 36 H 1.09001 * 109.53026 * 308.36538 * 8 7 5 37 37 H 1.08994 * 109.52571 * 192.60430 * 9 8 7 38 38 H 1.09000 * 109.52228 * 312.73240 * 9 8 7 39 39 H 1.09003 * 109.47957 * 42.14599 * 10 9 8 40 40 H 1.09002 * 109.48220 * 162.16823 * 10 9 8 41 41 H 1.08994 * 109.22602 * 234.05458 * 11 10 9 42 42 H 1.09002 * 109.22670 * 353.45136 * 11 10 9 43 43 H 1.08997 * 109.42903 * 195.56082 * 12 11 10 44 44 H 1.09001 * 109.43027 * 75.71074 * 12 11 10 45 45 H 0.97001 * 120.00150 * 24.91479 * 15 13 12 46 46 H 0.97001 * 119.99997 * 179.97438 * 19 18 16 47 47 H 1.09003 * 109.67608 * 103.63772 * 24 7 5 48 48 H 1.08997 * 109.70948 * 343.11256 * 24 7 5 49 49 H 1.07996 * 125.89506 * 359.94998 * 26 25 2 50 50 H 1.07998 * 126.29051 * 180.16029 * 27 26 25 51 51 H 1.07997 * 126.29599 * 179.73581 * 28 27 26 52 52 H 1.08007 * 125.88663 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 1.6414 0.0569 -2.4765 6 8 1.1121 1.1419 -2.3612 7 7 1.8732 -0.4529 -3.7024 8 6 1.3944 0.2490 -4.9016 9 6 2.1766 1.5457 -5.0661 10 6 3.6055 1.2177 -5.5309 11 6 4.4263 0.7327 -4.3413 12 6 4.8137 -0.7474 -4.5137 13 6 3.6038 -1.5439 -5.0027 14 1 3.1296 -1.0145 -5.8290 15 7 4.0404 -2.8667 -5.4561 16 6 3.2988 -3.5529 -6.3804 17 1 2.3897 -3.1208 -6.7719 18 6 3.7156 -4.8038 -6.8145 19 7 3.0025 -5.4636 -7.7025 20 14 5.2878 -5.5514 -6.1371 21 1 4.9738 -6.3509 -4.9257 22 1 5.9009 -6.4304 -7.1651 23 1 6.2385 -4.4673 -5.7821 24 6 2.5999 -1.7026 -3.8531 25 7 2.0183 -0.6905 1.1963 26 6 1.7559 -1.9867 1.5280 27 6 2.3799 -2.2585 2.6922 28 6 3.0440 -1.0844 3.0989 29 6 2.8054 -0.1416 2.1648 30 1 -0.3633 0.5140 0.8899 31 1 -0.3633 0.5138 -0.8901 32 1 -0.3633 -1.0277 0.0005 33 1 1.6054 -1.7199 -1.2950 34 1 3.1264 -0.7995 -1.2054 35 1 1.5458 -0.3816 -5.7777 36 1 0.3333 0.4734 -4.7931 37 1 1.6871 2.1746 -5.8097 38 1 2.2145 2.0718 -4.1122 39 1 3.5704 0.4371 -6.2908 40 1 4.0660 2.1125 -5.9498 41 1 5.3320 1.3337 -4.2612 42 1 3.8390 0.8455 -3.4300 43 1 5.1490 -1.1482 -3.5572 44 1 5.6199 -0.8286 -5.2427 45 1 4.8570 -3.2548 -5.1047 46 1 3.2940 -6.3375 -8.0061 47 1 1.9019 -2.5075 -4.0838 48 1 3.1322 -1.9318 -2.9300 49 1 1.1540 -2.6772 0.9560 50 1 2.3687 -3.2016 3.2184 51 1 3.6355 -0.9620 3.9942 52 1 3.1739 0.8736 2.1812 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001088415935.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:26:50 Heat of formation + Delta-G solvation = 19.168779 kcal Electronic energy + Delta-G solvation = -30470.246929 eV Core-core repulsion = 26663.602083 eV Total energy + Delta-G solvation = -3806.644846 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 333.216 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -42.24347 -41.51266 -39.14492 -36.54097 -35.86661 -35.29736 -34.01971 -32.24844 -30.79322 -29.66574 -29.45835 -28.27904 -27.32472 -25.44142 -24.12071 -23.16268 -22.80257 -21.39271 -21.02205 -20.45964 -19.69718 -19.42185 -18.64339 -17.72511 -17.19517 -17.02177 -16.56814 -16.10734 -15.71205 -15.48366 -15.24838 -15.18107 -14.89437 -14.73512 -14.41736 -14.36567 -14.05496 -13.96127 -13.94080 -13.63040 -13.30620 -13.12696 -13.09465 -12.93474 -12.86877 -12.80111 -12.64426 -12.35778 -12.24645 -12.10601 -12.08104 -11.93254 -11.79608 -11.57769 -11.45445 -11.19802 -11.06432 -10.64482 -9.61764 -9.50308 -9.22518 -9.01920 -8.00177 -5.34192 1.40284 1.41078 1.42831 1.50321 1.56030 1.80049 2.19646 2.24422 2.50451 3.31711 3.41945 3.46004 3.66899 3.76098 3.79833 3.98638 4.04150 4.09626 4.16615 4.19100 4.25753 4.34863 4.41035 4.42519 4.47642 4.53281 4.55207 4.65577 4.69025 4.72679 4.75860 4.83024 4.84552 4.93340 4.94178 5.00987 5.12142 5.15166 5.19326 5.29388 5.34005 5.39454 5.44285 5.46927 5.48344 5.67939 5.80715 6.14307 6.22642 6.38576 6.45167 6.53568 7.08958 7.12994 7.85129 8.03314 9.20922 Molecular weight = 333.22amu Principal moments of inertia in cm(-1) A = 0.010258 B = 0.003769 C = 0.003120 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2728.841515 B = 7426.570008 C = 8972.250454 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.156 3.844 3 H 0.106 0.894 4 C -0.147 4.147 5 C 0.523 3.477 6 O -0.563 6.563 7 N -0.592 5.592 8 C 0.113 3.887 9 C -0.127 4.127 10 C -0.126 4.126 11 C -0.105 4.105 12 C -0.121 4.121 13 C 0.155 3.845 14 H 0.069 0.931 15 N -0.746 5.746 16 C -0.225 4.225 17 H 0.060 0.940 18 C -0.059 4.059 19 N -0.983 5.983 20 Si 0.948 3.052 21 H -0.279 1.279 22 H -0.302 1.302 23 H -0.250 1.250 24 C 0.094 3.906 25 N -0.444 5.444 26 C -0.023 4.023 27 C -0.221 4.221 28 C -0.220 4.220 29 C -0.023 4.023 30 H 0.064 0.936 31 H 0.078 0.922 32 H 0.062 0.938 33 H 0.104 0.896 34 H 0.107 0.893 35 H 0.078 0.922 36 H 0.067 0.933 37 H 0.080 0.920 38 H 0.070 0.930 39 H 0.061 0.939 40 H 0.071 0.929 41 H 0.068 0.932 42 H 0.057 0.943 43 H 0.068 0.932 44 H 0.060 0.940 45 H 0.366 0.634 46 H 0.256 0.744 47 H 0.051 0.949 48 H 0.090 0.910 49 H 0.168 0.832 50 H 0.140 0.860 51 H 0.144 0.856 52 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.206 14.225 16.834 22.040 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.054 3.946 3 H 0.124 0.876 4 C -0.187 4.187 5 C 0.312 3.688 6 O -0.443 6.443 7 N -0.323 5.323 8 C -0.009 4.009 9 C -0.165 4.165 10 C -0.163 4.163 11 C -0.144 4.144 12 C -0.159 4.159 13 C 0.047 3.953 14 H 0.087 0.913 15 N -0.389 5.389 16 C -0.356 4.356 17 H 0.078 0.922 18 C -0.251 4.251 19 N -0.633 5.633 20 Si 0.776 3.224 21 H -0.206 1.206 22 H -0.229 1.229 23 H -0.175 1.175 24 C -0.032 4.032 25 N -0.119 5.119 26 C -0.153 4.153 27 C -0.246 4.246 28 C -0.244 4.244 29 C -0.153 4.153 30 H 0.083 0.917 31 H 0.097 0.903 32 H 0.081 0.919 33 H 0.123 0.877 34 H 0.125 0.875 35 H 0.097 0.903 36 H 0.086 0.914 37 H 0.098 0.902 38 H 0.088 0.912 39 H 0.079 0.921 40 H 0.090 0.910 41 H 0.087 0.913 42 H 0.075 0.925 43 H 0.087 0.913 44 H 0.078 0.922 45 H 0.199 0.801 46 H 0.065 0.935 47 H 0.069 0.931 48 H 0.109 0.891 49 H 0.186 0.814 50 H 0.158 0.842 51 H 0.162 0.838 52 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges -0.359 14.921 16.415 22.186 hybrid contribution 0.705 -1.290 -0.160 1.478 sum 0.346 13.631 16.254 21.216 Atomic orbital electron populations 1.22156 0.92915 1.02934 1.03541 1.21014 0.95804 0.96445 0.81355 0.87585 1.22021 1.04205 1.00889 0.91596 1.20387 0.78182 0.85808 0.84421 1.90648 1.45016 1.21890 1.86749 1.47777 1.54961 1.23739 1.05865 1.21567 0.98132 0.93941 0.87243 1.21951 0.95642 0.96634 1.02266 1.21817 0.95234 1.01220 0.98067 1.21587 0.99840 0.94498 0.98428 1.22003 0.97151 0.95475 1.01285 1.21099 0.94168 0.85031 0.94987 0.91321 1.42748 1.27661 1.18545 1.49947 1.18969 1.03939 0.98295 1.14390 0.92216 1.25424 1.01919 0.98016 0.99748 1.69875 1.41883 1.15106 1.36469 0.85508 0.80774 0.78664 0.77410 1.20555 1.22924 1.17459 1.22351 0.94932 0.84673 1.01222 1.44401 1.39134 1.10314 1.18089 1.22036 1.06744 0.86650 0.99874 1.21155 1.04951 0.99943 0.98509 1.21149 1.07307 0.94067 1.01914 1.22235 1.01139 1.00631 0.91305 0.91703 0.90331 0.91872 0.87727 0.87452 0.90330 0.91445 0.90192 0.91155 0.92061 0.91040 0.91301 0.92458 0.91302 0.92153 0.80080 0.93488 0.93077 0.89145 0.81429 0.84195 0.83843 0.80564 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.97 8.98 71.98 0.65 -2.32 16 2 C 0.16 2.92 2.67 44.99 0.12 3.04 16 3 H 0.11 2.01 7.78 -2.39 -0.02 2.00 16 4 C -0.15 -2.86 3.56 29.85 0.11 -2.75 16 5 C 0.52 12.52 5.82 87.66 0.51 13.03 16 6 O -0.56 -15.49 12.79 -3.02 -0.04 -15.53 16 7 N -0.59 -15.00 1.68 -823.93 -1.39 -16.39 16 8 C 0.11 2.90 5.20 86.07 0.45 3.35 16 9 C -0.13 -2.88 5.54 30.64 0.17 -2.71 16 10 C -0.13 -2.86 5.49 30.68 0.17 -2.69 16 11 C -0.11 -2.36 5.40 30.73 0.17 -2.19 16 12 C -0.12 -3.15 5.22 30.88 0.16 -2.99 16 13 C 0.16 4.99 2.29 45.11 0.10 5.09 16 14 H 0.07 2.36 3.29 -2.39 -0.01 2.36 16 15 N -0.75 -30.90 4.93 -322.42 -1.59 -32.49 16 16 C -0.23 -11.76 10.37 84.03 0.87 -10.89 16 17 H 0.06 3.44 8.06 -2.91 -0.02 3.41 16 18 C -0.06 -3.31 5.50 84.86 0.47 -2.84 16 19 N -0.98 -60.60 13.97 21.65 0.30 -60.30 16 20 Si 0.95 43.13 27.74 68.60 1.90 45.03 16 21 H -0.28 -12.43 7.11 99.48 0.71 -11.73 16 22 H -0.30 -14.25 7.11 99.48 0.71 -13.54 16 23 H -0.25 -10.13 6.52 99.48 0.65 -9.48 16 24 C 0.09 2.67 5.38 86.75 0.47 3.14 16 25 N -0.44 -8.73 2.62 -501.98 -1.31 -10.04 16 26 C -0.02 -0.47 10.45 83.22 0.87 0.40 16 27 C -0.22 -4.66 10.86 22.14 0.24 -4.42 16 28 C -0.22 -4.46 10.86 22.14 0.24 -4.22 16 29 C -0.02 -0.45 11.39 83.22 0.95 0.50 16 30 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 31 H 0.08 1.71 6.18 -2.39 -0.01 1.69 16 32 H 0.06 1.13 7.91 -2.39 -0.02 1.11 16 33 H 0.10 1.97 7.90 -2.39 -0.02 1.95 16 34 H 0.11 1.99 7.65 -2.39 -0.02 1.97 16 35 H 0.08 2.23 6.07 -2.39 -0.01 2.21 16 36 H 0.07 1.72 8.13 -2.39 -0.02 1.70 16 37 H 0.08 1.61 8.14 -2.39 -0.02 1.59 16 38 H 0.07 1.75 6.04 -2.39 -0.01 1.74 16 39 H 0.06 1.62 5.47 -2.39 -0.01 1.61 16 40 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 41 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 42 H 0.06 1.32 5.38 -2.39 -0.01 1.31 16 43 H 0.07 1.63 7.87 -2.39 -0.02 1.61 16 44 H 0.06 1.67 8.14 -2.39 -0.02 1.65 16 45 H 0.37 14.68 5.66 -92.71 -0.52 14.16 16 46 H 0.26 15.19 8.31 -92.71 -0.77 14.42 16 47 H 0.05 1.73 8.10 -2.39 -0.02 1.72 16 48 H 0.09 2.22 5.91 -2.39 -0.01 2.21 16 49 H 0.17 2.89 8.06 -2.91 -0.02 2.87 16 50 H 0.14 2.58 8.06 -2.91 -0.02 2.56 16 51 H 0.14 2.42 8.06 -2.91 -0.02 2.40 16 52 H 0.18 2.53 8.06 -2.91 -0.02 2.50 16 Total: -1.00 -64.23 388.08 4.91 -59.32 By element: Atomic # 1 Polarization: 39.55 SS G_CDS: 0.33 Total: 39.87 kcal Atomic # 6 Polarization: -16.19 SS G_CDS: 6.70 Total: -9.48 kcal Atomic # 7 Polarization: -115.22 SS G_CDS: -3.99 Total: -119.21 kcal Atomic # 8 Polarization: -15.49 SS G_CDS: -0.04 Total: -15.53 kcal Atomic # 14 Polarization: 43.13 SS G_CDS: 1.90 Total: 45.03 kcal Total: -64.23 4.91 -59.32 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001088415935.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.490 kcal (2) G-P(sol) polarization free energy of solvation -64.229 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.261 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.908 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.321 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.169 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds