Wall clock time and date at job start Tue Mar 31 2020 17:56:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09002 * 109.47375 * 2 1 4 4 C 1.50698 * 109.47347 * 239.99468 * 2 1 3 5 5 O 1.21290 * 119.99773 * 239.99965 * 4 2 1 6 6 N 1.34773 * 120.00289 * 59.72904 * 4 2 1 7 7 C 1.46496 * 120.00130 * 180.27486 * 6 4 2 8 8 H 1.08998 * 109.49196 * 324.99884 * 7 6 4 9 9 C 1.50882 * 109.49116 * 85.04674 * 7 6 4 10 10 C 1.53889 * 110.09970 * 211.84212 * 9 7 6 11 11 N 1.47606 * 112.16686 * 319.43877 * 10 9 7 12 12 C 1.36938 * 118.64220 * 137.86021 * 11 10 9 13 13 H 1.08002 * 119.99974 * 205.55630 * 12 11 10 14 14 C 1.38802 * 119.99929 * 25.55846 * 12 11 10 15 15 N 1.31618 * 120.00393 * 17.88517 * 14 12 11 16 16 Si 1.86807 * 120.00072 * 197.88237 * 14 12 11 17 17 H 1.48497 * 109.46688 * 0.02562 * 16 14 12 18 18 H 1.48506 * 109.46866 * 119.99934 * 16 14 12 19 19 H 1.48496 * 109.47145 * 240.00226 * 16 14 12 20 20 C 1.44584 * 122.71549 * 317.88938 * 11 10 9 21 21 C 1.54869 * 109.60021 * 90.69597 * 20 11 10 22 22 C 1.53002 * 109.32311 * 168.47431 * 21 20 11 23 23 C 1.52997 * 109.32734 * 49.00069 * 21 20 11 24 24 C 1.47088 * 110.32368 * 288.73403 * 21 20 11 25 25 N 1.46501 * 109.47080 * 119.99458 * 2 1 3 26 26 C 1.36347 * 125.63555 * 59.69277 * 25 2 1 27 27 C 1.34851 * 108.21647 * 179.83437 * 26 25 2 28 28 C 1.40888 * 107.42017 * 0.42563 * 27 26 25 29 29 C 1.34853 * 107.41445 * 359.73542 * 28 27 26 30 30 H 1.09003 * 109.46958 * 60.00438 * 1 2 3 31 31 H 1.09002 * 109.47375 * 180.02562 * 1 2 3 32 32 H 1.08999 * 109.47630 * 300.00800 * 1 2 3 33 33 H 0.97005 * 119.99482 * 0.26961 * 6 4 2 34 34 H 1.09007 * 109.36671 * 332.04279 * 9 7 6 35 35 H 1.08999 * 109.36958 * 91.65502 * 9 7 6 36 36 H 1.09002 * 108.94269 * 198.74981 * 10 9 7 37 37 H 1.08998 * 108.85925 * 80.08191 * 10 9 7 38 38 H 0.97000 * 120.00462 * 179.97438 * 15 14 12 39 39 H 1.09001 * 109.44502 * 330.66032 * 20 11 10 40 40 H 1.08991 * 109.44984 * 210.73719 * 20 11 10 41 41 H 1.09003 * 109.46652 * 180.86675 * 22 21 20 42 42 H 1.08998 * 109.47450 * 300.86687 * 22 21 20 43 43 H 1.08995 * 109.47202 * 60.86961 * 22 21 20 44 44 H 1.09006 * 109.46605 * 299.12547 * 23 21 20 45 45 H 1.09000 * 109.47402 * 59.12901 * 23 21 20 46 46 H 1.09000 * 109.47251 * 179.13072 * 23 21 20 47 47 H 1.09000 * 108.51389 * 301.55583 * 24 21 20 48 48 H 1.08996 * 108.51479 * 184.05650 * 24 21 20 49 49 H 1.08003 * 125.88922 * 359.96162 * 26 25 2 50 50 H 1.08000 * 126.28553 * 180.16332 * 27 26 25 51 51 H 1.07993 * 126.29391 * 179.73741 * 28 27 26 52 52 H 1.08003 * 125.88495 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 -1.2304 5 8 2.7296 -1.6966 -1.1189 6 7 1.7023 -0.2534 -2.4545 7 6 2.1857 -0.9477 -3.6505 8 1 3.1855 -1.3399 -3.4642 9 6 1.2526 -2.0855 -3.9839 10 6 2.0373 -3.2411 -4.6296 11 7 3.0565 -2.7585 -5.5820 12 6 4.2910 -3.3510 -5.5784 13 1 5.1542 -2.8026 -5.9257 14 6 4.4330 -4.6564 -5.1285 15 7 3.3795 -5.4404 -5.0403 16 14 6.1194 -5.3006 -4.6483 17 1 7.1305 -4.2294 -4.8367 18 1 6.1021 -5.7192 -3.2235 19 1 6.4661 -6.4650 -5.5022 20 6 2.8054 -1.6856 -6.5181 21 6 3.1948 -0.3322 -5.8739 22 6 3.2024 0.7566 -6.9487 23 6 4.5931 -0.4458 -5.2633 24 6 2.2320 0.0287 -4.8221 25 7 2.0183 -0.6905 1.1962 26 6 1.7558 -1.9867 1.5281 27 6 2.3798 -2.2584 2.6922 28 6 3.0439 -1.0843 3.0989 29 6 2.8053 -0.1415 2.1647 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3634 -1.0277 0.0005 32 1 -0.3634 0.5139 0.8899 33 1 1.1446 0.5353 -2.5436 34 1 0.7735 -2.4394 -3.0709 35 1 0.4888 -1.7351 -4.6780 36 1 1.3395 -3.8912 -5.1574 37 1 2.5300 -3.8145 -3.8444 38 1 3.4788 -6.3528 -4.7262 39 1 1.7472 -1.6721 -6.7793 40 1 3.3991 -1.8432 -7.4185 41 1 3.4913 1.7074 -6.5007 42 1 3.9153 0.4915 -7.7295 43 1 2.2062 0.8467 -7.3817 44 1 4.5909 -1.2153 -4.4912 45 1 5.3085 -0.7132 -6.0409 46 1 4.8759 0.5102 -4.8226 47 1 1.2382 0.0834 -5.2665 48 1 2.4911 1.0160 -4.4397 49 1 1.1539 -2.6773 0.9560 50 1 2.3686 -3.2015 3.2185 51 1 3.6353 -0.9619 3.9942 52 1 3.1745 0.8734 2.1808 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001089363103.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:56:21 Heat of formation + Delta-G solvation = 42.142328 kcal Electronic energy + Delta-G solvation = -30964.306093 eV Core-core repulsion = 27158.657455 eV Total energy + Delta-G solvation = -3805.648638 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 333.216 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -41.31780 -39.84432 -38.43280 -34.82667 -34.39910 -34.31819 -31.49207 -30.51428 -29.25566 -28.58261 -27.48199 -26.71821 -25.50085 -24.89975 -23.67668 -22.21678 -20.81467 -20.35215 -19.76239 -19.41331 -18.21345 -17.53732 -16.83988 -16.65356 -15.76172 -15.25306 -14.84052 -14.64432 -14.26094 -13.95450 -13.85106 -13.64087 -13.57682 -13.44770 -13.24837 -12.85776 -12.61987 -12.42748 -12.26135 -12.21634 -12.04251 -11.96404 -11.76075 -11.58647 -11.36210 -11.27412 -11.07407 -10.99911 -10.74099 -10.58757 -10.29109 -10.12809 -9.89812 -9.73159 -9.66607 -9.59522 -9.47397 -8.80077 -8.48985 -8.30478 -7.97562 -6.62200 -5.72272 -3.13729 2.31776 2.65393 2.83121 3.23334 3.36345 3.44264 3.53418 3.53792 4.41984 4.55052 4.57253 4.65484 4.97657 5.05591 5.19176 5.23925 5.26250 5.40421 5.43082 5.48262 5.54817 5.63782 5.67493 5.73811 5.77303 5.91114 5.96453 6.09750 6.14175 6.20051 6.22388 6.30627 6.37088 6.42220 6.44394 6.46402 6.55498 6.61743 6.72920 6.79458 6.84072 6.90573 7.06286 7.13472 7.30554 7.35505 7.41238 7.45779 7.65647 7.74717 7.91511 8.33777 8.52840 9.29678 9.97198 10.40833 11.35532 Molecular weight = 333.22amu Principal moments of inertia in cm(-1) A = 0.010667 B = 0.004321 C = 0.003495 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2624.389632 B = 6477.713518 C = 8008.644700 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.115 3.885 3 H 0.118 0.882 4 C 0.494 3.506 5 O -0.503 6.503 6 N -0.722 5.722 7 C 0.150 3.850 8 H 0.110 0.890 9 C -0.146 4.146 10 C 0.182 3.818 11 N -0.587 5.587 12 C -0.258 4.258 13 H 0.070 0.930 14 C 0.008 3.992 15 N -0.901 5.901 16 Si 0.893 3.107 17 H -0.278 1.278 18 H -0.288 1.288 19 H -0.292 1.292 20 C 0.169 3.831 21 C -0.093 4.093 22 C -0.133 4.133 23 C -0.131 4.131 24 C -0.095 4.095 25 N -0.432 5.432 26 C 0.022 3.978 27 C -0.211 4.211 28 C -0.198 4.198 29 C -0.023 4.023 30 H 0.079 0.921 31 H 0.071 0.929 32 H 0.074 0.926 33 H 0.391 0.609 34 H 0.053 0.947 35 H 0.045 0.955 36 H 0.025 0.975 37 H 0.077 0.923 38 H 0.252 0.748 39 H 0.031 0.969 40 H 0.047 0.953 41 H 0.043 0.957 42 H 0.053 0.947 43 H 0.047 0.953 44 H 0.081 0.919 45 H 0.047 0.953 46 H 0.025 0.975 47 H 0.053 0.947 48 H 0.048 0.952 49 H 0.155 0.845 50 H 0.132 0.868 51 H 0.132 0.868 52 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.724 15.817 7.880 19.285 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.007 3.993 3 H 0.136 0.864 4 C 0.276 3.724 5 O -0.376 6.376 6 N -0.374 5.374 7 C 0.047 3.953 8 H 0.128 0.872 9 C -0.186 4.186 10 C 0.056 3.944 11 N -0.307 5.307 12 C -0.388 4.388 13 H 0.088 0.912 14 C -0.191 4.191 15 N -0.545 5.545 16 Si 0.723 3.277 17 H -0.203 1.203 18 H -0.215 1.215 19 H -0.219 1.219 20 C 0.040 3.960 21 C -0.096 4.096 22 C -0.191 4.191 23 C -0.188 4.188 24 C -0.134 4.134 25 N -0.108 5.108 26 C -0.108 4.108 27 C -0.235 4.235 28 C -0.223 4.223 29 C -0.152 4.152 30 H 0.098 0.902 31 H 0.090 0.910 32 H 0.093 0.907 33 H 0.224 0.776 34 H 0.072 0.928 35 H 0.064 0.936 36 H 0.043 0.957 37 H 0.096 0.904 38 H 0.062 0.938 39 H 0.049 0.951 40 H 0.065 0.935 41 H 0.062 0.938 42 H 0.072 0.928 43 H 0.066 0.934 44 H 0.100 0.900 45 H 0.066 0.934 46 H 0.044 0.956 47 H 0.072 0.928 48 H 0.067 0.933 49 H 0.172 0.828 50 H 0.150 0.850 51 H 0.150 0.850 52 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -7.349 15.056 7.700 18.438 hybrid contribution 0.593 0.040 0.207 0.629 sum -6.757 15.095 7.908 18.332 Atomic orbital electron populations 1.22112 0.91466 1.04238 1.03683 1.21286 0.96617 0.97354 0.83998 0.86404 1.20500 0.81573 0.85681 0.84632 1.90870 1.35926 1.24860 1.85961 1.46277 1.53457 1.31807 1.05862 1.20681 1.00777 0.91733 0.82110 0.87202 1.22425 0.98269 0.98015 0.99865 1.20925 0.90193 0.90584 0.92649 1.43647 1.12228 1.37778 1.37070 1.19285 0.85417 0.94027 1.40057 0.91210 1.24965 0.96650 0.95686 1.01784 1.70076 1.28314 1.06327 1.49783 0.86373 0.84496 0.78593 0.78234 1.20282 1.21511 1.21887 1.20712 0.97157 0.86297 0.91830 1.20461 0.95884 0.98314 0.94983 1.21804 1.00951 0.97676 0.98685 1.21924 0.95196 1.00069 1.01567 1.20590 0.99779 0.97518 0.95464 1.43690 1.39818 1.10640 1.16674 1.21675 1.05412 0.85558 0.98177 1.20824 1.05040 0.99181 0.98471 1.20809 1.06414 0.93894 1.01139 1.21707 1.01990 0.99778 0.91686 0.90181 0.90980 0.90696 0.77619 0.92799 0.93615 0.95672 0.90449 0.93818 0.95099 0.93505 0.93785 0.92778 0.93410 0.89991 0.93387 0.95557 0.92824 0.93329 0.82757 0.84992 0.85038 0.82611 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.25 9.13 37.15 0.34 -0.91 16 2 C 0.11 1.23 3.36 -69.09 -0.23 1.00 16 3 H 0.12 0.94 8.06 -51.93 -0.42 0.52 16 4 C 0.49 7.32 6.93 -10.99 -0.08 7.24 16 5 O -0.50 -10.38 15.13 5.55 0.08 -10.30 16 6 N -0.72 -9.41 4.82 -55.06 -0.27 -9.68 16 7 C 0.15 2.50 1.98 -69.21 -0.14 2.36 16 8 H 0.11 2.36 4.73 -51.93 -0.25 2.11 16 9 C -0.15 -2.69 5.38 -27.33 -0.15 -2.84 16 10 C 0.18 4.31 4.67 -2.97 -0.01 4.30 16 11 N -0.59 -13.88 1.86 -172.12 -0.32 -14.20 16 12 C -0.26 -6.86 7.64 -15.06 -0.12 -6.97 16 13 H 0.07 1.83 6.44 -52.49 -0.34 1.49 16 14 C 0.01 0.22 4.81 -17.43 -0.08 0.14 16 15 N -0.90 -26.36 11.10 55.49 0.62 -25.75 16 16 Si 0.89 22.46 29.59 -169.99 -5.03 17.43 16 17 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 18 H -0.29 -7.48 7.11 56.52 0.40 -7.08 16 19 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 20 C 0.17 3.32 4.70 -4.08 -0.02 3.30 16 21 C -0.09 -1.50 0.72 -156.36 -0.11 -1.62 16 22 C -0.13 -1.78 8.37 37.16 0.31 -1.47 16 23 C -0.13 -2.36 6.77 37.16 0.25 -2.10 16 24 C -0.10 -1.39 3.40 -29.79 -0.10 -1.49 16 25 N -0.43 -5.74 2.40 -111.26 -0.27 -6.00 16 26 C 0.02 0.32 9.57 -16.75 -0.16 0.16 16 27 C -0.21 -3.04 10.86 -39.78 -0.43 -3.47 16 28 C -0.20 -2.63 10.86 -39.78 -0.43 -3.06 16 29 C -0.02 -0.29 11.39 -16.75 -0.19 -0.48 16 30 H 0.08 0.47 7.55 -51.93 -0.39 0.07 16 31 H 0.07 0.67 7.91 -51.93 -0.41 0.26 16 32 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 33 H 0.39 3.57 8.01 -40.82 -0.33 3.24 16 34 H 0.05 1.00 7.85 -51.92 -0.41 0.60 16 35 H 0.05 0.77 7.32 -51.93 -0.38 0.39 16 36 H 0.03 0.65 8.05 -51.93 -0.42 0.23 16 37 H 0.08 2.15 6.33 -51.93 -0.33 1.82 16 38 H 0.25 7.22 8.31 -40.82 -0.34 6.88 16 39 H 0.03 0.58 8.07 -51.93 -0.42 0.16 16 40 H 0.05 0.96 7.95 -51.93 -0.41 0.54 16 41 H 0.04 0.53 8.14 -51.93 -0.42 0.11 16 42 H 0.05 0.73 8.14 -51.93 -0.42 0.30 16 43 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 44 H 0.08 1.77 4.48 -51.93 -0.23 1.53 16 45 H 0.05 0.89 7.50 -51.93 -0.39 0.50 16 46 H 0.03 0.42 8.14 -51.93 -0.42 -0.01 16 47 H 0.05 0.72 7.36 -51.93 -0.38 0.34 16 48 H 0.05 0.62 8.00 -51.93 -0.42 0.21 16 49 H 0.15 2.23 8.06 -52.48 -0.42 1.81 16 50 H 0.13 1.70 8.06 -52.49 -0.42 1.27 16 51 H 0.13 1.47 8.06 -52.49 -0.42 1.05 16 52 H 0.16 1.47 8.06 -52.48 -0.42 1.05 16 LS Contribution 393.62 15.07 5.93 5.93 Total: -1.00 -32.70 393.62 -9.46 -42.16 By element: Atomic # 1 Polarization: 15.18 SS G_CDS: -8.86 Total: 6.32 kcal Atomic # 6 Polarization: -4.57 SS G_CDS: -1.35 Total: -5.92 kcal Atomic # 7 Polarization: -55.39 SS G_CDS: -0.24 Total: -55.62 kcal Atomic # 8 Polarization: -10.38 SS G_CDS: 0.08 Total: -10.30 kcal Atomic # 14 Polarization: 22.46 SS G_CDS: -5.03 Total: 17.43 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -32.70 -9.46 -42.16 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001089363103.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.306 kcal (2) G-P(sol) polarization free energy of solvation -32.703 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.603 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.460 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.163 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.142 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds