Wall clock time and date at job start Tue Mar 31 2020 17:56:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08989 * 109.47392 * 2 1 4 4 C 1.50697 * 109.47174 * 120.00565 * 2 1 3 5 5 O 1.21283 * 120.00674 * 119.99717 * 4 2 1 6 6 N 1.34774 * 119.99799 * 299.99563 * 4 2 1 7 7 C 1.46507 * 119.99973 * 180.02562 * 6 4 2 8 8 H 1.08997 * 108.44961 * 324.99870 * 7 6 4 9 9 C 1.47087 * 108.51090 * 82.69217 * 7 6 4 10 10 C 1.54871 * 110.32386 * 184.05425 * 9 7 6 11 11 N 1.44578 * 109.59682 * 288.73451 * 10 9 7 12 12 C 1.36936 * 118.63867 * 270.69617 * 11 10 9 13 13 H 1.08001 * 119.99475 * 136.24608 * 12 11 10 14 14 C 1.38812 * 120.00771 * 316.24955 * 12 11 10 15 15 N 1.31611 * 120.00177 * 158.88357 * 14 12 11 16 16 Si 1.86800 * 119.99393 * 338.88614 * 14 12 11 17 17 H 1.48499 * 109.47346 * 95.26603 * 16 14 12 18 18 H 1.48501 * 109.46630 * 215.26654 * 16 14 12 19 19 H 1.48496 * 109.47487 * 335.26610 * 16 14 12 20 20 C 1.47602 * 122.71518 * 90.72905 * 11 10 9 21 21 C 1.53954 * 112.13968 * 317.86091 * 20 11 10 22 22 C 1.53003 * 109.36530 * 79.62714 * 21 20 11 23 23 C 1.52997 * 109.36790 * 199.37287 * 21 20 11 24 24 C 1.51038 * 109.96752 * 319.42189 * 21 20 11 25 25 N 1.46504 * 109.46778 * 239.99971 * 2 1 3 26 26 C 1.36336 * 125.63800 * 299.69482 * 25 2 1 27 27 C 1.34850 * 108.21844 * 179.83105 * 26 25 2 28 28 C 1.40891 * 107.41809 * 0.42182 * 27 26 25 29 29 C 1.34856 * 107.41476 * 359.73958 * 28 27 26 30 30 H 1.09004 * 109.47133 * 299.99502 * 1 2 3 31 31 H 1.09003 * 109.47225 * 179.97438 * 1 2 3 32 32 H 1.08998 * 109.47292 * 59.99511 * 1 2 3 33 33 H 0.97003 * 120.00490 * 0.02562 * 6 4 2 34 34 H 1.08995 * 109.32899 * 304.31401 * 9 7 6 35 35 H 1.09008 * 109.33127 * 63.96689 * 9 7 6 36 36 H 1.09003 * 109.44441 * 48.76871 * 10 9 7 37 37 H 1.08999 * 109.44995 * 168.71440 * 10 9 7 38 38 H 0.97003 * 119.99622 * 180.02562 * 15 14 12 39 39 H 1.09000 * 108.94998 * 78.54369 * 20 11 10 40 40 H 1.08991 * 108.94702 * 197.17947 * 20 11 10 41 41 H 1.09002 * 109.46835 * 60.20542 * 22 21 20 42 42 H 1.09003 * 109.46737 * 180.20178 * 22 21 20 43 43 H 1.08998 * 109.47210 * 300.20251 * 22 21 20 44 44 H 1.09001 * 109.46902 * 59.99804 * 23 21 20 45 45 H 1.08999 * 109.47472 * 179.97438 * 23 21 20 46 46 H 1.09003 * 109.47223 * 300.00157 * 23 21 20 47 47 H 1.08998 * 109.64017 * 332.05584 * 24 21 20 48 48 H 1.09006 * 109.41898 * 211.93791 * 24 21 20 49 49 H 1.08001 * 125.89469 * 359.95911 * 26 25 2 50 50 H 1.08006 * 126.29112 * 180.16539 * 27 26 25 51 51 H 1.08000 * 126.29310 * 179.73457 * 28 27 26 52 52 H 1.07999 * 125.88985 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0275 0.0000 4 6 2.0324 -0.7105 1.2304 5 8 2.7296 -1.6966 1.1191 6 7 1.7068 -0.2501 2.4545 7 6 2.1956 -0.9405 3.6507 8 1 2.2260 -2.0101 3.4434 9 6 3.5644 -0.4797 3.9292 10 6 4.1607 -1.2585 5.1278 11 7 3.5111 -0.8396 6.3496 12 6 4.0361 0.2184 7.0426 13 1 3.3825 0.9798 7.4421 14 6 5.4080 0.3124 7.2317 15 7 5.9559 1.4764 7.5092 16 14 6.4766 -1.2134 7.0921 17 1 7.0350 -1.3028 5.7190 18 1 7.5877 -1.1310 8.0739 19 1 5.6568 -2.4194 7.3725 20 6 2.3061 -1.5058 6.8813 21 6 1.2900 -1.8377 5.7733 22 6 1.7315 -3.1083 5.0441 23 6 -0.0874 -2.0645 6.3993 24 6 1.2093 -0.6953 4.7885 25 7 2.0183 -0.6906 -1.1962 26 6 1.7655 -1.9902 -1.5220 27 6 2.3798 -2.2586 -2.6921 28 6 3.0439 -1.0845 -3.0988 29 6 2.8054 -0.1416 -2.1647 30 1 -0.3633 0.5138 0.8901 31 1 -0.3634 -1.0277 -0.0005 32 1 -0.3634 0.5139 -0.8899 33 1 1.1489 0.5384 2.5436 34 1 4.1859 -0.6418 3.0486 35 1 3.5457 0.5840 4.1668 36 1 4.0031 -2.3270 4.9808 37 1 5.2293 -1.0553 5.1971 38 1 6.9147 1.5420 7.6410 39 1 2.6024 -2.4297 7.3780 40 1 1.8320 -0.8498 7.6112 41 1 1.7774 -3.9360 5.7520 42 1 1.0150 -3.3429 4.2568 43 1 2.7163 -2.9513 4.6043 44 1 -0.4015 -1.1617 6.9231 45 1 -0.8083 -2.2992 5.6162 46 1 -0.0339 -2.8938 7.1047 47 1 1.4583 0.2395 5.2907 48 1 0.1979 -0.6343 4.3864 49 1 1.1736 -2.6843 -0.9439 50 1 2.3685 -3.2017 -3.2184 51 1 3.6354 -0.9622 -3.9942 52 1 3.1746 0.8732 -2.1808 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001089363107.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:56:24 Heat of formation + Delta-G solvation = 35.133913 kcal Electronic energy + Delta-G solvation = -30684.033810 eV Core-core repulsion = 26878.081264 eV Total energy + Delta-G solvation = -3805.952546 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 333.216 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -42.37243 -41.40529 -39.86318 -36.52157 -36.00307 -35.30595 -33.67140 -32.39381 -30.23657 -29.60027 -29.00039 -28.24809 -27.51514 -26.05601 -25.37487 -23.58193 -22.26662 -21.49082 -21.27933 -20.67978 -19.47357 -18.80363 -18.47023 -18.02726 -17.63339 -16.93545 -16.36006 -16.22496 -15.70259 -15.42312 -15.27803 -15.09747 -14.83156 -14.50602 -14.44191 -14.24231 -14.19318 -14.01070 -13.81139 -13.40855 -13.28267 -13.21784 -13.05191 -13.01343 -12.95484 -12.85429 -12.64530 -12.59793 -12.40587 -12.18526 -12.05112 -11.86704 -11.69493 -11.51006 -11.23131 -10.93200 -10.87931 -10.64053 -10.08360 -9.50972 -9.00061 -8.62423 -8.22595 -5.64964 1.27201 1.28338 1.35870 1.46506 1.49888 1.86725 2.19121 2.29195 2.39058 3.04129 3.36306 3.48845 3.68966 3.80350 3.81731 3.93392 4.03891 4.10734 4.13709 4.30513 4.35924 4.38895 4.57800 4.59557 4.63135 4.64277 4.69166 4.75821 4.77906 4.79019 4.82086 4.93789 4.95381 5.04531 5.08615 5.10292 5.13095 5.19714 5.27674 5.36772 5.41074 5.42329 5.44021 5.48425 5.60362 5.61772 5.97273 6.12127 6.20617 6.33643 6.39701 6.58605 7.06130 7.17244 7.65632 8.05612 8.96204 Molecular weight = 333.22amu Principal moments of inertia in cm(-1) A = 0.013828 B = 0.003518 C = 0.003128 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2024.438701 B = 7956.724980 C = 8949.490776 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.115 3.885 3 H 0.146 0.854 4 C 0.497 3.503 5 O -0.568 6.568 6 N -0.707 5.707 7 C 0.150 3.850 8 H 0.090 0.910 9 C -0.135 4.135 10 C 0.142 3.858 11 N -0.606 5.606 12 C -0.255 4.255 13 H 0.045 0.955 14 C -0.008 4.008 15 N -0.944 5.944 16 Si 0.930 3.070 17 H -0.286 1.286 18 H -0.306 1.306 19 H -0.260 1.260 20 C 0.153 3.847 21 C -0.072 4.072 22 C -0.153 4.153 23 C -0.128 4.128 24 C -0.093 4.093 25 N -0.436 5.436 26 C 0.002 3.998 27 C -0.229 4.229 28 C -0.218 4.218 29 C -0.026 4.026 30 H 0.105 0.895 31 H 0.062 0.938 32 H 0.087 0.913 33 H 0.413 0.587 34 H 0.040 0.960 35 H 0.048 0.952 36 H 0.062 0.938 37 H 0.023 0.977 38 H 0.262 0.738 39 H 0.017 0.983 40 H 0.052 0.948 41 H 0.057 0.943 42 H 0.066 0.934 43 H 0.053 0.947 44 H 0.057 0.943 45 H 0.072 0.928 46 H 0.059 0.941 47 H 0.057 0.943 48 H 0.093 0.907 49 H 0.155 0.845 50 H 0.140 0.860 51 H 0.146 0.854 52 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.862 -3.975 -15.600 23.312 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.009 3.991 3 H 0.164 0.836 4 C 0.283 3.717 5 O -0.446 6.446 6 N -0.359 5.359 7 C 0.046 3.954 8 H 0.108 0.892 9 C -0.176 4.176 10 C 0.015 3.985 11 N -0.329 5.329 12 C -0.385 4.385 13 H 0.062 0.938 14 C -0.206 4.206 15 N -0.588 5.588 16 Si 0.759 3.241 17 H -0.213 1.213 18 H -0.234 1.234 19 H -0.185 1.185 20 C 0.029 3.971 21 C -0.073 4.073 22 C -0.210 4.210 23 C -0.185 4.185 24 C -0.131 4.131 25 N -0.112 5.112 26 C -0.128 4.128 27 C -0.253 4.253 28 C -0.242 4.242 29 C -0.155 4.155 30 H 0.124 0.876 31 H 0.081 0.919 32 H 0.106 0.894 33 H 0.250 0.750 34 H 0.058 0.942 35 H 0.067 0.933 36 H 0.079 0.921 37 H 0.041 0.959 38 H 0.071 0.929 39 H 0.035 0.965 40 H 0.070 0.930 41 H 0.076 0.924 42 H 0.085 0.915 43 H 0.071 0.929 44 H 0.076 0.924 45 H 0.091 0.909 46 H 0.078 0.922 47 H 0.076 0.924 48 H 0.111 0.889 49 H 0.172 0.828 50 H 0.158 0.842 51 H 0.164 0.836 52 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges -16.389 -4.448 -15.308 22.863 hybrid contribution 1.423 -0.035 0.350 1.466 sum -14.966 -4.482 -14.957 21.629 Atomic orbital electron populations 1.22127 0.88756 1.04127 1.05736 1.21524 0.98582 0.97750 0.81224 0.83643 1.21133 0.80139 0.84760 0.85715 1.90761 1.38896 1.28027 1.86952 1.46195 1.52822 1.32211 1.04681 1.20122 0.92553 0.98318 0.84360 0.89205 1.21534 0.97292 1.00993 0.97768 1.21172 0.94620 0.96753 0.85914 1.43888 1.30623 1.36215 1.22166 1.18668 0.90380 0.99140 1.30290 0.93758 1.26085 0.98693 0.97825 0.97959 1.69963 1.11445 1.24633 1.52710 0.86033 0.78569 0.83236 0.76212 1.21330 1.23387 1.18453 1.21524 0.86175 0.94993 0.94374 1.20648 0.96344 0.94928 0.95419 1.22323 1.01295 0.96974 1.00384 1.21789 0.93836 1.01964 1.00948 1.21258 0.98388 0.99043 0.94441 1.43912 1.39825 1.10261 1.17247 1.21761 1.06321 0.86264 0.98485 1.21115 1.05601 0.99991 0.98623 1.21141 1.06907 0.93995 1.02161 1.22259 1.00907 1.00975 0.91338 0.87607 0.91937 0.89384 0.74997 0.94165 0.93314 0.92050 0.95911 0.92938 0.96515 0.92955 0.92380 0.91498 0.92863 0.92361 0.90858 0.92235 0.92379 0.88881 0.82752 0.84221 0.83637 0.79994 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.56 9.14 71.98 0.66 -0.90 16 2 C 0.12 1.96 3.36 44.24 0.15 2.11 16 3 H 0.15 1.77 8.06 -2.39 -0.02 1.75 16 4 C 0.50 12.28 6.89 87.66 0.60 12.89 16 5 O -0.57 -19.75 14.76 -3.04 -0.04 -19.80 16 6 N -0.71 -15.57 4.81 -452.05 -2.17 -17.74 16 7 C 0.15 4.32 1.77 43.01 0.08 4.40 16 8 H 0.09 2.79 4.02 -2.39 -0.01 2.79 16 9 C -0.13 -5.11 5.17 29.39 0.15 -4.95 16 10 C 0.14 6.11 4.41 87.38 0.39 6.50 16 11 N -0.61 -27.14 1.74 -698.36 -1.21 -28.35 16 12 C -0.25 -13.90 9.65 84.03 0.81 -13.09 16 13 H 0.04 2.66 8.06 -2.91 -0.02 2.63 16 14 C -0.01 -0.49 5.25 84.86 0.45 -0.04 16 15 N -0.94 -58.31 13.97 21.65 0.30 -58.00 16 16 Si 0.93 47.07 25.26 68.60 1.73 48.80 16 17 H -0.29 -14.32 6.74 99.48 0.67 -13.65 16 18 H -0.31 -15.57 7.11 99.48 0.71 -14.87 16 19 H -0.26 -12.66 7.11 99.48 0.71 -11.96 16 20 C 0.15 5.57 5.13 86.49 0.44 6.02 16 21 C -0.07 -1.91 0.75 -52.50 -0.04 -1.95 16 22 C -0.15 -4.01 6.76 71.98 0.49 -3.52 16 23 C -0.13 -2.57 8.15 71.98 0.59 -1.98 16 24 C -0.09 -2.40 4.38 29.81 0.13 -2.27 16 25 N -0.44 -9.75 2.40 -505.92 -1.22 -10.96 16 26 C 0.00 0.04 9.56 83.21 0.80 0.84 16 27 C -0.23 -5.68 10.86 22.14 0.24 -5.44 16 28 C -0.22 -5.06 10.86 22.14 0.24 -4.82 16 29 C -0.03 -0.56 11.39 83.21 0.95 0.38 16 30 H 0.11 0.59 7.56 -2.38 -0.02 0.57 16 31 H 0.06 0.79 7.92 -2.39 -0.02 0.77 16 32 H 0.09 0.77 8.14 -2.39 -0.02 0.75 16 33 H 0.41 6.21 8.00 -92.71 -0.74 5.46 16 34 H 0.04 1.60 7.67 -2.39 -0.02 1.59 16 35 H 0.05 2.04 8.14 -2.38 -0.02 2.02 16 36 H 0.06 2.46 5.22 -2.39 -0.01 2.44 16 37 H 0.02 1.12 3.80 -2.39 -0.01 1.11 16 38 H 0.26 15.46 8.31 -92.71 -0.77 14.69 16 39 H 0.02 0.62 7.98 -2.39 -0.02 0.60 16 40 H 0.05 1.95 7.71 -2.39 -0.02 1.93 16 41 H 0.06 1.44 8.13 -2.39 -0.02 1.42 16 42 H 0.07 1.51 7.90 -2.39 -0.02 1.49 16 43 H 0.05 1.66 3.16 -2.39 -0.01 1.65 16 44 H 0.06 1.16 8.12 -2.39 -0.02 1.14 16 45 H 0.07 1.17 8.08 -2.39 -0.02 1.15 16 46 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 47 H 0.06 1.82 7.48 -2.39 -0.02 1.81 16 48 H 0.09 1.75 7.63 -2.38 -0.02 1.73 16 49 H 0.16 3.63 8.06 -2.91 -0.02 3.60 16 50 H 0.14 3.03 8.06 -2.91 -0.02 3.00 16 51 H 0.15 2.82 8.06 -2.91 -0.02 2.79 16 52 H 0.18 2.83 8.06 -2.91 -0.02 2.80 16 Total: -1.00 -74.18 388.84 4.63 -69.55 By element: Atomic # 1 Polarization: 22.22 SS G_CDS: 0.13 Total: 22.35 kcal Atomic # 6 Polarization: -12.96 SS G_CDS: 7.11 Total: -5.85 kcal Atomic # 7 Polarization: -110.76 SS G_CDS: -4.30 Total: -115.06 kcal Atomic # 8 Polarization: -19.75 SS G_CDS: -0.04 Total: -19.80 kcal Atomic # 14 Polarization: 47.07 SS G_CDS: 1.73 Total: 48.80 kcal Total: -74.18 4.63 -69.55 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001089363107.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.682 kcal (2) G-P(sol) polarization free energy of solvation -74.183 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.499 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.635 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.549 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.134 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds