Wall clock time and date at job start Tue Mar 31 2020 17:56:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08995 * 109.47261 * 2 1 4 4 C 1.50691 * 109.47322 * 239.99907 * 2 1 3 5 5 O 1.21287 * 120.00126 * 240.00665 * 4 2 1 6 6 N 1.34779 * 120.00091 * 59.72502 * 4 2 1 7 7 C 1.46501 * 119.99810 * 180.28090 * 6 4 2 8 8 H 1.08991 * 110.21865 * 36.92873 * 7 6 4 9 9 C 1.52529 * 110.24719 * 274.99411 * 7 6 4 10 10 C 1.46237 * 114.27914 * 151.61791 * 9 7 6 11 11 N 1.50177 * 107.52848 * 58.41484 * 10 9 7 12 12 C 1.36940 * 120.53835 * 109.56357 * 11 10 9 13 13 H 1.07996 * 119.99706 * 156.67873 * 12 11 10 14 14 C 1.38816 * 119.99984 * 336.68650 * 12 11 10 15 15 N 1.31623 * 119.99692 * 340.41067 * 14 12 11 16 16 Si 1.86797 * 119.99817 * 160.41171 * 14 12 11 17 17 H 1.48499 * 109.47444 * 359.97438 * 16 14 12 18 18 H 1.48500 * 109.46942 * 120.00130 * 16 14 12 19 19 H 1.48498 * 109.46901 * 239.99563 * 16 14 12 20 20 C 1.43436 * 118.92381 * 289.58946 * 11 10 9 21 21 C 1.54903 * 116.07744 * 91.56805 * 20 11 10 22 22 C 1.53001 * 109.35944 * 78.84653 * 21 20 11 23 23 C 1.53007 * 109.35409 * 198.56829 * 21 20 11 24 24 C 1.50127 * 110.24801 * 159.01960 * 7 6 4 25 25 N 1.46500 * 109.46592 * 119.99597 * 2 1 3 26 26 C 1.36340 * 125.63485 * 59.70196 * 25 2 1 27 27 C 1.34855 * 108.21831 * 179.82598 * 26 25 2 28 28 C 1.40890 * 107.41594 * 0.41838 * 27 26 25 29 29 C 1.34847 * 107.41567 * 359.73659 * 28 27 26 30 30 H 1.09001 * 109.47231 * 300.00431 * 1 2 3 31 31 H 1.09004 * 109.46897 * 59.99809 * 1 2 3 32 32 H 1.08995 * 109.47261 * 179.97438 * 1 2 3 33 33 H 0.96992 * 119.99949 * 0.27333 * 6 4 2 34 34 H 1.09001 * 108.52726 * 272.86894 * 9 7 6 35 35 H 1.09002 * 108.51838 * 30.38578 * 9 7 6 36 36 H 1.08995 * 109.84801 * 177.91675 * 10 9 7 37 37 H 1.08997 * 109.85196 * 298.84512 * 10 9 7 38 38 H 0.97000 * 119.99448 * 180.02562 * 15 14 12 39 39 H 1.09004 * 108.15748 * 213.27972 * 20 11 10 40 40 H 1.08993 * 108.15890 * 329.85031 * 20 11 10 41 41 H 1.08997 * 109.47015 * 59.99711 * 22 21 20 42 42 H 1.09001 * 109.46955 * 179.97438 * 22 21 20 43 43 H 1.08997 * 109.46986 * 299.99239 * 22 21 20 44 44 H 1.09000 * 109.46787 * 60.00594 * 23 21 20 45 45 H 1.09006 * 109.46728 * 179.97438 * 23 21 20 46 46 H 1.08996 * 109.47309 * 300.00078 * 23 21 20 47 47 H 1.08999 * 109.20967 * 336.99531 * 24 7 6 48 48 H 1.09007 * 109.21111 * 96.30875 * 24 7 6 49 49 H 1.08002 * 125.89330 * 359.95052 * 26 25 2 50 50 H 1.07998 * 126.29241 * 180.16156 * 27 26 25 51 51 H 1.08005 * 126.29027 * 179.73468 * 28 27 26 52 52 H 1.08003 * 125.89194 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7104 -1.2304 5 8 2.7296 -1.6966 -1.1191 6 7 1.7022 -0.2532 -2.4545 7 6 2.1856 -0.9475 -3.6506 8 1 2.1949 -2.0244 -3.4831 9 6 3.5831 -0.4580 -4.0165 10 6 4.4038 -1.4481 -4.7128 11 7 3.6718 -1.8437 -5.9629 12 6 4.1366 -1.4596 -7.1925 13 1 3.8639 -2.0225 -8.0728 14 6 4.9583 -0.3466 -7.3072 15 7 4.9866 0.5523 -6.3462 16 14 6.0238 -0.1250 -8.8253 17 1 5.8108 -1.2667 -9.7507 18 1 5.6556 1.1415 -9.5078 19 1 7.4526 -0.0736 -8.4240 20 6 2.4777 -2.6300 -5.8483 21 6 1.1485 -1.8400 -5.7557 22 6 0.7388 -1.3709 -7.1532 23 6 0.0573 -2.7485 -5.1855 24 6 1.3226 -0.6097 -4.8317 25 7 2.0182 -0.6905 1.1963 26 6 1.7558 -1.9867 1.5279 27 6 2.3798 -2.2586 2.6921 28 6 3.0440 -1.0845 3.0988 29 6 2.8054 -0.1417 2.1647 30 1 -0.3634 0.5139 0.8899 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3633 -1.0276 -0.0005 33 1 1.1446 0.5354 -2.5435 34 1 3.4865 0.4213 -4.6533 35 1 4.0974 -0.1638 -3.1016 36 1 5.3691 -1.0128 -4.9712 37 1 4.5501 -2.3209 -4.0766 38 1 5.5605 1.3302 -6.4266 39 1 2.4210 -3.2899 -6.7140 40 1 2.5654 -3.2530 -4.9582 41 1 0.6039 -2.2364 -7.8019 42 1 -0.1967 -0.8151 -7.0902 43 1 1.5172 -0.7274 -7.5631 44 1 0.3496 -3.0876 -4.1917 45 1 -0.8789 -2.1942 -5.1191 46 1 -0.0760 -3.6105 -5.8391 47 1 0.3438 -0.2844 -4.4794 48 1 1.7871 0.1993 -5.3957 49 1 1.1539 -2.6773 0.9558 50 1 2.3687 -3.2016 3.2183 51 1 3.6355 -0.9622 3.9942 52 1 3.1740 0.8734 2.1811 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001089363109.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:56:28 Heat of formation + Delta-G solvation = 26.339557 kcal Electronic energy + Delta-G solvation = -30766.511074 eV Core-core repulsion = 26960.177177 eV Total energy + Delta-G solvation = -3806.333898 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 333.216 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -42.32388 -41.06069 -39.63056 -36.28541 -35.96460 -35.27695 -33.25185 -32.29604 -30.23731 -29.58962 -29.00788 -28.04682 -27.32335 -25.78433 -25.01414 -23.36525 -22.13767 -21.57411 -21.30257 -20.63901 -19.53229 -18.61495 -18.54047 -17.90378 -17.07445 -16.86794 -16.18993 -15.93046 -15.60613 -15.27738 -15.23586 -15.03164 -14.83577 -14.45625 -14.37690 -14.16674 -13.86821 -13.53003 -13.39802 -13.31395 -13.21273 -13.07346 -13.02096 -12.94370 -12.88979 -12.70519 -12.59893 -12.50847 -12.34693 -12.27165 -11.92300 -11.70497 -11.52443 -11.42324 -11.15353 -11.03060 -10.86491 -10.49553 -9.95365 -9.49740 -8.98857 -8.64206 -7.80823 -5.20013 1.29736 1.45449 1.50745 1.51850 1.57853 1.88411 2.20363 2.31331 2.54783 3.32648 3.49925 3.56822 3.81136 3.82240 3.97307 4.04966 4.07547 4.14961 4.39971 4.42482 4.46644 4.52733 4.58807 4.65276 4.72800 4.77326 4.78368 4.82207 4.87715 4.93833 4.95437 5.05572 5.09811 5.11594 5.20072 5.26180 5.29346 5.34446 5.42230 5.45283 5.46379 5.53318 5.62396 5.68306 5.71105 5.79991 6.06022 6.13535 6.34712 6.42269 6.43261 6.61023 7.17758 7.21430 7.91099 8.43779 9.24052 Molecular weight = 333.22amu Principal moments of inertia in cm(-1) A = 0.015912 B = 0.003340 C = 0.003009 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1759.275897 B = 8382.013940 C = 9301.914444 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.117 3.883 3 H 0.149 0.851 4 C 0.497 3.503 5 O -0.569 6.569 6 N -0.701 5.701 7 C 0.165 3.835 8 H 0.065 0.935 9 C -0.114 4.114 10 C 0.174 3.826 11 N -0.595 5.595 12 C -0.245 4.245 13 H 0.062 0.938 14 C -0.040 4.040 15 N -0.916 5.916 16 Si 0.950 3.050 17 H -0.274 1.274 18 H -0.294 1.294 19 H -0.298 1.298 20 C 0.163 3.837 21 C -0.084 4.084 22 C -0.122 4.122 23 C -0.127 4.127 24 C -0.090 4.090 25 N -0.436 5.436 26 C -0.001 4.001 27 C -0.228 4.228 28 C -0.217 4.217 29 C -0.025 4.025 30 H 0.090 0.910 31 H 0.105 0.895 32 H 0.060 0.940 33 H 0.414 0.586 34 H 0.081 0.919 35 H 0.013 0.987 36 H 0.058 0.942 37 H 0.000 1.000 38 H 0.245 0.755 39 H 0.028 0.972 40 H 0.025 0.975 41 H 0.049 0.951 42 H 0.059 0.941 43 H 0.034 0.966 44 H 0.043 0.957 45 H 0.069 0.931 46 H 0.057 0.943 47 H 0.078 0.922 48 H 0.050 0.950 49 H 0.152 0.848 50 H 0.140 0.860 51 H 0.147 0.853 52 H 0.185 0.815 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.983 2.064 12.739 19.028 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.011 3.989 3 H 0.166 0.834 4 C 0.282 3.718 5 O -0.448 6.448 6 N -0.352 5.352 7 C 0.061 3.939 8 H 0.083 0.917 9 C -0.154 4.154 10 C 0.050 3.950 11 N -0.317 5.317 12 C -0.375 4.375 13 H 0.080 0.920 14 C -0.236 4.236 15 N -0.562 5.562 16 Si 0.781 3.219 17 H -0.199 1.199 18 H -0.221 1.221 19 H -0.225 1.225 20 C 0.035 3.965 21 C -0.088 4.088 22 C -0.179 4.179 23 C -0.184 4.184 24 C -0.128 4.128 25 N -0.112 5.112 26 C -0.131 4.131 27 C -0.253 4.253 28 C -0.242 4.242 29 C -0.154 4.154 30 H 0.109 0.891 31 H 0.123 0.877 32 H 0.079 0.921 33 H 0.251 0.749 34 H 0.099 0.901 35 H 0.032 0.968 36 H 0.076 0.924 37 H 0.019 0.981 38 H 0.055 0.945 39 H 0.046 0.954 40 H 0.043 0.957 41 H 0.068 0.932 42 H 0.078 0.922 43 H 0.054 0.946 44 H 0.062 0.938 45 H 0.088 0.912 46 H 0.076 0.924 47 H 0.097 0.903 48 H 0.069 0.931 49 H 0.170 0.830 50 H 0.158 0.842 51 H 0.165 0.835 52 H 0.202 0.798 Dipole moment (debyes) X Y Z Total from point charges -13.498 1.661 12.480 18.459 hybrid contribution 1.153 0.439 -0.996 1.586 sum -12.345 2.099 11.484 16.991 Atomic orbital electron populations 1.22132 0.88747 1.04080 1.05803 1.21512 0.98556 0.97757 0.81058 0.83375 1.21197 0.80115 0.84792 0.85714 1.90772 1.38911 1.28114 1.86973 1.46003 1.52698 1.32018 1.04529 1.20059 0.94046 0.95945 0.83847 0.91698 1.21086 0.95045 1.01741 0.97536 1.19884 0.96430 0.93268 0.85426 1.44273 1.23164 1.62003 1.02222 1.19318 1.25803 1.06128 0.86261 0.92012 1.25412 1.03157 0.95325 0.99687 1.70098 1.40789 1.10427 1.34874 0.85467 0.78826 0.77142 0.80512 1.19917 1.22093 1.22546 1.20615 0.85912 0.92250 0.97738 1.21825 0.96436 0.95526 0.95028 1.21649 1.00090 1.00486 0.95669 1.21759 0.97596 0.99179 0.99892 1.21614 0.98660 0.98305 0.94252 1.43902 1.39698 1.10450 1.17173 1.21755 1.06242 0.86458 0.98616 1.21115 1.05376 1.00020 0.98755 1.21141 1.06978 0.93861 1.02205 1.22280 1.00933 1.01009 0.91129 0.89104 0.87651 0.92111 0.74897 0.90082 0.96829 0.92375 0.98145 0.94526 0.95393 0.95706 0.93192 0.92162 0.94636 0.93763 0.91172 0.92416 0.90328 0.93112 0.83005 0.84215 0.83480 0.79803 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.84 9.13 71.98 0.66 -1.18 16 2 C 0.12 2.23 3.36 44.24 0.15 2.38 16 3 H 0.15 2.01 8.06 -2.39 -0.02 1.99 16 4 C 0.50 13.95 6.97 87.65 0.61 14.56 16 5 O -0.57 -22.28 15.19 -3.05 -0.05 -22.33 16 6 N -0.70 -18.10 4.90 -447.72 -2.19 -20.29 16 7 C 0.17 5.69 2.10 43.91 0.09 5.78 16 8 H 0.06 2.55 5.28 -2.39 -0.01 2.54 16 9 C -0.11 -4.96 4.73 28.36 0.13 -4.82 16 10 C 0.17 8.57 5.25 83.58 0.44 9.01 16 11 N -0.60 -28.75 2.60 -707.82 -1.84 -30.59 16 12 C -0.24 -12.86 8.94 84.03 0.75 -12.11 16 13 H 0.06 3.26 7.89 -2.91 -0.02 3.23 16 14 C -0.04 -2.13 4.91 84.86 0.42 -1.71 16 15 N -0.92 -50.10 9.43 21.65 0.20 -49.90 16 16 Si 0.95 44.06 29.60 68.60 2.03 46.09 16 17 H -0.27 -12.37 7.11 99.48 0.71 -11.67 16 18 H -0.29 -13.58 7.11 99.48 0.71 -12.87 16 19 H -0.30 -14.10 7.11 99.48 0.71 -13.39 16 20 C 0.16 6.61 4.00 87.60 0.35 6.96 16 21 C -0.08 -2.75 0.77 -50.90 -0.04 -2.79 16 22 C -0.12 -3.95 8.29 71.98 0.60 -3.35 16 23 C -0.13 -3.24 8.20 71.98 0.59 -2.65 16 24 C -0.09 -2.89 4.14 30.30 0.13 -2.76 16 25 N -0.44 -10.52 2.40 -505.93 -1.21 -11.73 16 26 C 0.00 -0.02 9.57 83.21 0.80 0.78 16 27 C -0.23 -6.02 10.86 22.14 0.24 -5.78 16 28 C -0.22 -5.30 10.86 22.14 0.24 -5.06 16 29 C -0.02 -0.57 11.39 83.21 0.95 0.38 16 30 H 0.09 0.90 8.14 -2.39 -0.02 0.88 16 31 H 0.10 0.78 7.55 -2.38 -0.02 0.76 16 32 H 0.06 0.90 7.91 -2.39 -0.02 0.88 16 33 H 0.41 7.45 7.86 -92.71 -0.73 6.72 16 34 H 0.08 3.92 5.29 -2.39 -0.01 3.90 16 35 H 0.01 0.59 7.90 -2.39 -0.02 0.57 16 36 H 0.06 3.23 6.05 -2.39 -0.01 3.21 16 37 H 0.00 0.02 8.13 -2.39 -0.02 0.00 16 38 H 0.25 13.26 8.31 -92.71 -0.77 12.49 16 39 H 0.03 1.15 7.84 -2.38 -0.02 1.13 16 40 H 0.02 1.01 6.68 -2.39 -0.02 0.99 16 41 H 0.05 1.53 8.13 -2.39 -0.02 1.51 16 42 H 0.06 1.63 8.14 -2.39 -0.02 1.61 16 43 H 0.03 1.41 7.45 -2.39 -0.02 1.40 16 44 H 0.04 1.17 7.56 -2.39 -0.02 1.15 16 45 H 0.07 1.48 8.12 -2.38 -0.02 1.46 16 46 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16 47 H 0.08 1.93 7.63 -2.39 -0.02 1.92 16 48 H 0.05 2.00 6.66 -2.38 -0.02 1.98 16 49 H 0.15 3.95 8.06 -2.91 -0.02 3.92 16 50 H 0.14 3.24 8.06 -2.91 -0.02 3.21 16 51 H 0.15 2.96 8.06 -2.91 -0.02 2.94 16 52 H 0.18 2.99 8.06 -2.91 -0.02 2.96 16 Total: -1.00 -68.53 395.83 4.21 -64.32 By element: Atomic # 1 Polarization: 26.63 SS G_CDS: 0.17 Total: 26.80 kcal Atomic # 6 Polarization: -9.47 SS G_CDS: 7.10 Total: -2.37 kcal Atomic # 7 Polarization: -107.47 SS G_CDS: -5.04 Total: -112.51 kcal Atomic # 8 Polarization: -22.28 SS G_CDS: -0.05 Total: -22.33 kcal Atomic # 14 Polarization: 44.06 SS G_CDS: 2.03 Total: 46.09 kcal Total: -68.53 4.21 -64.32 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001089363109.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.657 kcal (2) G-P(sol) polarization free energy of solvation -68.526 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.131 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.208 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.317 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.340 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds