Wall clock time and date at job start Tue Mar 31 2020 17:56:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09005 * 109.46779 * 2 1 4 4 C 1.50699 * 109.47039 * 119.99859 * 2 1 3 5 5 O 1.21282 * 120.00135 * 120.00351 * 4 2 1 6 6 N 1.34780 * 120.00115 * 299.99930 * 4 2 1 7 7 C 1.46499 * 120.00148 * 179.97438 * 6 4 2 8 8 H 1.09001 * 110.20893 * 35.00576 * 7 6 4 9 9 C 1.52530 * 110.25032 * 273.06813 * 7 6 4 10 10 C 1.46238 * 114.27475 * 151.47489 * 9 7 6 11 11 N 1.50168 * 107.53140 * 58.41170 * 10 9 7 12 12 C 1.36936 * 120.53471 * 109.56444 * 11 10 9 13 13 H 1.08007 * 119.99905 * 210.94850 * 12 11 10 14 14 C 1.38813 * 120.00216 * 30.95925 * 12 11 10 15 15 N 1.31621 * 120.00004 * 19.71577 * 14 12 11 16 16 Si 1.86800 * 119.99711 * 199.72524 * 14 12 11 17 17 H 1.48506 * 109.47209 * 94.74090 * 16 14 12 18 18 H 1.48504 * 109.46850 * 214.73605 * 16 14 12 19 19 H 1.48493 * 109.47451 * 334.73808 * 16 14 12 20 20 C 1.43432 * 118.92356 * 289.58378 * 11 10 9 21 21 C 1.54911 * 116.07600 * 91.57110 * 20 11 10 22 22 C 1.53006 * 109.35869 * 78.84515 * 21 20 11 23 23 C 1.53000 * 109.35494 * 198.56608 * 21 20 11 24 24 C 1.50129 * 110.36870 * 157.01733 * 7 6 4 25 25 N 1.46498 * 109.47342 * 240.00227 * 2 1 3 26 26 C 1.36347 * 125.63059 * 299.69215 * 25 2 1 27 27 C 1.34855 * 108.21524 * 179.83210 * 26 25 2 28 28 C 1.40891 * 107.41648 * 0.42397 * 27 26 25 29 29 C 1.34853 * 107.41947 * 359.73647 * 28 27 26 30 30 H 1.09001 * 109.46744 * 60.00005 * 1 2 3 31 31 H 1.08995 * 109.46831 * 179.97438 * 1 2 3 32 32 H 1.09001 * 109.47390 * 300.00394 * 1 2 3 33 33 H 0.97004 * 119.99851 * 0.02562 * 6 4 2 34 34 H 1.08991 * 108.52453 * 272.72078 * 9 7 6 35 35 H 1.09005 * 108.51790 * 30.23558 * 9 7 6 36 36 H 1.09002 * 109.84395 * 177.92091 * 10 9 7 37 37 H 1.09004 * 109.84611 * 298.90069 * 10 9 7 38 38 H 0.97003 * 119.99494 * 180.02562 * 15 14 12 39 39 H 1.09006 * 108.15796 * 213.28301 * 20 11 10 40 40 H 1.08995 * 108.16327 * 329.85021 * 20 11 10 41 41 H 1.09000 * 109.47190 * 59.99688 * 22 21 20 42 42 H 1.08990 * 109.46968 * 179.97438 * 22 21 20 43 43 H 1.08997 * 109.46681 * 299.99747 * 22 21 20 44 44 H 1.09005 * 109.47161 * 60.00293 * 23 21 20 45 45 H 1.09003 * 109.47067 * 179.97438 * 23 21 20 46 46 H 1.08998 * 109.47549 * 299.99845 * 23 21 20 47 47 H 1.08998 * 109.21009 * 337.06369 * 24 7 6 48 48 H 1.08999 * 109.20749 * 96.37556 * 24 7 6 49 49 H 1.07995 * 125.89338 * 359.96002 * 26 25 2 50 50 H 1.07994 * 126.29142 * 180.16183 * 27 26 25 51 51 H 1.08000 * 126.29326 * 179.73290 * 28 27 26 52 52 H 1.08000 * 125.89619 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 8 2.7296 -1.6964 1.1193 6 7 1.7067 -0.2499 2.4546 7 6 2.1946 -0.9408 3.6508 8 1 3.1940 -1.3385 3.4746 9 6 1.2394 -2.0654 4.0374 10 6 1.8766 -3.1830 4.7326 11 7 2.5265 -2.6345 5.9702 12 6 2.0176 -2.9212 7.2088 13 1 2.1150 -2.2053 8.0116 14 6 1.3767 -4.1320 7.4325 15 7 1.5827 -5.1459 6.6188 16 14 0.2218 -4.3224 8.8884 17 1 -1.1734 -4.0634 8.4506 18 1 0.3242 -5.7037 9.4240 19 1 0.5965 -3.3516 9.9477 20 6 3.6888 -1.8051 5.8339 21 6 3.4298 -0.2810 5.7346 22 6 3.1591 0.2797 7.1322 23 6 4.6626 0.4053 5.1428 24 6 2.2068 -0.0061 4.8256 25 7 2.0184 -0.6905 -1.1962 26 6 1.7656 -1.9902 -1.5219 27 6 2.3800 -2.2587 -2.6919 28 6 3.0442 -1.0846 -3.0987 29 6 2.8055 -0.1416 -2.1646 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 -0.3634 0.5139 0.8899 33 1 1.1487 0.5386 2.5436 34 1 0.4629 -1.6539 4.6822 35 1 0.7669 -2.4451 3.1314 36 1 1.1262 -3.9247 5.0064 37 1 2.6300 -3.6378 4.0894 38 1 1.1345 -5.9919 6.7751 39 1 4.3366 -1.9843 6.6921 40 1 4.2260 -2.1175 4.9386 41 1 4.0239 0.0979 7.7704 42 1 2.9771 1.3521 7.0645 43 1 2.2840 -0.2116 7.5575 44 1 4.8600 0.0037 4.1489 45 1 4.4822 1.4779 5.0716 46 1 5.5236 0.2232 5.7859 47 1 2.2513 1.0218 4.4657 48 1 1.2926 -0.1438 5.4030 49 1 1.1737 -2.6842 -0.9437 50 1 2.3688 -3.2017 -3.2181 51 1 3.6357 -0.9622 -3.9939 52 1 3.1746 0.8732 -2.1807 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001089363111.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:56:33 Heat of formation + Delta-G solvation = 39.497951 kcal Electronic energy + Delta-G solvation = -30554.922066 eV Core-core repulsion = 26749.158760 eV Total energy + Delta-G solvation = -3805.763307 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 333.216 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -41.39700 -39.85790 -38.30743 -34.83651 -34.45835 -34.37517 -31.79645 -30.57207 -29.34496 -28.66331 -27.67213 -26.87206 -25.56649 -24.91610 -23.47175 -22.00984 -20.84600 -20.42130 -20.11490 -19.63087 -18.26606 -17.52697 -16.93570 -16.61075 -15.79027 -15.28822 -15.04197 -14.71253 -14.32143 -14.06852 -13.80973 -13.69310 -13.59969 -13.49011 -13.25794 -12.88530 -12.64867 -12.50605 -12.37698 -12.28015 -12.05021 -11.99381 -11.81819 -11.78017 -11.53232 -11.26584 -11.15258 -11.03874 -10.80994 -10.65706 -10.34554 -10.25588 -10.15312 -9.78999 -9.71287 -9.65047 -9.45075 -8.83211 -8.57135 -8.40435 -8.05283 -6.62747 -5.79595 -3.25058 2.24157 2.53741 2.75101 3.15510 3.28265 3.35262 3.43412 3.44421 4.34649 4.48143 4.49489 4.57684 4.92113 5.05588 5.19189 5.21527 5.28021 5.30763 5.33631 5.40397 5.45382 5.58455 5.65636 5.68351 5.69949 5.78229 5.88518 6.01470 6.07855 6.15084 6.22241 6.32301 6.34813 6.36270 6.36890 6.37349 6.51101 6.64030 6.68225 6.70599 6.85440 6.97848 7.01151 7.05244 7.05934 7.27951 7.33048 7.34097 7.55704 7.67069 7.82805 8.21557 8.49188 9.16219 9.85753 10.42795 11.27450 Molecular weight = 333.22amu Principal moments of inertia in cm(-1) A = 0.015126 B = 0.003273 C = 0.002958 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1850.708616 B = 8552.889808 C = 9462.558011 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.114 3.886 3 H 0.119 0.881 4 C 0.497 3.503 5 O -0.512 6.512 6 N -0.717 5.717 7 C 0.148 3.852 8 H 0.094 0.906 9 C -0.135 4.135 10 C 0.151 3.849 11 N -0.580 5.580 12 C -0.251 4.251 13 H 0.066 0.934 14 C 0.005 3.995 15 N -0.894 5.894 16 Si 0.895 3.105 17 H -0.289 1.289 18 H -0.292 1.292 19 H -0.279 1.279 20 C 0.165 3.835 21 C -0.090 4.090 22 C -0.131 4.131 23 C -0.135 4.135 24 C -0.102 4.102 25 N -0.432 5.432 26 C 0.021 3.979 27 C -0.212 4.212 28 C -0.198 4.198 29 C -0.023 4.023 30 H 0.075 0.925 31 H 0.072 0.928 32 H 0.080 0.920 33 H 0.394 0.606 34 H 0.058 0.942 35 H 0.040 0.960 36 H 0.102 0.898 37 H 0.024 0.976 38 H 0.253 0.747 39 H 0.039 0.961 40 H 0.026 0.974 41 H 0.047 0.953 42 H 0.035 0.965 43 H 0.066 0.934 44 H 0.048 0.952 45 H 0.044 0.956 46 H 0.051 0.949 47 H 0.046 0.954 48 H 0.073 0.927 49 H 0.155 0.845 50 H 0.132 0.868 51 H 0.132 0.868 52 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.528 14.721 -13.029 19.718 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.007 3.993 3 H 0.137 0.863 4 C 0.280 3.720 5 O -0.386 6.386 6 N -0.368 5.368 7 C 0.045 3.955 8 H 0.112 0.888 9 C -0.175 4.175 10 C 0.027 3.973 11 N -0.300 5.300 12 C -0.381 4.381 13 H 0.084 0.916 14 C -0.194 4.194 15 N -0.537 5.537 16 Si 0.726 3.274 17 H -0.216 1.216 18 H -0.219 1.219 19 H -0.204 1.204 20 C 0.035 3.965 21 C -0.094 4.094 22 C -0.188 4.188 23 C -0.192 4.192 24 C -0.140 4.140 25 N -0.108 5.108 26 C -0.108 4.108 27 C -0.236 4.236 28 C -0.223 4.223 29 C -0.152 4.152 30 H 0.094 0.906 31 H 0.091 0.909 32 H 0.099 0.901 33 H 0.228 0.772 34 H 0.077 0.923 35 H 0.058 0.942 36 H 0.120 0.880 37 H 0.042 0.958 38 H 0.063 0.937 39 H 0.057 0.943 40 H 0.044 0.956 41 H 0.066 0.934 42 H 0.054 0.946 43 H 0.085 0.915 44 H 0.067 0.933 45 H 0.063 0.937 46 H 0.070 0.930 47 H 0.065 0.935 48 H 0.092 0.908 49 H 0.173 0.827 50 H 0.150 0.850 51 H 0.150 0.850 52 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -1.195 13.953 -12.766 18.949 hybrid contribution -0.903 0.314 0.833 1.268 sum -2.098 14.267 -11.933 18.717 Atomic orbital electron populations 1.22122 0.91333 1.04328 1.03814 1.21292 0.96739 0.97367 0.83863 0.86305 1.20512 0.81354 0.85473 0.84676 1.90813 1.36521 1.25183 1.86127 1.46235 1.53296 1.31649 1.05632 1.20482 0.99297 0.93326 0.82355 0.88838 1.21420 0.98799 0.98029 0.99219 1.20265 0.97453 0.93726 0.85867 1.43911 1.29230 1.54402 1.02470 1.19146 1.32222 0.98117 0.88584 0.91601 1.25037 1.01681 0.94845 0.97869 1.70032 1.43199 1.01279 1.39234 0.86383 0.81438 0.77068 0.82555 1.21599 1.21853 1.20382 1.20397 0.89650 0.87644 0.98761 1.21966 0.93156 1.00006 0.94227 1.21792 1.02195 0.98641 0.96171 1.21821 0.97935 0.99127 1.00367 1.21775 1.00161 0.96739 0.95282 1.43708 1.39949 1.10440 1.16748 1.21683 1.05547 0.85448 0.98150 1.20832 1.05262 0.99244 0.98248 1.20821 1.06375 0.93940 1.01128 1.21720 1.01822 0.99810 0.91807 0.90621 0.90937 0.90081 0.77228 0.92345 0.94165 0.88012 0.95760 0.93675 0.94289 0.95553 0.93369 0.94555 0.91517 0.93298 0.93658 0.92983 0.93519 0.90820 0.82731 0.84962 0.85005 0.82578 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.20 9.14 37.16 0.34 -0.86 16 2 C 0.11 1.13 3.36 -69.08 -0.23 0.90 16 3 H 0.12 0.85 8.06 -51.93 -0.42 0.43 16 4 C 0.50 6.80 7.04 -10.98 -0.08 6.72 16 5 O -0.51 -9.61 15.12 5.56 0.08 -9.52 16 6 N -0.72 -8.86 4.87 -55.44 -0.27 -9.13 16 7 C 0.15 2.38 2.13 -69.60 -0.15 2.23 16 8 H 0.09 1.79 5.20 -51.93 -0.27 1.51 16 9 C -0.13 -2.55 4.91 -30.19 -0.15 -2.70 16 10 C 0.15 3.53 5.37 -5.20 -0.03 3.50 16 11 N -0.58 -13.75 2.56 -175.07 -0.45 -14.20 16 12 C -0.25 -6.54 9.29 -15.06 -0.14 -6.68 16 13 H 0.07 1.69 6.70 -52.48 -0.35 1.34 16 14 C 0.00 0.13 4.93 -17.43 -0.09 0.04 16 15 N -0.89 -25.50 11.25 55.49 0.62 -24.88 16 16 Si 0.90 21.19 29.60 -169.99 -5.03 16.16 16 17 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 18 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 19 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 20 C 0.17 3.38 4.00 -4.66 -0.02 3.37 16 21 C -0.09 -1.45 0.77 -152.53 -0.12 -1.57 16 22 C -0.13 -2.07 8.28 37.16 0.31 -1.76 16 23 C -0.13 -1.89 8.20 37.16 0.30 -1.59 16 24 C -0.10 -1.52 4.15 -27.19 -0.11 -1.64 16 25 N -0.43 -5.29 2.40 -111.26 -0.27 -5.56 16 26 C 0.02 0.29 9.56 -16.74 -0.16 0.13 16 27 C -0.21 -2.80 10.86 -39.78 -0.43 -3.23 16 28 C -0.20 -2.42 10.86 -39.78 -0.43 -2.85 16 29 C -0.02 -0.27 11.39 -16.75 -0.19 -0.46 16 30 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.07 0.65 7.92 -51.93 -0.41 0.24 16 32 H 0.08 0.46 7.56 -51.93 -0.39 0.07 16 33 H 0.39 3.50 7.91 -40.82 -0.32 3.18 16 34 H 0.06 1.12 6.93 -51.93 -0.36 0.76 16 35 H 0.04 0.75 7.96 -51.93 -0.41 0.34 16 36 H 0.10 2.69 5.64 -51.93 -0.29 2.39 16 37 H 0.02 0.60 8.12 -51.93 -0.42 0.18 16 38 H 0.25 7.02 8.31 -40.82 -0.34 6.68 16 39 H 0.04 0.84 7.85 -51.93 -0.41 0.44 16 40 H 0.03 0.55 6.68 -51.93 -0.35 0.21 16 41 H 0.05 0.75 8.13 -51.93 -0.42 0.33 16 42 H 0.04 0.49 8.14 -51.93 -0.42 0.07 16 43 H 0.07 1.20 6.65 -51.93 -0.35 0.86 16 44 H 0.05 0.71 7.55 -51.93 -0.39 0.32 16 45 H 0.04 0.56 8.12 -51.93 -0.42 0.14 16 46 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 47 H 0.05 0.59 7.66 -51.93 -0.40 0.19 16 48 H 0.07 1.22 6.66 -51.93 -0.35 0.87 16 49 H 0.16 2.07 8.06 -52.49 -0.42 1.65 16 50 H 0.13 1.54 8.06 -52.49 -0.42 1.12 16 51 H 0.13 1.34 8.06 -52.49 -0.42 0.92 16 52 H 0.16 1.32 8.06 -52.49 -0.42 0.90 16 LS Contribution 397.62 15.07 5.99 5.99 Total: -1.00 -31.70 397.62 -9.52 -41.21 By element: Atomic # 1 Polarization: 15.19 SS G_CDS: -8.83 Total: 6.36 kcal Atomic # 6 Polarization: -5.06 SS G_CDS: -1.37 Total: -6.43 kcal Atomic # 7 Polarization: -53.41 SS G_CDS: -0.36 Total: -53.77 kcal Atomic # 8 Polarization: -9.61 SS G_CDS: 0.08 Total: -9.52 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.03 Total: 16.16 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -31.70 -9.52 -41.21 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001089363111.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.711 kcal (2) G-P(sol) polarization free energy of solvation -31.698 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.014 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.516 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.213 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.498 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds