Wall clock time and date at job start Tue Mar 31 2020 17:56:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09005 * 109.46779 * 2 1 4 4 C 1.50699 * 109.47039 * 119.99859 * 2 1 3 5 5 O 1.21282 * 120.00135 * 120.00351 * 4 2 1 6 6 N 1.34780 * 120.00115 * 299.99930 * 4 2 1 7 7 C 1.46499 * 120.00148 * 179.97438 * 6 4 2 8 8 H 1.09001 * 110.20893 * 35.00576 * 7 6 4 9 9 C 1.52530 * 110.25032 * 273.06813 * 7 6 4 10 10 C 1.46238 * 114.27475 * 151.47489 * 9 7 6 11 11 N 1.50168 * 107.53140 * 58.41170 * 10 9 7 12 12 C 1.36936 * 120.53471 * 109.56444 * 11 10 9 13 13 H 1.08007 * 119.99905 * 210.94850 * 12 11 10 14 14 C 1.38813 * 120.00216 * 30.95925 * 12 11 10 15 15 N 1.31621 * 120.00004 * 19.71577 * 14 12 11 16 16 Si 1.86800 * 119.99711 * 199.72524 * 14 12 11 17 17 H 1.48506 * 109.47209 * 94.74090 * 16 14 12 18 18 H 1.48504 * 109.46850 * 214.73605 * 16 14 12 19 19 H 1.48493 * 109.47451 * 334.73808 * 16 14 12 20 20 C 1.43432 * 118.92356 * 289.58378 * 11 10 9 21 21 C 1.54911 * 116.07600 * 91.57110 * 20 11 10 22 22 C 1.53006 * 109.35869 * 78.84515 * 21 20 11 23 23 C 1.53000 * 109.35494 * 198.56608 * 21 20 11 24 24 C 1.50129 * 110.36870 * 157.01733 * 7 6 4 25 25 N 1.46498 * 109.47342 * 240.00227 * 2 1 3 26 26 C 1.36347 * 125.63059 * 299.69215 * 25 2 1 27 27 C 1.34855 * 108.21524 * 179.83210 * 26 25 2 28 28 C 1.40891 * 107.41648 * 0.42397 * 27 26 25 29 29 C 1.34853 * 107.41947 * 359.73647 * 28 27 26 30 30 H 1.09001 * 109.46744 * 60.00005 * 1 2 3 31 31 H 1.08995 * 109.46831 * 179.97438 * 1 2 3 32 32 H 1.09001 * 109.47390 * 300.00394 * 1 2 3 33 33 H 0.97004 * 119.99851 * 0.02562 * 6 4 2 34 34 H 1.08991 * 108.52453 * 272.72078 * 9 7 6 35 35 H 1.09005 * 108.51790 * 30.23558 * 9 7 6 36 36 H 1.09002 * 109.84395 * 177.92091 * 10 9 7 37 37 H 1.09004 * 109.84611 * 298.90069 * 10 9 7 38 38 H 0.97003 * 119.99494 * 180.02562 * 15 14 12 39 39 H 1.09006 * 108.15796 * 213.28301 * 20 11 10 40 40 H 1.08995 * 108.16327 * 329.85021 * 20 11 10 41 41 H 1.09000 * 109.47190 * 59.99688 * 22 21 20 42 42 H 1.08990 * 109.46968 * 179.97438 * 22 21 20 43 43 H 1.08997 * 109.46681 * 299.99747 * 22 21 20 44 44 H 1.09005 * 109.47161 * 60.00293 * 23 21 20 45 45 H 1.09003 * 109.47067 * 179.97438 * 23 21 20 46 46 H 1.08998 * 109.47549 * 299.99845 * 23 21 20 47 47 H 1.08998 * 109.21009 * 337.06369 * 24 7 6 48 48 H 1.08999 * 109.20749 * 96.37556 * 24 7 6 49 49 H 1.07995 * 125.89338 * 359.96002 * 26 25 2 50 50 H 1.07994 * 126.29142 * 180.16183 * 27 26 25 51 51 H 1.08000 * 126.29326 * 179.73290 * 28 27 26 52 52 H 1.08000 * 125.89619 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 8 2.7296 -1.6964 1.1193 6 7 1.7067 -0.2499 2.4546 7 6 2.1946 -0.9408 3.6508 8 1 3.1940 -1.3385 3.4746 9 6 1.2394 -2.0654 4.0374 10 6 1.8766 -3.1830 4.7326 11 7 2.5265 -2.6345 5.9702 12 6 2.0176 -2.9212 7.2088 13 1 2.1150 -2.2053 8.0116 14 6 1.3767 -4.1320 7.4325 15 7 1.5827 -5.1459 6.6188 16 14 0.2218 -4.3224 8.8884 17 1 -1.1734 -4.0634 8.4506 18 1 0.3242 -5.7037 9.4240 19 1 0.5965 -3.3516 9.9477 20 6 3.6888 -1.8051 5.8339 21 6 3.4298 -0.2810 5.7346 22 6 3.1591 0.2797 7.1322 23 6 4.6626 0.4053 5.1428 24 6 2.2068 -0.0061 4.8256 25 7 2.0184 -0.6905 -1.1962 26 6 1.7656 -1.9902 -1.5219 27 6 2.3800 -2.2587 -2.6919 28 6 3.0442 -1.0846 -3.0987 29 6 2.8055 -0.1416 -2.1646 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 -0.3634 0.5139 0.8899 33 1 1.1487 0.5386 2.5436 34 1 0.4629 -1.6539 4.6822 35 1 0.7669 -2.4451 3.1314 36 1 1.1262 -3.9247 5.0064 37 1 2.6300 -3.6378 4.0894 38 1 1.1345 -5.9919 6.7751 39 1 4.3366 -1.9843 6.6921 40 1 4.2260 -2.1175 4.9386 41 1 4.0239 0.0979 7.7704 42 1 2.9771 1.3521 7.0645 43 1 2.2840 -0.2116 7.5575 44 1 4.8600 0.0037 4.1489 45 1 4.4822 1.4779 5.0716 46 1 5.5236 0.2232 5.7859 47 1 2.2513 1.0218 4.4657 48 1 1.2926 -0.1438 5.4030 49 1 1.1737 -2.6842 -0.9437 50 1 2.3688 -3.2017 -3.2181 51 1 3.6357 -0.9622 -3.9939 52 1 3.1746 0.8732 -2.1807 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001089363111.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:56:32 Heat of formation + Delta-G solvation = 21.342026 kcal Electronic energy + Delta-G solvation = -30555.709366 eV Core-core repulsion = 26749.158760 eV Total energy + Delta-G solvation = -3806.550607 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 333.216 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -42.33798 -41.10825 -39.66881 -36.31839 -36.00999 -35.29799 -33.50401 -32.23100 -30.27194 -29.59397 -29.03742 -28.14792 -27.37461 -25.84997 -25.04283 -23.41969 -22.17439 -21.61029 -21.32929 -20.66174 -19.58895 -18.60005 -18.51893 -17.94057 -17.17141 -16.70497 -16.38824 -16.17622 -15.62420 -15.37259 -15.20690 -15.00905 -14.88939 -14.47242 -14.45137 -14.29933 -13.84983 -13.52679 -13.39718 -13.26967 -13.19342 -13.11484 -13.04715 -13.01214 -12.95461 -12.82411 -12.61181 -12.48567 -12.43691 -12.26130 -12.06625 -11.83341 -11.66029 -11.35533 -11.20259 -11.16489 -10.91996 -10.50489 -10.05147 -9.50908 -8.99535 -8.60334 -7.84777 -5.33124 1.28587 1.45889 1.47669 1.48440 1.56525 1.87968 2.19360 2.28413 2.51954 3.24654 3.47367 3.57551 3.79496 3.81868 3.86398 3.98509 4.02017 4.14070 4.31880 4.37049 4.39858 4.45810 4.56851 4.63508 4.69081 4.69428 4.76210 4.80359 4.82002 4.90309 4.91523 4.96362 5.07970 5.09547 5.14387 5.20107 5.24681 5.25454 5.38636 5.41161 5.45303 5.48518 5.53987 5.61618 5.66764 5.69394 5.79238 6.12394 6.31603 6.42199 6.45727 6.60339 7.12532 7.20623 7.86996 8.43382 9.20552 Molecular weight = 333.22amu Principal moments of inertia in cm(-1) A = 0.015126 B = 0.003273 C = 0.002958 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1850.708616 B = 8552.889808 C = 9462.558011 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.120 3.880 3 H 0.161 0.839 4 C 0.495 3.505 5 O -0.571 6.571 6 N -0.699 5.699 7 C 0.165 3.835 8 H 0.062 0.938 9 C -0.123 4.123 10 C 0.162 3.838 11 N -0.592 5.592 12 C -0.247 4.247 13 H 0.072 0.928 14 C -0.051 4.051 15 N -0.933 5.933 16 Si 0.959 3.041 17 H -0.286 1.286 18 H -0.301 1.301 19 H -0.265 1.265 20 C 0.165 3.835 21 C -0.082 4.082 22 C -0.126 4.126 23 C -0.128 4.128 24 C -0.094 4.094 25 N -0.436 5.436 26 C -0.005 4.005 27 C -0.229 4.229 28 C -0.219 4.219 29 C -0.017 4.017 30 H 0.092 0.908 31 H 0.050 0.950 32 H 0.107 0.893 33 H 0.417 0.583 34 H 0.061 0.939 35 H 0.036 0.964 36 H 0.068 0.932 37 H -0.008 1.008 38 H 0.247 0.753 39 H 0.020 0.980 40 H 0.010 0.990 41 H 0.045 0.955 42 H 0.069 0.931 43 H 0.041 0.959 44 H 0.039 0.961 45 H 0.077 0.923 46 H 0.052 0.948 47 H 0.089 0.911 48 H 0.063 0.937 49 H 0.143 0.857 50 H 0.136 0.864 51 H 0.149 0.851 52 H 0.193 0.807 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.131 19.447 -13.224 23.614 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.014 3.986 3 H 0.179 0.821 4 C 0.280 3.720 5 O -0.448 6.448 6 N -0.352 5.352 7 C 0.060 3.940 8 H 0.081 0.919 9 C -0.163 4.163 10 C 0.037 3.963 11 N -0.313 5.313 12 C -0.377 4.377 13 H 0.089 0.911 14 C -0.247 4.247 15 N -0.579 5.579 16 Si 0.788 3.212 17 H -0.213 1.213 18 H -0.228 1.228 19 H -0.190 1.190 20 C 0.037 3.963 21 C -0.085 4.085 22 C -0.183 4.183 23 C -0.186 4.186 24 C -0.132 4.132 25 N -0.113 5.113 26 C -0.135 4.135 27 C -0.253 4.253 28 C -0.243 4.243 29 C -0.146 4.146 30 H 0.111 0.889 31 H 0.069 0.931 32 H 0.125 0.875 33 H 0.256 0.744 34 H 0.079 0.921 35 H 0.055 0.945 36 H 0.087 0.913 37 H 0.011 0.989 38 H 0.056 0.944 39 H 0.038 0.962 40 H 0.029 0.971 41 H 0.065 0.935 42 H 0.088 0.912 43 H 0.060 0.940 44 H 0.058 0.942 45 H 0.095 0.905 46 H 0.072 0.928 47 H 0.107 0.893 48 H 0.082 0.918 49 H 0.161 0.839 50 H 0.154 0.846 51 H 0.167 0.833 52 H 0.210 0.790 Dipole moment (debyes) X Y Z Total from point charges -1.815 18.760 -12.955 22.871 hybrid contribution -0.613 -1.202 0.864 1.602 sum -2.428 17.558 -12.091 21.457 Atomic orbital electron populations 1.22151 0.89369 1.03639 1.05946 1.21535 0.98081 0.98156 0.80842 0.82119 1.21279 0.80113 0.84700 0.85890 1.90806 1.39186 1.27876 1.86977 1.45938 1.53134 1.31873 1.04217 1.19999 0.96793 0.92870 0.84341 0.91948 1.21201 0.99041 0.97631 0.98430 1.19989 0.95761 0.94698 0.85830 1.44041 1.30247 1.55156 1.01898 1.19449 1.31119 0.97769 0.89368 0.91088 1.25780 1.03578 0.94704 1.00604 1.70197 1.44653 1.01635 1.41379 0.85367 0.79403 0.76529 0.79894 1.21337 1.22803 1.18983 1.20551 0.88146 0.90592 0.97053 1.21796 0.95173 0.96004 0.95568 1.21726 1.00967 1.00380 0.95202 1.21761 0.96589 1.00614 0.99597 1.21682 0.98854 0.98570 0.94110 1.43916 1.39921 1.09971 1.17450 1.21672 1.06608 0.86621 0.98617 1.21111 1.05569 1.00159 0.98479 1.21147 1.07010 0.93756 1.02399 1.22335 1.00331 1.01076 0.90845 0.88916 0.93086 0.87468 0.74447 0.92073 0.94526 0.91343 0.98936 0.94352 0.96205 0.97132 0.93544 0.91194 0.94030 0.94162 0.90460 0.92846 0.89309 0.91828 0.83912 0.84646 0.83334 0.78983 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.85 9.14 71.98 0.66 -1.19 16 2 C 0.12 2.01 3.36 44.25 0.15 2.16 16 3 H 0.16 1.40 8.06 -2.38 -0.02 1.38 16 4 C 0.49 12.80 7.04 87.66 0.62 13.42 16 5 O -0.57 -21.84 15.12 -3.04 -0.05 -21.89 16 6 N -0.70 -15.47 4.87 -447.70 -2.18 -17.65 16 7 C 0.16 5.13 2.13 43.91 0.09 5.22 16 8 H 0.06 2.42 5.20 -2.39 -0.01 2.40 16 9 C -0.12 -4.77 4.91 28.36 0.14 -4.63 16 10 C 0.16 8.03 5.37 83.58 0.45 8.48 16 11 N -0.59 -29.13 2.56 -707.80 -1.81 -30.95 16 12 C -0.25 -13.14 9.29 84.03 0.78 -12.36 16 13 H 0.07 3.66 6.70 -2.91 -0.02 3.65 16 14 C -0.05 -2.85 4.93 84.86 0.42 -2.43 16 15 N -0.93 -55.86 11.25 21.65 0.24 -55.62 16 16 Si 0.96 44.47 29.60 68.60 2.03 46.51 16 17 H -0.29 -13.06 7.11 99.48 0.71 -12.35 16 18 H -0.30 -14.29 7.11 99.48 0.71 -13.58 16 19 H -0.27 -11.61 7.11 99.48 0.71 -10.90 16 20 C 0.16 6.92 4.00 87.60 0.35 7.27 16 21 C -0.08 -2.50 0.77 -50.90 -0.04 -2.54 16 22 C -0.13 -3.64 8.28 71.98 0.60 -3.04 16 23 C -0.13 -3.21 8.20 71.98 0.59 -2.62 16 24 C -0.09 -2.56 4.15 30.30 0.13 -2.43 16 25 N -0.44 -9.97 2.40 -505.91 -1.22 -11.19 16 26 C -0.01 -0.14 9.56 83.21 0.80 0.65 16 27 C -0.23 -6.16 10.86 22.14 0.24 -5.92 16 28 C -0.22 -5.09 10.86 22.14 0.24 -4.85 16 29 C -0.02 -0.35 11.39 83.21 0.95 0.59 16 30 H 0.09 0.87 8.14 -2.39 -0.02 0.85 16 31 H 0.05 0.86 7.92 -2.39 -0.02 0.84 16 32 H 0.11 0.73 7.56 -2.39 -0.02 0.71 16 33 H 0.42 5.47 7.91 -92.71 -0.73 4.73 16 34 H 0.06 2.34 6.93 -2.39 -0.02 2.32 16 35 H 0.04 1.42 7.96 -2.38 -0.02 1.40 16 36 H 0.07 3.87 5.64 -2.39 -0.01 3.85 16 37 H -0.01 -0.42 8.12 -2.38 -0.02 -0.44 16 38 H 0.25 14.44 8.31 -92.71 -0.77 13.67 16 39 H 0.02 0.88 7.85 -2.38 -0.02 0.86 16 40 H 0.01 0.46 6.68 -2.39 -0.02 0.45 16 41 H 0.05 1.34 8.13 -2.39 -0.02 1.32 16 42 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16 43 H 0.04 1.41 6.65 -2.39 -0.02 1.40 16 44 H 0.04 1.08 7.55 -2.38 -0.02 1.07 16 45 H 0.08 1.49 8.12 -2.39 -0.02 1.47 16 46 H 0.05 1.32 8.14 -2.39 -0.02 1.30 16 47 H 0.09 1.72 7.66 -2.39 -0.02 1.70 16 48 H 0.06 1.92 6.66 -2.39 -0.02 1.90 16 49 H 0.14 4.15 8.06 -2.91 -0.02 4.13 16 50 H 0.14 3.33 8.06 -2.91 -0.02 3.30 16 51 H 0.15 2.80 8.06 -2.91 -0.02 2.77 16 52 H 0.19 2.38 8.06 -2.91 -0.02 2.36 16 Total: -1.00 -75.23 397.62 4.34 -70.89 By element: Atomic # 1 Polarization: 23.97 SS G_CDS: 0.17 Total: 24.13 kcal Atomic # 6 Polarization: -11.39 SS G_CDS: 7.15 Total: -4.24 kcal Atomic # 7 Polarization: -110.44 SS G_CDS: -4.97 Total: -115.41 kcal Atomic # 8 Polarization: -21.84 SS G_CDS: -0.05 Total: -21.89 kcal Atomic # 14 Polarization: 44.47 SS G_CDS: 2.03 Total: 46.51 kcal Total: -75.23 4.34 -70.89 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001089363111.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.235 kcal (2) G-P(sol) polarization free energy of solvation -75.230 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.005 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.337 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.893 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.342 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds