Wall clock time and date at job start Tue Mar 31 2020 18:09:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46498 * 109.46858 * 2 1 4 4 C 1.35531 * 125.68341 * 267.41777 * 3 2 1 5 5 C 1.35457 * 108.87510 * 179.83062 * 4 3 2 6 6 C 1.39832 * 107.86133 * 0.42942 * 5 4 3 7 7 C 1.37657 * 125.67588 * 87.72597 * 3 2 1 8 8 C 1.46674 * 126.23226 * 359.97438 * 7 3 2 9 9 O 1.21704 * 120.00074 * 5.27380 * 8 7 3 10 10 N 1.34776 * 120.00182 * 185.27710 * 8 7 3 11 11 C 1.46496 * 120.00080 * 184.92349 * 10 8 7 12 12 H 1.08999 * 110.21341 * 36.93248 * 11 10 8 13 13 C 1.52528 * 110.25117 * 275.00028 * 11 10 8 14 14 C 1.46237 * 114.27889 * 151.62451 * 13 11 10 15 15 N 1.50163 * 107.53725 * 58.40303 * 14 13 11 16 16 C 1.36938 * 120.53267 * 109.61193 * 15 14 13 17 17 H 1.08006 * 119.99770 * 157.11472 * 16 15 14 18 18 C 1.38813 * 120.00439 * 337.11374 * 16 15 14 19 19 N 1.31617 * 119.99561 * 347.66444 * 18 16 15 20 20 Si 1.86799 * 120.00098 * 167.66374 * 18 16 15 21 21 H 1.48502 * 109.47330 * 0.02562 * 20 18 16 22 22 H 1.48506 * 109.46903 * 119.99979 * 20 18 16 23 23 H 1.48494 * 109.46945 * 239.99970 * 20 18 16 24 24 C 1.43432 * 118.93119 * 289.59502 * 15 14 13 25 25 C 1.54903 * 116.07945 * 91.55935 * 24 15 14 26 26 C 1.53002 * 109.35715 * 78.85178 * 25 24 15 27 27 C 1.52995 * 109.35924 * 198.43713 * 25 24 15 28 28 C 1.50131 * 110.24943 * 159.02000 * 11 10 8 29 29 H 1.09005 * 109.46465 * 299.99234 * 1 2 3 30 30 H 1.08995 * 109.47723 * 59.99675 * 1 2 3 31 31 H 1.08999 * 109.46687 * 179.97438 * 1 2 3 32 32 H 1.08990 * 109.47294 * 120.00418 * 2 1 3 33 33 H 1.09005 * 109.46465 * 240.00766 * 2 1 3 34 34 H 1.08008 * 125.55892 * 359.97438 * 4 3 2 35 35 H 1.07997 * 126.06800 * 180.16364 * 5 4 3 36 36 H 1.08003 * 126.45877 * 179.71454 * 6 5 4 37 37 H 0.97000 * 119.99890 * 4.92951 * 10 8 7 38 38 H 1.09009 * 108.52037 * 272.85964 * 13 11 10 39 39 H 1.08999 * 108.52191 * 30.53382 * 13 11 10 40 40 H 1.08999 * 109.84978 * 177.91786 * 14 13 11 41 41 H 1.09000 * 109.84280 * 298.83081 * 14 13 11 42 42 H 0.97002 * 119.99749 * 179.97438 * 19 18 16 43 43 H 1.08998 * 108.16385 * 213.28093 * 24 15 14 44 44 H 1.09005 * 108.15353 * 330.05943 * 24 15 14 45 45 H 1.09000 * 109.47179 * 59.99883 * 26 25 24 46 46 H 1.08997 * 109.47055 * 179.97438 * 26 25 24 47 47 H 1.08998 * 109.47082 * 300.00053 * 26 25 24 48 48 H 1.09006 * 109.47131 * 60.00588 * 27 25 24 49 49 H 1.09000 * 109.47097 * 180.02562 * 27 25 24 50 50 H 1.09000 * 109.47219 * 300.00580 * 27 25 24 51 51 H 1.09003 * 109.20618 * 337.00168 * 28 11 10 52 52 H 1.08997 * 109.21037 * 96.31427 * 28 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3285 2.1100 -1.0997 5 6 2.7405 3.3397 -0.7086 6 6 2.6968 3.3825 0.6884 7 6 2.2440 2.1529 1.1173 8 6 2.0396 1.7421 2.5104 9 8 1.7254 0.5945 2.7666 10 7 2.1995 2.6354 3.5069 11 6 2.1015 2.2012 4.9026 12 1 2.5364 1.2086 5.0196 13 6 0.6442 2.1954 5.3527 14 6 0.3429 1.2229 6.4024 15 7 1.2252 1.5364 7.5764 16 6 0.6945 2.0585 8.7257 17 1 1.2181 1.9432 9.6633 18 6 -0.5165 2.7359 8.6858 19 7 -1.0348 3.0896 7.5289 20 14 -1.4103 3.1456 10.2741 21 1 -0.6233 2.6430 11.4288 22 1 -1.5691 4.6178 10.3872 23 1 -2.7486 2.5022 10.2690 24 6 2.6327 1.2797 7.4746 25 6 3.5046 2.4561 6.9690 26 6 3.7390 3.4426 8.1148 27 6 4.8518 1.9170 6.4842 28 6 2.7931 3.1842 5.8023 29 1 -0.3632 0.5138 0.8901 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8934 -0.5138 0.8899 33 1 1.8933 -0.5138 -0.8901 34 1 2.2566 1.7671 -2.1214 35 1 3.0520 4.1430 -1.3599 36 1 2.9671 4.2206 1.3136 37 1 2.3794 3.5658 3.2999 38 1 0.3911 3.1903 5.7194 39 1 0.0161 1.9756 4.4894 40 1 -0.7041 1.3054 6.6939 41 1 0.5483 0.2147 6.0427 42 1 -1.8812 3.5626 7.5009 43 1 2.9966 0.9859 8.4591 44 1 2.7764 0.4383 6.7967 45 1 4.2508 2.9349 8.9324 46 1 4.3528 4.2710 7.7611 47 1 2.7809 3.8244 8.4672 48 1 4.6887 1.2089 5.6716 49 1 5.4671 2.7434 6.1283 50 1 5.3597 1.4145 7.3074 51 1 3.5304 3.7418 5.2247 52 1 2.0571 3.8781 6.2083 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001089562382.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:09:35 Heat of formation + Delta-G solvation = 17.824791 kcal Electronic energy + Delta-G solvation = -30777.237849 eV Core-core repulsion = 26970.534724 eV Total energy + Delta-G solvation = -3806.703126 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 333.216 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -42.34200 -40.90205 -39.33185 -36.30699 -35.99428 -35.00159 -33.30237 -32.45291 -30.24921 -30.19044 -28.83908 -28.03925 -27.29521 -25.23495 -24.58116 -23.99418 -22.77646 -21.70671 -21.25066 -20.61420 -19.43885 -18.63057 -18.56592 -17.26821 -16.87075 -16.65430 -16.30698 -15.82743 -15.61807 -15.39528 -15.26453 -15.20828 -14.93686 -14.62750 -14.53924 -14.16940 -13.85668 -13.49134 -13.45461 -13.22103 -13.16164 -13.10549 -13.04985 -12.88790 -12.85234 -12.70118 -12.52422 -12.33314 -12.26056 -12.16551 -11.88566 -11.67421 -11.51852 -11.41006 -11.13196 -11.03878 -10.84524 -10.50001 -9.93674 -9.66625 -9.11348 -8.60774 -7.75033 -5.19970 0.54280 1.47547 1.51185 1.58973 1.72893 1.89109 2.43557 2.45833 2.56208 3.37191 3.58273 3.81091 3.82843 3.97323 4.06988 4.08669 4.10206 4.19268 4.37826 4.43879 4.46621 4.48792 4.51166 4.53432 4.73968 4.76335 4.79100 4.86964 4.90292 4.94723 4.97407 5.08047 5.12064 5.14456 5.20679 5.22254 5.26957 5.30394 5.34177 5.35514 5.48788 5.52647 5.67117 5.71576 5.73269 5.80233 5.89822 6.05968 6.09147 6.39410 6.46849 6.63756 7.20931 7.27531 7.93514 8.45402 9.28141 Molecular weight = 333.22amu Principal moments of inertia in cm(-1) A = 0.015153 B = 0.003462 C = 0.003137 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1847.401151 B = 8086.379741 C = 8923.437952 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.091 3.909 3 N -0.415 5.415 4 C 0.023 3.977 5 C -0.219 4.219 6 C -0.140 4.140 7 C -0.086 4.086 8 C 0.579 3.421 9 O -0.586 6.586 10 N -0.700 5.700 11 C 0.168 3.832 12 H 0.067 0.933 13 C -0.106 4.106 14 C 0.170 3.830 15 N -0.597 5.597 16 C -0.239 4.239 17 H 0.066 0.934 18 C -0.047 4.047 19 N -0.923 5.923 20 Si 0.957 3.043 21 H -0.272 1.272 22 H -0.295 1.295 23 H -0.298 1.298 24 C 0.163 3.837 25 C -0.085 4.085 26 C -0.121 4.121 27 C -0.127 4.127 28 C -0.091 4.091 29 H 0.027 0.973 30 H 0.072 0.928 31 H 0.089 0.911 32 H 0.081 0.919 33 H 0.123 0.877 34 H 0.204 0.796 35 H 0.166 0.834 36 H 0.156 0.844 37 H 0.409 0.591 38 H 0.071 0.929 39 H 0.011 0.989 40 H 0.073 0.927 41 H -0.001 1.001 42 H 0.244 0.756 43 H 0.031 0.969 44 H 0.026 0.974 45 H 0.052 0.948 46 H 0.058 0.942 47 H 0.035 0.965 48 H 0.042 0.958 49 H 0.067 0.933 50 H 0.060 0.940 51 H 0.074 0.926 52 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.351 0.050 -17.440 20.281 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.029 4.029 3 N -0.089 5.089 4 C -0.113 4.113 5 C -0.242 4.242 6 C -0.167 4.167 7 C -0.199 4.199 8 C 0.369 3.631 9 O -0.468 6.468 10 N -0.351 5.351 11 C 0.064 3.936 12 H 0.085 0.915 13 C -0.146 4.146 14 C 0.046 3.954 15 N -0.318 5.318 16 C -0.369 4.369 17 H 0.083 0.917 18 C -0.241 4.241 19 N -0.571 5.571 20 Si 0.788 3.212 21 H -0.197 1.197 22 H -0.222 1.222 23 H -0.225 1.225 24 C 0.035 3.965 25 C -0.089 4.089 26 C -0.179 4.179 27 C -0.184 4.184 28 C -0.130 4.130 29 H 0.046 0.954 30 H 0.091 0.909 31 H 0.107 0.893 32 H 0.100 0.900 33 H 0.142 0.858 34 H 0.220 0.780 35 H 0.184 0.816 36 H 0.174 0.826 37 H 0.245 0.755 38 H 0.089 0.911 39 H 0.030 0.970 40 H 0.091 0.909 41 H 0.017 0.983 42 H 0.054 0.946 43 H 0.049 0.951 44 H 0.044 0.956 45 H 0.071 0.929 46 H 0.077 0.923 47 H 0.054 0.946 48 H 0.061 0.939 49 H 0.086 0.914 50 H 0.079 0.921 51 H 0.092 0.908 52 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 9.853 -1.081 -17.183 19.837 hybrid contribution -1.082 0.679 1.013 1.630 sum 8.771 -0.401 -16.170 18.400 Atomic orbital electron populations 1.22008 0.94122 1.03647 1.01570 1.22141 0.95918 0.79421 1.05428 1.44286 1.47235 1.12242 1.05098 1.22691 1.03635 0.92512 0.92440 1.21168 1.10073 0.98491 0.94515 1.21684 1.03070 0.95182 0.96717 1.20045 1.17741 0.94873 0.87210 1.17422 0.76316 0.84820 0.84591 1.90748 1.50093 1.20701 1.85285 1.45766 1.71941 1.12026 1.05323 1.20093 0.96220 0.98346 0.78917 0.91489 1.21017 0.94387 1.02945 0.96242 1.20041 0.97029 0.92076 0.86282 1.44288 1.01401 1.73088 1.13057 1.19418 1.03939 1.26658 0.86924 0.91671 1.25504 1.00705 0.99231 0.98705 1.70092 1.19853 1.43334 1.23818 0.85343 0.78278 0.76825 0.80796 1.19688 1.22212 1.22513 1.20615 0.83964 0.94260 0.97636 1.21845 0.95304 0.97123 0.94641 1.21652 1.00490 0.98413 0.97317 1.21757 0.95262 1.00854 1.00562 1.21630 0.98849 0.97018 0.95454 0.95393 0.90854 0.89270 0.90041 0.85849 0.77958 0.81625 0.82599 0.75451 0.91053 0.96992 0.90917 0.98310 0.94624 0.95077 0.95617 0.92896 0.92278 0.94591 0.93869 0.91417 0.92074 0.90755 0.93222 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.30 10.24 71.98 0.74 -2.57 16 2 C 0.09 1.94 6.27 86.38 0.54 2.48 16 3 N -0.42 -9.81 2.76 -511.02 -1.41 -11.22 16 4 C 0.02 0.39 11.37 83.48 0.95 1.34 16 5 C -0.22 -3.97 10.81 22.01 0.24 -3.73 16 6 C -0.14 -3.16 10.35 22.57 0.23 -2.93 16 7 C -0.09 -2.43 6.88 40.35 0.28 -2.15 16 8 C 0.58 20.13 7.62 86.45 0.66 20.79 16 9 O -0.59 -24.29 14.47 -4.36 -0.06 -24.36 16 10 N -0.70 -22.79 4.99 -451.69 -2.25 -25.04 16 11 C 0.17 6.42 2.07 43.91 0.09 6.51 16 12 H 0.07 2.82 5.36 -2.39 -0.01 2.81 16 13 C -0.11 -4.92 4.70 28.36 0.13 -4.78 16 14 C 0.17 8.64 5.24 83.58 0.44 9.07 16 15 N -0.60 -29.58 2.61 -707.84 -1.85 -31.43 16 16 C -0.24 -12.76 9.00 84.03 0.76 -12.00 16 17 H 0.07 3.45 7.84 -2.91 -0.02 3.43 16 18 C -0.05 -2.54 5.11 84.86 0.43 -2.10 16 19 N -0.92 -52.12 9.08 21.65 0.20 -51.92 16 20 Si 0.96 44.79 29.57 68.60 2.03 46.81 16 21 H -0.27 -12.26 7.11 99.48 0.71 -11.55 16 22 H -0.29 -13.83 7.11 99.48 0.71 -13.12 16 23 H -0.30 -14.15 7.11 99.48 0.71 -13.44 16 24 C 0.16 6.81 4.01 87.60 0.35 7.16 16 25 C -0.09 -2.94 0.76 -50.90 -0.04 -2.98 16 26 C -0.12 -4.10 8.29 71.98 0.60 -3.50 16 27 C -0.13 -3.49 8.20 71.98 0.59 -2.90 16 28 C -0.09 -3.23 4.15 30.30 0.13 -3.10 16 29 H 0.03 0.80 8.14 -2.38 -0.02 0.78 16 30 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 31 H 0.09 1.57 8.14 -2.39 -0.02 1.55 16 32 H 0.08 2.24 6.35 -2.39 -0.02 2.22 16 33 H 0.12 1.61 8.13 -2.38 -0.02 1.59 16 34 H 0.20 1.78 8.06 -2.91 -0.02 1.75 16 35 H 0.17 2.06 8.06 -2.91 -0.02 2.04 16 36 H 0.16 2.87 7.49 -2.91 -0.02 2.85 16 37 H 0.41 10.88 7.39 -92.71 -0.69 10.19 16 38 H 0.07 3.68 5.50 -2.38 -0.01 3.66 16 39 H 0.01 0.56 7.90 -2.39 -0.02 0.54 16 40 H 0.07 4.16 5.74 -2.39 -0.01 4.15 16 41 H 0.00 -0.06 8.13 -2.39 -0.02 -0.08 16 42 H 0.24 13.62 8.31 -92.71 -0.77 12.85 16 43 H 0.03 1.29 7.83 -2.39 -0.02 1.27 16 44 H 0.03 1.07 6.66 -2.38 -0.02 1.05 16 45 H 0.05 1.66 8.13 -2.39 -0.02 1.64 16 46 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16 47 H 0.03 1.47 7.45 -2.39 -0.02 1.45 16 48 H 0.04 1.24 7.57 -2.38 -0.02 1.22 16 49 H 0.07 1.59 8.12 -2.39 -0.02 1.58 16 50 H 0.06 1.55 8.14 -2.39 -0.02 1.53 16 51 H 0.07 2.15 7.63 -2.39 -0.02 2.13 16 52 H 0.05 2.09 6.66 -2.39 -0.02 2.08 16 Total: -1.00 -67.43 394.90 3.98 -63.45 By element: Atomic # 1 Polarization: 28.88 SS G_CDS: 0.22 Total: 29.10 kcal Atomic # 6 Polarization: -2.51 SS G_CDS: 7.11 Total: 4.61 kcal Atomic # 7 Polarization: -114.30 SS G_CDS: -5.31 Total: -119.61 kcal Atomic # 8 Polarization: -24.29 SS G_CDS: -0.06 Total: -24.36 kcal Atomic # 14 Polarization: 44.79 SS G_CDS: 2.03 Total: 46.81 kcal Total: -67.43 3.98 -63.45 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001089562382.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.274 kcal (2) G-P(sol) polarization free energy of solvation -67.434 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.840 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.985 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.449 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.825 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds