Wall clock time and date at job start Tue Mar 31 2020 18:04:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 N 1.46504 * 109.47311 * 2 1 4 4 C 1.36443 * 124.85395 * 89.97403 * 3 2 1 5 5 C 1.50698 * 125.57315 * 0.04108 * 4 3 2 6 6 C 1.34482 * 108.85828 * 180.02562 * 4 3 2 7 7 C 1.46692 * 106.33317 * 359.97438 * 6 4 3 8 8 C 1.47265 * 126.94415 * 179.97438 * 7 6 4 9 9 O 1.21621 * 120.00205 * 180.02562 * 8 7 6 10 10 N 1.34777 * 119.99555 * 0.02562 * 8 7 6 11 11 C 1.46503 * 119.99428 * 179.97438 * 10 8 7 12 12 C 1.53008 * 109.46995 * 180.02562 * 11 10 8 13 13 H 1.08998 * 110.77309 * 51.76211 * 12 11 10 14 14 C 1.54328 * 110.84757 * 288.69442 * 12 11 10 15 15 N 1.47023 * 107.26445 * 219.66919 * 14 12 11 16 16 C 1.36939 * 125.64881 * 178.85021 * 15 14 12 17 17 H 1.08000 * 119.99903 * 342.87500 * 16 15 14 18 18 C 1.38813 * 119.99790 * 162.87291 * 16 15 14 19 19 N 1.31620 * 120.00492 * 331.90309 * 18 16 15 20 20 Si 1.86805 * 119.99884 * 151.90711 * 18 16 15 21 21 H 1.48496 * 109.47349 * 180.02562 * 20 18 16 22 22 H 1.48503 * 109.46948 * 300.00224 * 20 18 16 23 23 H 1.48505 * 109.47175 * 59.99533 * 20 18 16 24 24 C 1.47421 * 108.70467 * 358.59038 * 15 14 12 25 25 C 1.54917 * 104.83049 * 24.35070 * 24 15 14 26 26 H 1.09002 * 110.99802 * 81.10572 * 25 24 15 27 27 C 1.52998 * 111.00163 * 204.91591 * 25 24 15 28 28 C 1.34663 * 124.84694 * 270.28648 * 3 2 1 29 29 C 1.50694 * 125.80366 * 0.02562 * 28 3 2 30 30 H 1.09001 * 109.46929 * 300.00207 * 1 2 3 31 31 H 1.09001 * 109.47412 * 59.99902 * 1 2 3 32 32 H 1.08997 * 109.47230 * 180.02562 * 1 2 3 33 33 H 1.08998 * 109.47607 * 240.00063 * 2 1 3 34 34 H 1.09006 * 109.47267 * 119.99396 * 2 1 3 35 35 H 1.08996 * 109.47413 * 270.00597 * 5 4 3 36 36 H 1.09003 * 109.46831 * 30.00173 * 5 4 3 37 37 H 1.08994 * 109.47262 * 149.99886 * 5 4 3 38 38 H 1.08002 * 126.83861 * 179.97438 * 6 4 3 39 39 H 0.96991 * 120.00715 * 0.02562 * 10 8 7 40 40 H 1.08997 * 109.46938 * 60.00503 * 11 10 8 41 41 H 1.08994 * 109.47527 * 300.00231 * 11 10 8 42 42 H 1.09003 * 109.99465 * 100.19914 * 14 12 11 43 43 H 1.08998 * 109.78421 * 339.03158 * 14 12 11 44 44 H 0.97000 * 119.99473 * 353.96690 * 19 18 16 45 45 H 1.08998 * 110.37200 * 143.19182 * 24 15 14 46 46 H 1.09003 * 110.36526 * 265.40803 * 24 15 14 47 47 H 1.09000 * 109.47258 * 58.55194 * 27 25 24 48 48 H 1.09010 * 109.46654 * 178.55023 * 27 25 24 49 49 H 1.08993 * 109.47577 * 298.54559 * 27 25 24 50 50 H 1.09000 * 109.46991 * 270.15315 * 29 28 3 51 51 H 1.08998 * 109.47700 * 30.15487 * 29 28 3 52 52 H 1.09006 * 109.47317 * 150.15522 * 29 28 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2778 2.1166 1.1197 5 6 2.1097 1.6405 2.5396 6 6 2.7083 3.3355 0.7491 7 6 2.7121 3.3433 -0.7178 8 6 3.1057 4.4581 -1.5960 9 8 3.0594 4.3260 -2.8041 10 7 3.5171 5.6246 -1.0608 11 6 3.9092 6.7333 -1.9344 12 6 4.3319 7.9305 -1.0805 13 1 5.0760 7.6345 -0.3411 14 6 3.1094 8.5722 -0.3909 15 7 3.2965 10.0297 -0.4390 16 6 2.4206 10.9633 0.0472 17 1 1.3982 10.6862 0.2583 18 6 2.8466 12.2657 0.2689 19 7 4.1085 12.5055 0.5561 20 14 1.6290 13.6781 0.1596 21 1 2.3295 14.9581 0.4354 22 1 1.0406 13.7201 -1.2033 23 1 0.5488 13.4789 1.1590 24 6 4.5862 10.3195 -1.0918 25 6 4.8719 9.0784 -1.9738 26 1 4.3239 9.1332 -2.9144 27 6 6.3726 8.9182 -2.2252 28 6 2.2696 2.1085 -1.1051 29 6 2.0959 1.6403 -2.5269 30 1 -0.3633 0.5139 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3633 -1.0276 0.0005 33 1 1.8933 -0.5138 -0.8899 34 1 1.8933 -0.5138 0.8901 35 1 1.1001 1.8676 2.8819 36 1 2.2747 0.5639 2.5837 37 1 2.8327 2.1454 3.1801 38 1 2.9945 4.1472 1.4016 39 1 3.5543 5.7298 -0.0973 40 1 3.0654 7.0156 -2.5641 41 1 4.7438 6.4231 -2.5630 42 1 3.0494 8.2403 0.6456 43 1 2.1990 8.2975 -0.9235 44 1 4.7219 11.7678 0.6992 45 1 4.5061 11.2138 -1.7097 46 1 5.3699 10.4445 -0.3446 47 1 6.8925 8.8227 -1.2720 48 1 6.5470 8.0250 -2.8253 49 1 6.7472 9.7924 -2.7575 50 1 3.0219 1.1821 -2.8742 51 1 1.2891 0.9089 -2.5727 52 1 1.8511 2.4915 -3.1625 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001092794117.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:04:20 Heat of formation + Delta-G solvation = 11.145126 kcal Electronic energy + Delta-G solvation = -28937.643401 eV Core-core repulsion = 25130.650623 eV Total energy + Delta-G solvation = -3806.992778 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 333.216 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -41.69174 -39.22418 -37.98801 -34.63347 -34.41537 -33.06138 -32.82594 -30.73664 -30.06938 -29.46004 -28.77772 -25.93280 -25.59853 -24.61538 -23.90635 -22.70345 -21.70705 -20.24477 -19.90440 -19.43054 -18.68802 -17.38767 -17.04442 -16.12253 -15.75096 -15.51345 -15.19388 -14.80638 -14.53748 -14.09285 -13.78457 -13.66943 -13.56148 -13.46311 -13.40816 -13.34183 -13.16621 -12.87819 -12.79579 -12.65188 -12.59143 -12.33361 -12.06556 -11.88883 -11.85256 -11.74771 -11.52403 -11.33120 -11.15329 -10.68701 -10.47371 -10.22898 -10.07137 -10.02195 -9.92745 -9.57883 -9.41878 -8.90187 -8.64970 -8.34638 -8.10495 -6.87063 -6.04569 -3.08240 1.70986 2.23092 2.51623 3.53405 3.56179 3.58259 3.68530 3.75652 4.20004 4.40265 4.50597 4.61362 4.63494 4.69798 4.91913 5.01373 5.04675 5.08768 5.14273 5.18471 5.20259 5.24843 5.30100 5.36126 5.43740 5.49104 5.53868 5.58731 5.62265 5.70485 5.74821 5.81989 5.86715 5.99590 6.07284 6.10601 6.18318 6.24035 6.33099 6.45112 6.56895 6.63141 6.68191 6.75952 6.91200 6.94510 7.06547 7.07864 7.15063 7.81536 7.86475 8.52990 8.54860 9.08679 9.87631 10.44249 11.28112 Molecular weight = 333.22amu Principal moments of inertia in cm(-1) A = 0.015672 B = 0.002405 C = 0.002243 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1786.165169 B =11638.618313 C =12481.739276 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.094 3.906 3 N -0.439 5.439 4 C 0.009 3.991 5 C -0.083 4.083 6 C -0.164 4.164 7 C -0.231 4.231 8 C 0.590 3.410 9 O -0.558 6.558 10 N -0.721 5.721 11 C 0.136 3.864 12 C -0.109 4.109 13 H 0.077 0.923 14 C 0.141 3.859 15 N -0.604 5.604 16 C -0.335 4.335 17 H 0.063 0.937 18 C -0.026 4.026 19 N -0.917 5.917 20 Si 1.063 2.937 21 H -0.285 1.285 22 H -0.294 1.294 23 H -0.294 1.294 24 C 0.151 3.849 25 C -0.102 4.102 26 H 0.075 0.925 27 C -0.137 4.137 28 C 0.104 3.896 29 C -0.093 4.093 30 H 0.064 0.936 31 H 0.064 0.936 32 H 0.074 0.926 33 H 0.090 0.910 34 H 0.091 0.909 35 H 0.071 0.929 36 H 0.061 0.939 37 H 0.081 0.919 38 H 0.145 0.855 39 H 0.400 0.600 40 H 0.068 0.932 41 H 0.064 0.936 42 H 0.020 0.980 43 H 0.026 0.974 44 H 0.268 0.732 45 H 0.049 0.951 46 H 0.027 0.973 47 H 0.053 0.947 48 H 0.050 0.950 49 H 0.055 0.945 50 H 0.074 0.926 51 H 0.060 0.940 52 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.095 -27.551 -0.159 27.631 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.027 4.027 3 N -0.116 5.116 4 C -0.098 4.098 5 C -0.140 4.140 6 C -0.188 4.188 7 C -0.241 4.241 8 C 0.379 3.621 9 O -0.438 6.438 10 N -0.371 5.371 11 C 0.013 3.987 12 C -0.128 4.128 13 H 0.096 0.904 14 C 0.016 3.984 15 N -0.331 5.331 16 C -0.463 4.463 17 H 0.081 0.919 18 C -0.228 4.228 19 N -0.559 5.559 20 Si 0.893 3.107 21 H -0.211 1.211 22 H -0.221 1.221 23 H -0.221 1.221 24 C 0.026 3.974 25 C -0.122 4.122 26 H 0.094 0.906 27 C -0.195 4.195 28 C -0.012 4.012 29 C -0.150 4.150 30 H 0.083 0.917 31 H 0.083 0.917 32 H 0.093 0.907 33 H 0.109 0.891 34 H 0.109 0.891 35 H 0.089 0.911 36 H 0.080 0.920 37 H 0.100 0.900 38 H 0.162 0.838 39 H 0.234 0.766 40 H 0.086 0.914 41 H 0.083 0.917 42 H 0.038 0.962 43 H 0.044 0.956 44 H 0.080 0.920 45 H 0.068 0.932 46 H 0.044 0.956 47 H 0.072 0.928 48 H 0.069 0.931 49 H 0.074 0.926 50 H 0.093 0.907 51 H 0.079 0.921 52 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -2.474 -26.222 -0.876 26.353 hybrid contribution 0.078 -1.635 0.659 1.764 sum -2.396 -27.857 -0.217 27.961 Atomic orbital electron populations 1.22170 0.94170 1.03017 1.03485 1.21856 0.95724 0.80751 1.04391 1.43625 1.51174 1.11719 1.05099 1.20158 1.08377 0.92665 0.88614 1.20318 1.02957 1.00986 0.89735 1.21814 1.07036 0.96790 0.93179 1.20120 1.15880 0.94927 0.93175 1.17324 0.76244 0.81568 0.86966 1.90706 1.55538 1.82862 1.14717 1.45814 1.67665 1.13080 1.10571 1.21358 0.99870 0.84951 0.92551 1.22483 0.98741 0.93881 0.97699 0.90431 1.21368 0.94447 0.85993 0.96622 1.44539 1.20840 0.99897 1.67778 1.19730 0.91213 0.91671 1.43645 0.91885 1.25721 1.00141 0.98546 0.98370 1.70781 1.05413 1.35515 1.44149 0.83556 0.74607 0.76361 0.76213 1.21106 1.22142 1.22066 1.21569 0.88474 0.94296 0.93082 1.22379 0.95363 0.95893 0.98555 0.90618 1.21686 0.95466 1.01011 1.01309 1.20237 1.00940 0.90984 0.89055 1.20553 1.01798 1.02946 0.89678 0.91700 0.91673 0.90668 0.89137 0.89090 0.91075 0.92003 0.90032 0.83761 0.76560 0.91412 0.91725 0.96232 0.95575 0.92030 0.93226 0.95575 0.92792 0.93139 0.92608 0.90710 0.92141 0.87993 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.86 10.24 37.15 0.38 -0.48 16 2 C 0.09 0.53 6.08 -4.04 -0.02 0.51 16 3 N -0.44 -4.13 2.69 -107.97 -0.29 -4.42 16 4 C 0.01 0.09 6.85 -81.87 -0.56 -0.47 16 5 C -0.08 -0.53 10.06 36.00 0.36 -0.17 16 6 C -0.16 -1.92 10.45 -37.50 -0.39 -2.31 16 7 C -0.23 -3.17 6.29 -103.35 -0.65 -3.82 16 8 C 0.59 9.35 7.81 -12.59 -0.10 9.25 16 9 O -0.56 -10.19 14.82 5.26 0.08 -10.11 16 10 N -0.72 -10.64 5.47 -61.43 -0.34 -10.98 16 11 C 0.14 2.15 5.02 -4.04 -0.02 2.13 16 12 C -0.11 -1.87 2.42 -88.78 -0.22 -2.08 16 13 H 0.08 1.27 8.01 -51.93 -0.42 0.85 16 14 C 0.14 3.01 6.76 -3.06 -0.02 2.99 16 15 N -0.60 -15.71 3.29 -170.06 -0.56 -16.27 16 16 C -0.33 -9.72 10.02 -15.06 -0.15 -9.87 16 17 H 0.06 1.83 7.97 -52.49 -0.42 1.41 16 18 C -0.03 -0.77 5.08 -17.43 -0.09 -0.86 16 19 N -0.92 -28.14 12.93 55.49 0.72 -27.43 16 20 Si 1.06 25.93 30.00 -169.99 -5.10 20.83 16 21 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 22 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 23 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 24 C 0.15 3.57 4.77 -2.53 -0.01 3.56 16 25 C -0.10 -1.85 3.09 -88.47 -0.27 -2.13 16 26 H 0.08 1.38 8.05 -51.93 -0.42 0.97 16 27 C -0.14 -2.06 9.30 37.16 0.35 -1.72 16 28 C 0.10 1.23 6.89 -81.88 -0.56 0.66 16 29 C -0.09 -0.93 9.26 36.00 0.33 -0.60 16 30 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 31 H 0.06 0.40 8.11 -51.93 -0.42 -0.02 16 32 H 0.07 0.23 8.14 -51.93 -0.42 -0.19 16 33 H 0.09 0.41 7.51 -51.93 -0.39 0.02 16 34 H 0.09 0.37 6.90 -51.93 -0.36 0.01 16 35 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 36 H 0.06 0.30 6.94 -51.93 -0.36 -0.06 16 37 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 38 H 0.14 1.48 7.70 -52.49 -0.40 1.08 16 39 H 0.40 5.29 7.59 -40.82 -0.31 4.98 16 40 H 0.07 1.17 7.94 -51.93 -0.41 0.76 16 41 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 42 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 43 H 0.03 0.57 7.69 -51.93 -0.40 0.17 16 44 H 0.27 8.23 6.06 -40.82 -0.25 7.99 16 45 H 0.05 1.29 7.95 -51.93 -0.41 0.87 16 46 H 0.03 0.66 6.70 -51.93 -0.35 0.31 16 47 H 0.05 0.80 8.11 -51.93 -0.42 0.38 16 48 H 0.05 0.67 8.14 -51.92 -0.42 0.24 16 49 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 50 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 51 H 0.06 0.45 7.56 -51.93 -0.39 0.06 16 52 H 0.10 1.26 6.47 -51.93 -0.34 0.92 16 LS Contribution 411.44 15.07 6.20 6.20 Total: -1.00 -35.18 411.44 -10.01 -45.19 By element: Atomic # 1 Polarization: 11.47 SS G_CDS: -9.07 Total: 2.40 kcal Atomic # 6 Polarization: -3.75 SS G_CDS: -1.65 Total: -5.40 kcal Atomic # 7 Polarization: -58.63 SS G_CDS: -0.47 Total: -59.10 kcal Atomic # 8 Polarization: -10.19 SS G_CDS: 0.08 Total: -10.11 kcal Atomic # 14 Polarization: 25.93 SS G_CDS: -5.10 Total: 20.83 kcal Total LS contribution 6.20 Total: 6.20 kcal Total: -35.18 -10.01 -45.19 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001092794117.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.334 kcal (2) G-P(sol) polarization free energy of solvation -35.184 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.150 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.005 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.189 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.145 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds