Wall clock time and date at job start Tue Mar 31 2020 18:03:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46498 * 109.46866 * 2 1 4 4 C 1.36442 * 124.85352 * 264.95608 * 3 2 1 5 5 C 1.34487 * 108.85726 * 180.02562 * 4 3 2 6 6 C 1.46681 * 106.33434 * 0.02562 * 5 4 3 7 7 C 1.47262 * 126.94251 * 180.02562 * 6 5 4 8 8 O 1.21627 * 119.99822 * 179.97438 * 7 6 5 9 9 N 1.34774 * 120.00148 * 359.97438 * 7 6 5 10 10 C 1.46500 * 119.99969 * 180.02562 * 9 7 6 11 11 C 1.53000 * 109.46883 * 179.97438 * 10 9 7 12 12 C 1.53001 * 109.47008 * 179.97438 * 11 10 9 13 13 H 1.09007 * 110.88838 * 54.29902 * 12 11 10 14 14 C 1.54910 * 111.00735 * 290.42043 * 12 11 10 15 15 N 1.47465 * 104.81040 * 204.95165 * 14 12 11 16 16 C 1.36941 * 125.62652 * 204.04692 * 15 14 12 17 17 H 1.07997 * 120.00120 * 359.97438 * 16 15 14 18 18 C 1.38811 * 120.00028 * 179.97438 * 16 15 14 19 19 N 1.31624 * 120.00077 * 359.97438 * 18 16 15 20 20 Si 1.86800 * 120.00189 * 179.97438 * 18 16 15 21 21 H 1.48503 * 109.46779 * 89.99882 * 20 18 16 22 22 H 1.48492 * 109.47356 * 209.99739 * 20 18 16 23 23 H 1.48501 * 109.46994 * 330.00137 * 20 18 16 24 24 C 1.47021 * 108.72581 * 24.06466 * 15 14 12 25 25 C 1.54325 * 107.26878 * 358.97847 * 24 15 14 26 26 H 1.08994 * 110.71960 * 96.17080 * 25 24 15 27 27 C 1.53004 * 110.86820 * 219.37087 * 25 24 15 28 28 C 1.34665 * 124.84748 * 85.00621 * 3 2 1 29 29 C 1.50698 * 125.80555 * 0.21704 * 28 3 2 30 30 H 1.08998 * 109.47209 * 299.99396 * 1 2 3 31 31 H 1.08997 * 109.47433 * 60.00052 * 1 2 3 32 32 H 1.09004 * 109.47222 * 179.97438 * 1 2 3 33 33 H 1.08999 * 109.47004 * 240.00094 * 2 1 3 34 34 H 1.09002 * 109.47146 * 120.00308 * 2 1 3 35 35 H 1.08005 * 125.57157 * 0.04122 * 4 3 2 36 36 H 1.08008 * 126.82991 * 180.02562 * 5 4 3 37 37 H 0.96996 * 119.99895 * 359.97438 * 9 7 6 38 38 H 1.09002 * 109.46680 * 299.99522 * 10 9 7 39 39 H 1.08997 * 109.47728 * 59.99189 * 10 9 7 40 40 H 1.09002 * 109.47221 * 299.99373 * 11 10 9 41 41 H 1.08999 * 109.47226 * 59.99941 * 11 10 9 42 42 H 1.09004 * 110.36327 * 323.75169 * 14 12 11 43 43 H 1.08998 * 110.37135 * 86.07105 * 14 12 11 44 44 H 0.96992 * 120.00095 * 179.97438 * 19 18 16 45 45 H 1.09000 * 109.88253 * 239.56132 * 24 15 14 46 46 H 1.09004 * 109.87974 * 118.39325 * 24 15 14 47 47 H 1.08997 * 109.47090 * 173.60997 * 27 25 24 48 48 H 1.08993 * 109.47442 * 293.61084 * 27 25 24 49 49 H 1.09000 * 109.47269 * 53.61219 * 27 25 24 50 50 H 1.08994 * 109.47185 * 269.72659 * 29 28 3 51 51 H 1.09007 * 109.46663 * 29.72324 * 29 28 3 52 52 H 1.08997 * 109.46829 * 149.71810 * 29 28 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3710 2.0836 -1.1153 5 6 2.7717 3.3131 -0.7461 6 6 2.6539 3.3639 0.7151 7 6 2.9755 4.5041 1.5898 8 8 2.8290 4.4075 2.7934 9 7 3.4320 5.6547 1.0568 10 6 3.7524 6.7888 1.9271 11 6 4.2466 7.9606 1.0765 12 6 4.5807 9.1452 1.9853 13 1 5.2844 8.8513 2.7641 14 6 3.2953 9.7537 2.5995 15 7 3.6492 11.1522 2.9055 16 6 3.0419 11.9414 3.8455 17 1 2.2287 11.5477 4.4373 18 6 3.4715 13.2472 4.0378 19 7 4.4629 13.7269 3.3170 20 14 2.6426 14.3240 5.3196 21 1 3.3375 14.1666 6.6225 22 1 2.7096 15.7442 4.8913 23 1 1.2217 13.9170 5.4641 24 6 4.7614 11.5590 2.0343 25 6 5.1296 10.3403 1.1621 26 1 4.6376 10.3982 0.1912 27 6 6.6462 10.2297 0.9924 28 6 2.1840 2.1388 1.1010 29 6 1.9053 1.7078 2.5178 30 1 -0.3633 0.5137 0.8900 31 1 -0.3634 0.5138 -0.8899 32 1 -0.3634 -1.0277 -0.0005 33 1 1.8933 -0.5138 -0.8900 34 1 1.8934 -0.5139 0.8900 35 1 2.3341 1.7128 -2.1291 36 1 3.1124 4.1055 -1.3962 37 1 3.5491 5.7316 0.0970 38 1 2.8599 7.0889 2.4761 39 1 4.5315 6.4975 2.6315 40 1 5.1393 7.6603 0.5277 41 1 3.4678 8.2520 0.3718 42 1 2.4775 9.7185 1.8796 43 1 3.0222 9.2225 3.5113 44 1 4.7628 14.6394 3.4511 45 1 5.6182 11.8537 2.6402 46 1 4.4506 12.3889 1.3995 47 1 6.8869 9.3031 0.4713 48 1 7.0097 11.0778 0.4123 49 1 7.1224 10.2294 1.9729 50 1 0.8731 1.9465 2.7738 51 1 2.0628 0.6329 2.6083 52 1 2.5785 2.2319 3.1961 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001103355318.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:03:16 Heat of formation + Delta-G solvation = 15.958211 kcal Electronic energy + Delta-G solvation = -28290.848772 eV Core-core repulsion = 24484.064706 eV Total energy + Delta-G solvation = -3806.784067 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 333.216 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.65443 -39.14462 -38.00725 -35.05775 -34.47180 -33.12889 -31.80156 -31.15789 -30.58373 -29.61133 -27.12500 -26.29239 -25.56306 -24.43975 -23.65590 -22.30394 -21.77591 -20.23829 -19.76370 -19.14352 -18.96596 -17.61371 -16.74634 -16.16385 -15.65407 -15.57345 -15.27357 -14.97798 -14.76317 -14.18097 -13.89328 -13.77987 -13.66045 -13.44600 -13.28768 -13.13522 -12.96195 -12.86264 -12.58797 -12.47198 -12.28530 -12.14355 -11.83062 -11.78110 -11.68242 -11.61147 -11.28335 -11.13957 -10.94912 -10.69500 -10.68898 -9.99911 -9.86168 -9.78801 -9.70210 -9.55271 -9.38745 -8.98838 -8.77732 -8.51397 -8.33969 -6.72229 -5.62229 -2.94846 1.63634 2.19990 2.46237 3.46080 3.47717 3.50925 3.52909 3.60676 4.14046 4.40895 4.46639 4.57874 4.61020 4.67525 4.96054 4.98256 5.05221 5.05815 5.20041 5.23791 5.34368 5.40240 5.44814 5.50059 5.55466 5.60404 5.66939 5.70373 5.78357 5.80755 5.87042 5.98770 6.06093 6.13803 6.21239 6.31547 6.37716 6.46806 6.54465 6.58066 6.65767 6.72625 6.76391 6.83434 6.89684 6.97865 7.11737 7.66730 7.71940 7.74629 7.93215 8.36020 8.45687 9.32060 9.92540 10.59497 11.49465 Molecular weight = 333.22amu Principal moments of inertia in cm(-1) A = 0.020853 B = 0.001965 C = 0.001852 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1342.437349 B =14249.017993 C =15114.629260 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.096 3.904 3 N -0.443 5.443 4 C -0.019 4.019 5 C -0.167 4.167 6 C -0.235 4.235 7 C 0.588 3.412 8 O -0.553 6.553 9 N -0.725 5.725 10 C 0.121 3.879 11 C -0.115 4.115 12 C -0.095 4.095 13 H 0.076 0.924 14 C 0.139 3.861 15 N -0.608 5.608 16 C -0.224 4.224 17 H 0.077 0.923 18 C -0.011 4.011 19 N -0.923 5.923 20 Si 0.911 3.089 21 H -0.289 1.289 22 H -0.291 1.291 23 H -0.282 1.282 24 C 0.184 3.816 25 C -0.115 4.115 26 H 0.063 0.937 27 C -0.133 4.133 28 C 0.106 3.894 29 C -0.094 4.094 30 H 0.065 0.935 31 H 0.064 0.936 32 H 0.075 0.925 33 H 0.092 0.908 34 H 0.090 0.910 35 H 0.165 0.835 36 H 0.145 0.855 37 H 0.398 0.602 38 H 0.071 0.929 39 H 0.065 0.935 40 H 0.064 0.936 41 H 0.067 0.933 42 H 0.017 0.983 43 H 0.037 0.963 44 H 0.251 0.749 45 H 0.047 0.953 46 H 0.039 0.961 47 H 0.043 0.957 48 H 0.050 0.950 49 H 0.053 0.947 50 H 0.076 0.924 51 H 0.060 0.940 52 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.794 -29.010 -12.031 31.530 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.026 4.026 3 N -0.120 5.120 4 C -0.145 4.145 5 C -0.191 4.191 6 C -0.245 4.245 7 C 0.377 3.623 8 O -0.432 6.432 9 N -0.376 5.376 10 C -0.003 4.003 11 C -0.154 4.154 12 C -0.115 4.115 13 H 0.094 0.906 14 C 0.013 3.987 15 N -0.333 5.333 16 C -0.352 4.352 17 H 0.095 0.905 18 C -0.207 4.207 19 N -0.571 5.571 20 Si 0.742 3.258 21 H -0.217 1.217 22 H -0.218 1.218 23 H -0.208 1.208 24 C 0.059 3.941 25 C -0.134 4.134 26 H 0.082 0.918 27 C -0.190 4.190 28 C -0.011 4.011 29 C -0.151 4.151 30 H 0.084 0.916 31 H 0.083 0.917 32 H 0.094 0.906 33 H 0.110 0.890 34 H 0.108 0.892 35 H 0.182 0.818 36 H 0.162 0.838 37 H 0.232 0.768 38 H 0.089 0.911 39 H 0.084 0.916 40 H 0.083 0.917 41 H 0.086 0.914 42 H 0.035 0.965 43 H 0.056 0.944 44 H 0.061 0.939 45 H 0.065 0.935 46 H 0.057 0.943 47 H 0.062 0.938 48 H 0.069 0.931 49 H 0.072 0.928 50 H 0.095 0.905 51 H 0.079 0.921 52 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -3.001 -29.160 -11.108 31.348 hybrid contribution -0.366 0.718 -0.061 0.808 sum -3.367 -28.442 -11.169 30.742 Atomic orbital electron populations 1.22175 0.94135 1.03103 1.03479 1.21888 0.95745 0.80483 1.04472 1.43741 1.50421 1.11924 1.05884 1.21653 1.08239 0.93360 0.91224 1.22008 1.06614 0.97203 0.93307 1.20161 1.15888 0.95011 0.93450 1.17341 0.76293 0.81735 0.86944 1.90738 1.54535 1.82954 1.15004 1.45829 1.67560 1.13338 1.10856 1.21438 1.00986 0.84773 0.93058 1.21734 1.00975 0.94317 0.98351 1.22323 0.98873 0.93071 0.97201 0.90583 1.21627 0.93632 0.86669 0.96767 1.44494 1.38491 1.08073 1.42290 1.19081 1.12338 0.92832 1.10981 0.90516 1.24797 0.98796 0.97245 0.99885 1.69972 1.29263 1.15567 1.42316 0.86127 0.78770 0.79904 0.81043 1.21679 1.21769 1.20751 1.21195 0.91001 0.91004 0.90877 1.22481 0.95017 0.97149 0.98763 0.91835 1.21671 0.95859 1.00163 1.01324 1.20306 1.00749 0.90667 0.89369 1.20568 1.03845 1.00789 0.89889 0.91629 0.91732 0.90624 0.88959 0.89189 0.81784 0.83756 0.76845 0.91106 0.91630 0.91718 0.91424 0.96519 0.94430 0.93899 0.93498 0.94317 0.93820 0.93067 0.92791 0.90539 0.92135 0.88009 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.68 10.24 37.16 0.38 -0.30 16 2 C 0.10 0.41 6.45 -4.04 -0.03 0.39 16 3 N -0.44 -3.49 2.68 -112.52 -0.30 -3.79 16 4 C -0.02 -0.15 11.33 -16.83 -0.19 -0.34 16 5 C -0.17 -1.56 10.56 -37.50 -0.40 -1.96 16 6 C -0.24 -2.84 6.29 -103.35 -0.65 -3.49 16 7 C 0.59 8.49 7.81 -12.59 -0.10 8.39 16 8 O -0.55 -9.71 14.82 5.25 0.08 -9.63 16 9 N -0.73 -9.11 5.55 -61.44 -0.34 -9.45 16 10 C 0.12 1.69 5.55 -4.04 -0.02 1.67 16 11 C -0.12 -1.55 4.84 -26.73 -0.13 -1.68 16 12 C -0.09 -1.65 2.48 -88.47 -0.22 -1.87 16 13 H 0.08 1.37 8.05 -51.92 -0.42 0.95 16 14 C 0.14 2.97 6.04 -2.51 -0.02 2.96 16 15 N -0.61 -16.06 3.40 -170.04 -0.58 -16.64 16 16 C -0.22 -6.47 10.28 -15.06 -0.15 -6.62 16 17 H 0.08 2.15 7.83 -52.49 -0.41 1.74 16 18 C -0.01 -0.33 5.49 -17.43 -0.10 -0.43 16 19 N -0.92 -27.82 10.31 55.49 0.57 -27.24 16 20 Si 0.91 22.79 29.55 -169.99 -5.02 17.77 16 21 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 22 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 23 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 24 C 0.18 4.56 4.97 -3.06 -0.02 4.55 16 25 C -0.11 -2.14 3.01 -88.78 -0.27 -2.41 16 26 H 0.06 1.13 8.04 -51.93 -0.42 0.72 16 27 C -0.13 -2.12 9.17 37.16 0.34 -1.78 16 28 C 0.11 1.11 6.89 -81.88 -0.56 0.55 16 29 C -0.09 -0.87 9.52 36.00 0.34 -0.53 16 30 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 31 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 32 H 0.07 0.17 8.14 -51.93 -0.42 -0.26 16 33 H 0.09 0.23 8.11 -51.93 -0.42 -0.19 16 34 H 0.09 0.31 7.04 -51.93 -0.37 -0.05 16 35 H 0.16 0.76 8.06 -52.48 -0.42 0.34 16 36 H 0.14 1.05 7.70 -52.48 -0.40 0.64 16 37 H 0.40 3.94 7.60 -40.82 -0.31 3.63 16 38 H 0.07 1.12 7.59 -51.93 -0.39 0.73 16 39 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 40 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 41 H 0.07 0.89 8.03 -51.93 -0.42 0.47 16 42 H 0.02 0.36 7.96 -51.93 -0.41 -0.05 16 43 H 0.04 0.80 8.10 -51.93 -0.42 0.38 16 44 H 0.25 7.33 8.31 -40.82 -0.34 6.99 16 45 H 0.05 1.28 7.02 -51.93 -0.36 0.92 16 46 H 0.04 1.07 7.51 -51.93 -0.39 0.68 16 47 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 48 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 49 H 0.05 0.90 8.07 -51.93 -0.42 0.48 16 50 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 51 H 0.06 0.40 7.01 -51.92 -0.36 0.03 16 52 H 0.10 1.18 6.48 -51.93 -0.34 0.84 16 LS Contribution 412.17 15.07 6.21 6.21 Total: -1.00 -35.06 412.17 -10.37 -45.43 By element: Atomic # 1 Polarization: 9.45 SS G_CDS: -9.21 Total: 0.25 kcal Atomic # 6 Polarization: -1.12 SS G_CDS: -1.78 Total: -2.90 kcal Atomic # 7 Polarization: -56.48 SS G_CDS: -0.65 Total: -57.13 kcal Atomic # 8 Polarization: -9.71 SS G_CDS: 0.08 Total: -9.63 kcal Atomic # 14 Polarization: 22.79 SS G_CDS: -5.02 Total: 17.77 kcal Total LS contribution 6.21 Total: 6.21 kcal Total: -35.06 -10.37 -45.43 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001103355318.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.385 kcal (2) G-P(sol) polarization free energy of solvation -35.057 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.328 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.369 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.427 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.958 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds