Wall clock time and date at job start Tue Mar 31 2020 18:01:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46503 * 109.47378 * 2 1 4 4 C 1.36449 * 124.84880 * 265.02968 * 3 2 1 5 5 C 1.34489 * 108.85653 * 179.73053 * 4 3 2 6 6 C 1.46694 * 106.33086 * 359.97438 * 5 4 3 7 7 C 1.47263 * 126.93815 * 179.97438 * 6 5 4 8 8 O 1.21629 * 119.99687 * 203.95804 * 7 6 5 9 9 N 1.34769 * 119.99948 * 23.96229 * 7 6 5 10 10 C 1.47484 * 127.03650 * 5.62212 * 9 7 6 11 11 C 1.54012 * 107.08455 * 154.51847 * 10 9 7 12 12 H 1.09002 * 110.32462 * 120.19400 * 11 10 9 13 13 C 1.52992 * 110.32275 * 242.30834 * 11 10 9 14 14 C 1.54616 * 105.04408 * 1.30484 * 11 10 9 15 15 H 1.09007 * 110.73623 * 263.33389 * 14 11 10 16 16 C 1.52992 * 110.73857 * 140.19001 * 14 11 10 17 17 C 1.53003 * 109.46899 * 174.99959 * 16 14 11 18 18 N 1.46502 * 109.47191 * 180.02562 * 17 16 14 19 19 C 1.36934 * 120.00193 * 179.97438 * 18 17 16 20 20 H 1.08001 * 120.00168 * 359.97438 * 19 18 17 21 21 C 1.38813 * 120.00380 * 179.97438 * 19 18 17 22 22 N 1.31622 * 119.99503 * 359.97438 * 21 19 18 23 23 Si 1.86791 * 120.00446 * 179.97438 * 21 19 18 24 24 H 1.48507 * 109.46999 * 359.97438 * 23 21 19 25 25 H 1.48497 * 109.47480 * 119.99665 * 23 21 19 26 26 H 1.48499 * 109.47161 * 239.99958 * 23 21 19 27 27 C 1.48124 * 127.03140 * 185.30430 * 9 7 6 28 28 C 1.34659 * 124.85425 * 84.71444 * 3 2 1 29 29 C 1.50702 * 125.79830 * 0.25473 * 28 3 2 30 30 H 1.09000 * 109.47126 * 300.00446 * 1 2 3 31 31 H 1.09000 * 109.46978 * 60.00375 * 1 2 3 32 32 H 1.09001 * 109.47241 * 180.02562 * 1 2 3 33 33 H 1.08999 * 109.47808 * 239.99856 * 2 1 3 34 34 H 1.09001 * 109.47493 * 119.99734 * 2 1 3 35 35 H 1.07999 * 125.57190 * 359.70016 * 4 3 2 36 36 H 1.07998 * 126.83437 * 179.97438 * 5 4 3 37 37 H 1.08999 * 109.90989 * 273.87442 * 10 9 7 38 38 H 1.08996 * 109.91826 * 34.96231 * 10 9 7 39 39 H 1.09007 * 109.47513 * 58.54742 * 13 11 10 40 40 H 1.09009 * 109.47241 * 178.54634 * 13 11 10 41 41 H 1.08999 * 109.47361 * 298.54497 * 13 11 10 42 42 H 1.08998 * 109.47086 * 294.99429 * 16 14 11 43 43 H 1.08994 * 109.47457 * 55.00116 * 16 14 11 44 44 H 1.09008 * 109.46781 * 299.99573 * 17 16 14 45 45 H 1.08997 * 109.47778 * 59.99516 * 17 16 14 46 46 H 0.96998 * 119.99807 * 359.97438 * 18 17 16 47 47 H 0.97005 * 119.99645 * 179.97438 * 22 21 19 48 48 H 1.09004 * 110.66173 * 337.76624 * 27 9 7 49 49 H 1.08997 * 110.66056 * 100.88340 * 27 9 7 50 50 H 1.08996 * 109.47148 * 89.99529 * 29 28 3 51 51 H 1.09002 * 109.46936 * 209.99688 * 29 28 3 52 52 H 1.09004 * 109.47131 * 329.99208 * 29 28 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.3698 2.0840 -1.1156 5 6 2.7649 3.3155 -0.7470 6 6 2.6436 3.3676 0.7140 7 6 2.9598 4.5098 1.5882 8 8 3.2375 4.3221 2.7574 9 7 2.9413 5.7629 1.0926 10 6 2.5180 6.1780 -0.2578 11 6 2.0597 7.6450 -0.1573 12 1 2.6627 8.2756 -0.8107 13 6 0.5789 7.7653 -0.5226 14 6 2.2838 8.0350 1.3219 15 1 1.3605 7.9327 1.8922 16 6 2.8297 9.4602 1.4297 17 6 2.9228 9.8605 2.9035 18 7 3.4450 11.2254 3.0068 19 6 3.6156 11.8020 4.2370 20 1 3.3649 11.2507 5.1312 21 6 4.1109 13.0951 4.3349 22 7 4.4169 13.7667 3.2451 23 14 4.3430 13.8819 6.0131 24 1 3.9275 12.9250 7.0701 25 1 5.7728 14.2365 6.2001 26 1 3.5125 15.1096 6.1033 27 6 3.3360 7.0059 1.7950 28 6 2.1790 2.1407 1.1003 29 6 1.8941 1.7119 2.5167 30 1 -0.3633 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3634 -1.0277 0.0005 33 1 1.8934 -0.5138 -0.8899 34 1 1.8934 -0.5138 0.8900 35 1 2.3365 1.7118 -2.1289 36 1 3.1040 4.1084 -1.3972 37 1 3.3556 6.0974 -0.9506 38 1 1.6937 5.5511 -0.5976 39 1 -0.0123 7.1394 0.1460 40 1 0.2631 8.8038 -0.4221 41 1 0.4308 7.4386 -1.5518 42 1 3.8206 9.5048 0.9779 43 1 2.1615 10.1456 0.9086 44 1 1.9318 9.8159 3.3554 45 1 3.5910 9.1751 3.4248 46 1 3.6698 11.7207 2.2036 47 1 4.7627 14.6705 3.3135 48 1 3.2821 6.8708 2.8753 49 1 4.3367 7.3162 1.4946 50 1 2.7916 1.2707 2.9502 51 1 1.5946 2.5789 3.1055 52 1 1.0901 0.9759 2.5188 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001104569132.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:01:26 Heat of formation + Delta-G solvation = 12.266744 kcal Electronic energy + Delta-G solvation = -28732.474803 eV Core-core repulsion = 24925.530663 eV Total energy + Delta-G solvation = -3806.944141 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 333.216 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.67886 -39.80451 -37.73852 -35.06000 -34.48085 -33.05406 -31.97265 -31.82343 -30.36345 -29.57836 -27.37044 -26.58091 -26.12356 -24.51811 -23.69362 -22.62469 -21.64015 -20.53938 -20.13187 -19.86339 -18.47830 -17.39430 -17.02091 -16.30917 -15.85976 -15.58886 -15.26636 -14.91011 -14.57686 -14.37129 -14.19591 -13.76915 -13.57325 -13.46977 -13.26481 -13.18636 -13.11559 -13.03509 -12.91373 -12.73993 -12.60940 -12.30317 -12.11798 -11.96953 -11.84235 -11.72836 -11.57045 -11.25696 -11.06585 -10.92462 -10.77529 -10.48066 -10.33108 -10.17605 -9.88343 -9.76315 -9.59295 -8.84350 -8.80055 -8.60089 -8.29554 -6.83987 -5.69932 -2.97808 1.65591 2.21928 2.45655 3.16819 3.47276 3.48524 3.54185 3.56640 4.13654 4.40399 4.45147 4.52432 4.57426 4.64039 4.66250 4.69869 4.82539 4.94645 5.01629 5.03820 5.15660 5.22893 5.35210 5.38957 5.42119 5.46941 5.50711 5.51600 5.61916 5.62844 5.69839 5.73808 5.74656 5.87264 5.88507 5.94385 6.02747 6.07710 6.13585 6.20687 6.33385 6.39795 6.46535 6.55610 6.60046 6.85446 6.95108 6.98294 6.99085 7.71609 7.78093 8.37556 8.49606 9.60496 10.19644 10.54237 11.53271 Molecular weight = 333.22amu Principal moments of inertia in cm(-1) A = 0.022647 B = 0.002076 C = 0.001970 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1236.089029 B =13484.433502 C =14206.955935 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.096 3.904 3 N -0.442 5.442 4 C -0.020 4.020 5 C -0.166 4.166 6 C -0.228 4.228 7 C 0.608 3.392 8 O -0.550 6.550 9 N -0.616 5.616 10 C 0.108 3.892 11 C -0.105 4.105 12 H 0.087 0.913 13 C -0.141 4.141 14 C -0.091 4.091 15 H 0.082 0.918 16 C -0.114 4.114 17 C 0.151 3.849 18 N -0.734 5.734 19 C -0.235 4.235 20 H 0.071 0.929 21 C -0.017 4.017 22 N -0.935 5.935 23 Si 0.907 3.093 24 H -0.280 1.280 25 H -0.292 1.292 26 H -0.292 1.292 27 C 0.110 3.890 28 C 0.101 3.899 29 C -0.089 4.089 30 H 0.064 0.936 31 H 0.064 0.936 32 H 0.075 0.925 33 H 0.092 0.908 34 H 0.089 0.911 35 H 0.165 0.835 36 H 0.146 0.854 37 H 0.063 0.937 38 H 0.077 0.923 39 H 0.054 0.946 40 H 0.061 0.939 41 H 0.054 0.946 42 H 0.065 0.935 43 H 0.066 0.934 44 H 0.017 0.983 45 H 0.020 0.980 46 H 0.383 0.617 47 H 0.253 0.747 48 H 0.086 0.914 49 H 0.074 0.926 50 H 0.078 0.922 51 H 0.091 0.909 52 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.958 -30.300 -14.214 34.647 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.025 4.025 3 N -0.119 5.119 4 C -0.146 4.146 5 C -0.190 4.190 6 C -0.238 4.238 7 C 0.399 3.601 8 O -0.429 6.429 9 N -0.349 5.349 10 C -0.015 4.015 11 C -0.124 4.124 12 H 0.105 0.895 13 C -0.198 4.198 14 C -0.110 4.110 15 H 0.100 0.900 16 C -0.152 4.152 17 C 0.024 3.976 18 N -0.378 5.378 19 C -0.367 4.367 20 H 0.089 0.911 21 C -0.213 4.213 22 N -0.584 5.584 23 Si 0.738 3.262 24 H -0.205 1.205 25 H -0.219 1.219 26 H -0.219 1.219 27 C -0.012 4.012 28 C -0.015 4.015 29 C -0.146 4.146 30 H 0.083 0.917 31 H 0.083 0.917 32 H 0.094 0.906 33 H 0.111 0.889 34 H 0.108 0.892 35 H 0.182 0.818 36 H 0.164 0.836 37 H 0.081 0.919 38 H 0.096 0.904 39 H 0.073 0.927 40 H 0.080 0.920 41 H 0.073 0.927 42 H 0.083 0.917 43 H 0.085 0.915 44 H 0.035 0.965 45 H 0.037 0.963 46 H 0.216 0.784 47 H 0.063 0.937 48 H 0.104 0.896 49 H 0.092 0.908 50 H 0.097 0.903 51 H 0.110 0.890 52 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -8.917 -30.836 -13.401 34.785 hybrid contribution 0.285 0.723 0.342 0.849 sum -8.632 -30.113 -13.059 33.939 Atomic orbital electron populations 1.22191 0.94190 1.03109 1.03437 1.21882 0.95670 0.80473 1.04509 1.43706 1.50580 1.11790 1.05843 1.21670 1.08395 0.93290 0.91204 1.22146 1.06504 0.97187 0.93204 1.20061 1.15822 0.94333 0.93536 1.16972 0.76423 0.80691 0.85995 1.90769 1.50353 1.84729 1.17089 1.48535 1.65426 1.05900 1.15072 1.22291 0.99374 0.95423 0.84421 1.22186 0.97541 0.95121 0.97536 0.89503 1.21822 0.94817 1.02330 1.00861 1.22265 0.98946 0.94966 0.94872 0.89958 1.21716 1.01055 0.93626 0.98821 1.20687 0.96382 0.87807 0.92752 1.42380 1.77788 1.11382 1.06278 1.19308 1.35271 0.96400 0.85675 0.91140 1.24743 1.02331 0.97178 0.97037 1.69677 1.50813 1.11774 1.26153 0.86111 0.77339 0.79145 0.83614 1.20548 1.21908 1.21937 1.22536 0.97861 0.82079 0.98706 1.20222 1.01609 0.90360 0.89339 1.20470 1.01840 1.02805 0.89523 0.91673 0.91700 0.90625 0.88937 0.89222 0.81798 0.83615 0.91919 0.90434 0.92701 0.91979 0.92730 0.91673 0.91492 0.96493 0.96256 0.78360 0.93664 0.89556 0.90815 0.90299 0.89033 0.91976 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.64 10.24 37.16 0.38 -0.26 16 2 C 0.10 0.42 6.21 -4.04 -0.03 0.39 16 3 N -0.44 -3.51 2.69 -112.52 -0.30 -3.81 16 4 C -0.02 -0.15 11.33 -16.82 -0.19 -0.34 16 5 C -0.17 -1.63 9.26 -37.49 -0.35 -1.98 16 6 C -0.23 -2.85 5.93 -103.35 -0.61 -3.47 16 7 C 0.61 9.26 7.74 -12.60 -0.10 9.17 16 8 O -0.55 -10.10 15.68 5.25 0.08 -10.01 16 9 N -0.62 -8.42 3.29 -171.30 -0.56 -8.98 16 10 C 0.11 1.13 4.97 -2.98 -0.01 1.12 16 11 C -0.10 -1.12 3.17 -89.25 -0.28 -1.40 16 12 H 0.09 0.89 7.85 -51.93 -0.41 0.48 16 13 C -0.14 -1.35 8.90 37.15 0.33 -1.02 16 14 C -0.09 -1.21 2.58 -88.94 -0.23 -1.44 16 15 H 0.08 1.16 7.86 -51.92 -0.41 0.75 16 16 C -0.11 -1.83 4.70 -26.73 -0.13 -1.96 16 17 C 0.15 3.15 6.15 -4.04 -0.02 3.12 16 18 N -0.73 -19.30 5.60 -59.90 -0.34 -19.64 16 19 C -0.24 -6.84 9.99 -15.06 -0.15 -7.00 16 20 H 0.07 2.01 7.83 -52.49 -0.41 1.60 16 21 C -0.02 -0.52 5.50 -17.43 -0.10 -0.61 16 22 N -0.93 -28.97 13.06 55.49 0.72 -28.25 16 23 Si 0.91 23.10 29.55 -169.99 -5.02 18.08 16 24 H -0.28 -6.94 7.11 56.52 0.40 -6.53 16 25 H -0.29 -7.45 7.11 56.52 0.40 -7.05 16 26 H -0.29 -7.43 7.11 56.52 0.40 -7.03 16 27 C 0.11 1.60 5.94 -2.31 -0.01 1.58 16 28 C 0.10 1.07 6.88 -81.89 -0.56 0.51 16 29 C -0.09 -0.83 9.19 36.01 0.33 -0.50 16 30 H 0.06 0.32 7.51 -51.93 -0.39 -0.07 16 31 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 32 H 0.07 0.16 8.14 -51.93 -0.42 -0.27 16 33 H 0.09 0.24 8.11 -51.93 -0.42 -0.18 16 34 H 0.09 0.32 7.74 -51.93 -0.40 -0.08 16 35 H 0.16 0.77 8.06 -52.49 -0.42 0.35 16 36 H 0.15 1.23 6.29 -52.49 -0.33 0.90 16 37 H 0.06 0.58 7.47 -51.93 -0.39 0.19 16 38 H 0.08 0.75 6.42 -51.93 -0.33 0.42 16 39 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 40 H 0.06 0.62 8.14 -51.92 -0.42 0.20 16 41 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 42 H 0.06 1.05 7.99 -51.93 -0.41 0.63 16 43 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 44 H 0.02 0.36 8.14 -51.92 -0.42 -0.06 16 45 H 0.02 0.41 7.67 -51.93 -0.40 0.02 16 46 H 0.38 10.46 7.67 -40.82 -0.31 10.14 16 47 H 0.25 7.56 8.31 -40.82 -0.34 7.22 16 48 H 0.09 1.41 7.79 -51.93 -0.40 1.01 16 49 H 0.07 1.06 7.93 -51.93 -0.41 0.65 16 50 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 51 H 0.09 1.04 7.15 -51.93 -0.37 0.66 16 52 H 0.06 0.41 7.04 -51.93 -0.37 0.04 16 LS Contribution 411.69 15.07 6.20 6.20 Total: -1.00 -35.51 411.69 -10.06 -45.57 By element: Atomic # 1 Polarization: 14.03 SS G_CDS: -9.11 Total: 4.92 kcal Atomic # 6 Polarization: -2.34 SS G_CDS: -1.73 Total: -4.07 kcal Atomic # 7 Polarization: -60.21 SS G_CDS: -0.48 Total: -60.68 kcal Atomic # 8 Polarization: -10.10 SS G_CDS: 0.08 Total: -10.01 kcal Atomic # 14 Polarization: 23.10 SS G_CDS: -5.02 Total: 18.08 kcal Total LS contribution 6.20 Total: 6.20 kcal Total: -35.51 -10.06 -45.57 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001104569132.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.835 kcal (2) G-P(sol) polarization free energy of solvation -35.511 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.324 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.057 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.568 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.267 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds