Wall clock time and date at job start Tue Mar 31 2020 18:01:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46503 * 109.47378 * 2 1 4 4 C 1.36449 * 124.84880 * 265.02968 * 3 2 1 5 5 C 1.34489 * 108.85653 * 179.73053 * 4 3 2 6 6 C 1.46694 * 106.33086 * 359.97438 * 5 4 3 7 7 C 1.47263 * 126.93815 * 179.97438 * 6 5 4 8 8 O 1.21629 * 119.99687 * 203.95804 * 7 6 5 9 9 N 1.34769 * 119.99948 * 23.96229 * 7 6 5 10 10 C 1.47484 * 127.03650 * 5.62212 * 9 7 6 11 11 C 1.54012 * 107.08455 * 154.51847 * 10 9 7 12 12 H 1.09002 * 110.32462 * 120.19400 * 11 10 9 13 13 C 1.52992 * 110.32275 * 242.30834 * 11 10 9 14 14 C 1.54616 * 105.04408 * 1.30484 * 11 10 9 15 15 H 1.09007 * 110.73623 * 263.33389 * 14 11 10 16 16 C 1.52992 * 110.73857 * 140.19001 * 14 11 10 17 17 C 1.53003 * 109.46899 * 174.99959 * 16 14 11 18 18 N 1.46502 * 109.47191 * 180.02562 * 17 16 14 19 19 C 1.36934 * 120.00193 * 179.97438 * 18 17 16 20 20 H 1.08001 * 120.00168 * 359.97438 * 19 18 17 21 21 C 1.38813 * 120.00380 * 179.97438 * 19 18 17 22 22 N 1.31622 * 119.99503 * 359.97438 * 21 19 18 23 23 Si 1.86791 * 120.00446 * 179.97438 * 21 19 18 24 24 H 1.48507 * 109.46999 * 359.97438 * 23 21 19 25 25 H 1.48497 * 109.47480 * 119.99665 * 23 21 19 26 26 H 1.48499 * 109.47161 * 239.99958 * 23 21 19 27 27 C 1.48124 * 127.03140 * 185.30430 * 9 7 6 28 28 C 1.34659 * 124.85425 * 84.71444 * 3 2 1 29 29 C 1.50702 * 125.79830 * 0.25473 * 28 3 2 30 30 H 1.09000 * 109.47126 * 300.00446 * 1 2 3 31 31 H 1.09000 * 109.46978 * 60.00375 * 1 2 3 32 32 H 1.09001 * 109.47241 * 180.02562 * 1 2 3 33 33 H 1.08999 * 109.47808 * 239.99856 * 2 1 3 34 34 H 1.09001 * 109.47493 * 119.99734 * 2 1 3 35 35 H 1.07999 * 125.57190 * 359.70016 * 4 3 2 36 36 H 1.07998 * 126.83437 * 179.97438 * 5 4 3 37 37 H 1.08999 * 109.90989 * 273.87442 * 10 9 7 38 38 H 1.08996 * 109.91826 * 34.96231 * 10 9 7 39 39 H 1.09007 * 109.47513 * 58.54742 * 13 11 10 40 40 H 1.09009 * 109.47241 * 178.54634 * 13 11 10 41 41 H 1.08999 * 109.47361 * 298.54497 * 13 11 10 42 42 H 1.08998 * 109.47086 * 294.99429 * 16 14 11 43 43 H 1.08994 * 109.47457 * 55.00116 * 16 14 11 44 44 H 1.09008 * 109.46781 * 299.99573 * 17 16 14 45 45 H 1.08997 * 109.47778 * 59.99516 * 17 16 14 46 46 H 0.96998 * 119.99807 * 359.97438 * 18 17 16 47 47 H 0.97005 * 119.99645 * 179.97438 * 22 21 19 48 48 H 1.09004 * 110.66173 * 337.76624 * 27 9 7 49 49 H 1.08997 * 110.66056 * 100.88340 * 27 9 7 50 50 H 1.08996 * 109.47148 * 89.99529 * 29 28 3 51 51 H 1.09002 * 109.46936 * 209.99688 * 29 28 3 52 52 H 1.09004 * 109.47131 * 329.99208 * 29 28 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.3698 2.0840 -1.1156 5 6 2.7649 3.3155 -0.7470 6 6 2.6436 3.3676 0.7140 7 6 2.9598 4.5098 1.5882 8 8 3.2375 4.3221 2.7574 9 7 2.9413 5.7629 1.0926 10 6 2.5180 6.1780 -0.2578 11 6 2.0597 7.6450 -0.1573 12 1 2.6627 8.2756 -0.8107 13 6 0.5789 7.7653 -0.5226 14 6 2.2838 8.0350 1.3219 15 1 1.3605 7.9327 1.8922 16 6 2.8297 9.4602 1.4297 17 6 2.9228 9.8605 2.9035 18 7 3.4450 11.2254 3.0068 19 6 3.6156 11.8020 4.2370 20 1 3.3649 11.2507 5.1312 21 6 4.1109 13.0951 4.3349 22 7 4.4169 13.7667 3.2451 23 14 4.3430 13.8819 6.0131 24 1 3.9275 12.9250 7.0701 25 1 5.7728 14.2365 6.2001 26 1 3.5125 15.1096 6.1033 27 6 3.3360 7.0059 1.7950 28 6 2.1790 2.1407 1.1003 29 6 1.8941 1.7119 2.5167 30 1 -0.3633 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3634 -1.0277 0.0005 33 1 1.8934 -0.5138 -0.8899 34 1 1.8934 -0.5138 0.8900 35 1 2.3365 1.7118 -2.1289 36 1 3.1040 4.1084 -1.3972 37 1 3.3556 6.0974 -0.9506 38 1 1.6937 5.5511 -0.5976 39 1 -0.0123 7.1394 0.1460 40 1 0.2631 8.8038 -0.4221 41 1 0.4308 7.4386 -1.5518 42 1 3.8206 9.5048 0.9779 43 1 2.1615 10.1456 0.9086 44 1 1.9318 9.8159 3.3554 45 1 3.5910 9.1751 3.4248 46 1 3.6698 11.7207 2.2036 47 1 4.7627 14.6705 3.3135 48 1 3.2821 6.8708 2.8753 49 1 4.3367 7.3162 1.4946 50 1 2.7916 1.2707 2.9502 51 1 1.5946 2.5789 3.1055 52 1 1.0901 0.9759 2.5188 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001104569132.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:01:25 Heat of formation + Delta-G solvation = -8.828751 kcal Electronic energy + Delta-G solvation = -28733.389572 eV Core-core repulsion = 24925.530663 eV Total energy + Delta-G solvation = -3807.858910 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 333.216 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -42.37382 -40.85256 -38.90316 -36.86131 -35.06457 -34.44958 -33.38438 -32.56428 -31.86448 -30.40467 -28.60612 -27.60076 -26.96664 -25.95446 -24.57483 -23.97796 -22.70737 -21.80135 -21.01555 -20.79923 -19.30994 -19.15862 -18.15947 -17.13767 -16.98984 -16.66485 -16.43843 -16.04749 -15.79137 -15.34829 -15.24804 -15.20916 -14.95007 -14.48791 -14.41406 -14.21651 -14.04298 -13.85621 -13.79895 -13.67386 -13.39859 -13.15178 -13.03823 -12.96779 -12.89280 -12.69580 -12.67178 -12.47030 -12.35964 -12.25617 -12.10897 -12.07673 -11.89805 -11.55006 -11.51114 -11.24768 -10.94148 -10.90891 -9.72461 -9.47955 -9.06021 -9.01133 -7.96830 -5.25640 0.77788 1.45901 1.46994 1.54737 1.57452 1.81780 2.21454 2.47014 2.54892 3.36347 3.46732 3.60902 3.77120 3.80264 3.83824 4.02604 4.10900 4.13513 4.14435 4.26666 4.32250 4.35798 4.41758 4.49901 4.52213 4.56365 4.63043 4.64136 4.69891 4.72059 4.80725 4.83153 4.87280 4.93067 4.94301 4.96011 5.06127 5.07802 5.14588 5.19973 5.25541 5.26078 5.31596 5.38429 5.42587 5.48488 5.58289 5.82282 6.15305 6.26444 6.40907 6.66546 7.26160 7.32280 8.08069 8.32746 9.26831 Molecular weight = 333.22amu Principal moments of inertia in cm(-1) A = 0.022647 B = 0.002076 C = 0.001970 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1236.089029 B =13484.433502 C =14206.955935 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.089 3.911 3 N -0.436 5.436 4 C -0.005 4.005 5 C -0.182 4.182 6 C -0.263 4.263 7 C 0.597 3.403 8 O -0.598 6.598 9 N -0.618 5.618 10 C 0.111 3.889 11 C -0.097 4.097 12 H 0.100 0.900 13 C -0.137 4.137 14 C -0.081 4.081 15 H 0.074 0.926 16 C -0.097 4.097 17 C 0.149 3.851 18 N -0.746 5.746 19 C -0.248 4.248 20 H 0.071 0.929 21 C -0.076 4.076 22 N -0.967 5.967 23 Si 0.975 3.025 24 H -0.269 1.269 25 H -0.291 1.291 26 H -0.289 1.289 27 C 0.109 3.891 28 C 0.091 3.909 29 C -0.085 4.085 30 H 0.049 0.951 31 H 0.061 0.939 32 H 0.096 0.904 33 H 0.119 0.881 34 H 0.097 0.903 35 H 0.203 0.797 36 H 0.158 0.842 37 H 0.082 0.918 38 H 0.090 0.910 39 H 0.047 0.953 40 H 0.057 0.943 41 H 0.078 0.922 42 H 0.067 0.933 43 H 0.072 0.928 44 H 0.014 0.986 45 H 0.013 0.987 46 H 0.376 0.624 47 H 0.252 0.748 48 H 0.057 0.943 49 H 0.073 0.927 50 H 0.077 0.923 51 H 0.063 0.937 52 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.867 -32.373 -16.424 37.618 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C -0.031 4.031 3 N -0.111 5.111 4 C -0.131 4.131 5 C -0.205 4.205 6 C -0.273 4.273 7 C 0.391 3.609 8 O -0.482 6.482 9 N -0.349 5.349 10 C -0.011 4.011 11 C -0.116 4.116 12 H 0.118 0.882 13 C -0.195 4.195 14 C -0.101 4.101 15 H 0.093 0.907 16 C -0.135 4.135 17 C 0.023 3.977 18 N -0.389 5.389 19 C -0.380 4.380 20 H 0.089 0.911 21 C -0.268 4.268 22 N -0.618 5.618 23 Si 0.803 3.197 24 H -0.194 1.194 25 H -0.218 1.218 26 H -0.216 1.216 27 C -0.014 4.014 28 C -0.027 4.027 29 C -0.142 4.142 30 H 0.068 0.932 31 H 0.080 0.920 32 H 0.114 0.886 33 H 0.137 0.863 34 H 0.115 0.885 35 H 0.219 0.781 36 H 0.175 0.825 37 H 0.100 0.900 38 H 0.109 0.891 39 H 0.066 0.934 40 H 0.076 0.924 41 H 0.097 0.903 42 H 0.085 0.915 43 H 0.090 0.910 44 H 0.032 0.968 45 H 0.031 0.969 46 H 0.208 0.792 47 H 0.061 0.939 48 H 0.076 0.924 49 H 0.091 0.909 50 H 0.095 0.905 51 H 0.082 0.918 52 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -9.857 -32.948 -15.646 37.783 hybrid contribution 0.542 1.259 1.015 1.705 sum -9.316 -31.689 -14.631 36.126 Atomic orbital electron populations 1.22163 0.93654 1.04177 1.02503 1.22227 0.96049 0.78571 1.06264 1.43988 1.49325 1.12823 1.05011 1.22253 1.05975 0.92424 0.92477 1.22312 1.07691 0.98740 0.91767 1.20073 1.18252 0.94175 0.94838 1.17561 0.75758 0.81730 0.85883 1.90722 1.52716 1.85500 1.19217 1.48615 1.64936 1.05196 1.16201 1.22468 1.00540 0.95175 0.82962 1.22178 0.98856 0.95363 0.95166 0.88222 1.21802 0.93474 1.02052 1.02141 1.22107 0.97870 0.92835 0.97258 0.90714 1.21542 1.01526 0.95197 0.95273 1.20838 0.95426 0.85251 0.96174 1.42578 1.77991 1.13118 1.05197 1.19667 1.34766 0.96816 0.86776 0.91132 1.25586 1.02618 0.97810 1.00800 1.69820 1.51850 1.11958 1.28190 0.85057 0.77016 0.78118 0.79478 1.19402 1.21776 1.21625 1.22429 0.98347 0.83306 0.97317 1.20342 1.01479 0.90444 0.90422 1.20401 1.02664 1.02255 0.88886 0.93172 0.92036 0.88567 0.86310 0.88461 0.78058 0.82496 0.90017 0.89136 0.93374 0.92392 0.90332 0.91456 0.90970 0.96812 0.96896 0.79236 0.93880 0.92435 0.90856 0.90489 0.91833 0.89173 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.78 10.24 71.98 0.74 -0.04 16 2 C 0.09 0.48 6.21 86.38 0.54 1.02 16 3 N -0.44 -5.86 2.69 -509.91 -1.37 -7.23 16 4 C 0.00 -0.06 11.33 83.12 0.94 0.88 16 5 C -0.18 -3.21 9.26 23.62 0.22 -2.99 16 6 C -0.26 -6.59 5.93 -19.04 -0.11 -6.70 16 7 C 0.60 19.08 7.74 86.62 0.67 19.75 16 8 O -0.60 -23.72 15.68 -4.12 -0.06 -23.78 16 9 N -0.62 -17.22 3.29 -814.11 -2.68 -19.90 16 10 C 0.11 2.15 4.97 86.53 0.43 2.58 16 11 C -0.10 -1.90 3.17 -9.90 -0.03 -1.94 16 12 H 0.10 1.77 7.85 -2.39 -0.02 1.76 16 13 C -0.14 -2.33 8.90 71.98 0.64 -1.69 16 14 C -0.08 -2.17 2.58 -9.70 -0.03 -2.20 16 15 H 0.07 2.14 7.86 -2.38 -0.02 2.12 16 16 C -0.10 -3.13 4.70 30.59 0.14 -2.98 16 17 C 0.15 6.39 6.15 86.38 0.53 6.92 16 18 N -0.75 -40.01 5.60 -343.44 -1.92 -41.94 16 19 C -0.25 -14.66 9.99 84.03 0.84 -13.82 16 20 H 0.07 4.07 7.83 -2.91 -0.02 4.05 16 21 C -0.08 -4.53 5.50 84.86 0.47 -4.06 16 22 N -0.97 -60.66 13.06 21.65 0.28 -60.38 16 23 Si 0.97 47.88 29.55 68.60 2.03 49.91 16 24 H -0.27 -12.61 7.11 99.48 0.71 -11.91 16 25 H -0.29 -14.16 7.11 99.48 0.71 -13.45 16 26 H -0.29 -14.01 7.11 99.48 0.71 -13.30 16 27 C 0.11 3.30 5.94 86.61 0.51 3.81 16 28 C 0.09 1.90 6.88 41.78 0.29 2.19 16 29 C -0.08 -1.61 9.19 71.24 0.65 -0.96 16 30 H 0.05 0.40 7.51 -2.39 -0.02 0.38 16 31 H 0.06 0.35 8.14 -2.39 -0.02 0.33 16 32 H 0.10 0.07 8.14 -2.39 -0.02 0.05 16 33 H 0.12 0.08 8.11 -2.39 -0.02 0.06 16 34 H 0.10 0.42 7.74 -2.39 -0.02 0.40 16 35 H 0.20 0.89 8.06 -2.91 -0.02 0.87 16 36 H 0.16 2.25 6.29 -2.91 -0.02 2.23 16 37 H 0.08 1.31 7.47 -2.39 -0.02 1.30 16 38 H 0.09 1.56 6.42 -2.39 -0.02 1.55 16 39 H 0.05 0.89 8.14 -2.38 -0.02 0.87 16 40 H 0.06 1.05 8.14 -2.38 -0.02 1.03 16 41 H 0.08 0.99 8.14 -2.39 -0.02 0.97 16 42 H 0.07 2.15 7.99 -2.39 -0.02 2.13 16 43 H 0.07 2.27 8.14 -2.39 -0.02 2.25 16 44 H 0.01 0.60 8.14 -2.38 -0.02 0.58 16 45 H 0.01 0.58 7.67 -2.39 -0.02 0.56 16 46 H 0.38 20.93 7.67 -92.71 -0.71 20.22 16 47 H 0.25 15.20 8.31 -92.70 -0.77 14.43 16 48 H 0.06 2.05 7.79 -2.39 -0.02 2.03 16 49 H 0.07 2.20 7.93 -2.39 -0.02 2.18 16 50 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16 51 H 0.06 1.57 7.15 -2.39 -0.02 1.56 16 52 H 0.09 1.11 7.04 -2.39 -0.02 1.09 16 Total: -1.00 -79.69 411.69 3.90 -75.79 By element: Atomic # 1 Polarization: 27.59 SS G_CDS: 0.18 Total: 27.77 kcal Atomic # 6 Polarization: -7.68 SS G_CDS: 7.44 Total: -0.24 kcal Atomic # 7 Polarization: -123.76 SS G_CDS: -5.69 Total: -129.45 kcal Atomic # 8 Polarization: -23.72 SS G_CDS: -0.06 Total: -23.78 kcal Atomic # 14 Polarization: 47.88 SS G_CDS: 2.03 Total: 49.91 kcal Total: -79.69 3.90 -75.79 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001104569132.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.960 kcal (2) G-P(sol) polarization free energy of solvation -79.686 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.727 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.898 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.788 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.829 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds