Wall clock time and date at job start Tue Mar 31 2020 18:02:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46499 * 109.47297 * 2 1 4 4 C 1.36452 * 124.85075 * 265.02626 * 3 2 1 5 5 C 1.34490 * 108.85513 * 179.72572 * 4 3 2 6 6 C 1.46685 * 106.32930 * 0.37683 * 5 4 3 7 7 C 1.47269 * 126.94099 * 179.88735 * 6 5 4 8 8 O 1.21627 * 120.00068 * 179.68162 * 7 6 5 9 9 N 1.34777 * 119.99741 * 359.68919 * 7 6 5 10 10 C 1.46501 * 120.00219 * 180.02562 * 9 7 6 11 11 C 1.52991 * 109.47625 * 176.54821 * 10 9 7 12 12 N 1.46499 * 109.47221 * 54.62810 * 11 10 9 13 13 C 1.36942 * 120.00103 * 62.77587 * 12 11 10 14 14 H 1.08000 * 119.99556 * 354.57928 * 13 12 11 15 15 C 1.38803 * 120.00176 * 174.57272 * 13 12 11 16 16 N 1.31627 * 120.00439 * 359.97438 * 15 13 12 17 17 Si 1.86796 * 120.00197 * 179.97438 * 15 13 12 18 18 H 1.48502 * 109.47356 * 90.00139 * 17 15 13 19 19 H 1.48500 * 109.47445 * 210.00135 * 17 15 13 20 20 H 1.48501 * 109.47063 * 330.00551 * 17 15 13 21 21 C 1.52997 * 109.47374 * 174.63201 * 11 10 9 22 22 C 1.53005 * 109.47249 * 179.97438 * 21 11 10 23 23 C 1.53002 * 109.46897 * 299.99665 * 22 21 11 24 24 C 1.53003 * 109.47040 * 60.00390 * 23 22 21 25 25 C 1.53005 * 109.46957 * 299.99573 * 24 23 22 26 26 C 1.34656 * 124.84993 * 84.99992 * 3 2 1 27 27 C 1.50702 * 125.80270 * 359.97438 * 26 3 2 28 28 H 1.08996 * 109.46508 * 179.97438 * 1 2 3 29 29 H 1.08993 * 109.47038 * 299.99796 * 1 2 3 30 30 H 1.09000 * 109.46930 * 59.99828 * 1 2 3 31 31 H 1.09005 * 109.47387 * 240.00146 * 2 1 3 32 32 H 1.09000 * 109.47513 * 120.00660 * 2 1 3 33 33 H 1.08003 * 125.57200 * 0.02562 * 4 3 2 34 34 H 1.07999 * 126.83241 * 180.25406 * 5 4 3 35 35 H 0.97001 * 120.00211 * 359.97438 * 9 7 6 36 36 H 1.08996 * 109.47351 * 56.53624 * 10 9 7 37 37 H 1.09009 * 109.46355 * 296.54805 * 10 9 7 38 38 H 0.97003 * 120.00508 * 243.05008 * 12 11 10 39 39 H 0.96996 * 120.00326 * 179.97438 * 16 15 13 40 40 H 1.09004 * 109.46990 * 299.99730 * 21 11 10 41 41 H 1.08995 * 109.47636 * 59.99777 * 21 11 10 42 42 H 1.08998 * 109.47142 * 179.97438 * 22 21 11 43 43 H 1.09003 * 109.46859 * 59.99728 * 22 21 11 44 44 H 1.08994 * 109.47042 * 300.00179 * 23 22 21 45 45 H 1.08994 * 109.47227 * 179.97438 * 23 22 21 46 46 H 1.08996 * 109.47347 * 180.02562 * 24 23 22 47 47 H 1.09003 * 109.47561 * 59.99419 * 24 23 22 48 48 H 1.08994 * 109.47421 * 300.00392 * 25 24 23 49 49 H 1.08998 * 109.47142 * 180.02562 * 25 24 23 50 50 H 1.08989 * 109.47317 * 270.00452 * 27 26 3 51 51 H 1.08997 * 109.46392 * 30.00452 * 27 26 3 52 52 H 1.09003 * 109.46871 * 149.99952 * 27 26 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.3698 2.0840 -1.1156 5 6 2.7648 3.3156 -0.7469 6 6 2.6527 3.3643 0.7148 7 6 2.9737 4.5047 1.5896 8 8 2.8274 4.4081 2.7932 9 7 3.4296 5.6555 1.0564 10 6 3.7496 6.7899 1.9266 11 6 4.3233 7.9319 1.0856 12 7 3.3892 8.2604 0.0060 13 6 2.1370 8.7285 0.3027 14 1 1.8066 8.7730 1.3300 15 6 1.2925 9.1460 -0.7167 16 7 1.6954 9.0925 -1.9686 17 14 -0.4159 9.7840 -0.3120 18 1 -0.3578 11.2520 -0.0959 19 1 -1.3356 9.4856 -1.4391 20 1 -0.9124 9.1215 0.9208 21 6 4.5324 9.1620 1.9710 22 6 5.1068 10.3040 1.1301 23 6 6.4473 9.8724 0.5318 24 6 6.2382 8.6423 -0.3536 25 6 5.6638 7.5004 0.4873 26 6 2.1841 2.1387 1.1008 27 6 1.9003 1.7095 2.5173 28 1 -0.3632 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8899 30 1 -0.3633 0.5139 -0.8900 31 1 1.8934 -0.5138 -0.8900 32 1 1.8934 -0.5139 0.8899 33 1 2.3320 1.7135 -2.1294 34 1 3.0999 4.1098 -1.3974 35 1 3.5466 5.7325 0.0966 36 1 4.4843 6.4814 2.6702 37 1 2.8438 7.1286 2.4297 38 1 3.6562 8.1425 -0.9191 39 1 1.1051 9.3839 -2.6810 40 1 3.5776 9.4692 2.3976 41 1 5.2274 8.9177 2.7743 42 1 5.2554 11.1805 1.7608 43 1 4.4121 10.5485 0.3265 44 1 7.1419 9.6279 1.3354 45 1 6.8563 10.6857 -0.0676 46 1 7.1931 8.3346 -0.7795 47 1 5.5434 8.8868 -1.1572 48 1 6.3584 7.2558 1.2908 49 1 5.5152 6.6239 -0.1434 50 1 0.8669 1.9476 2.7690 51 1 2.0586 0.6351 2.6099 52 1 2.5704 2.2354 3.1974 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001115686315.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:02:25 Heat of formation + Delta-G solvation = 0.673229 kcal Electronic energy + Delta-G solvation = -30116.095502 eV Core-core repulsion = 26308.648629 eV Total energy + Delta-G solvation = -3807.446873 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 333.216 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.24609 -39.16416 -37.96109 -34.27224 -34.12242 -33.11994 -31.44561 -31.06977 -30.15547 -29.41036 -28.39743 -26.42165 -25.14923 -23.70389 -23.58683 -22.13057 -21.65141 -20.39259 -19.53186 -18.79437 -18.15096 -17.25277 -16.99746 -15.83369 -15.29667 -15.10749 -14.89354 -14.72766 -14.36880 -14.06735 -13.87038 -13.54810 -13.41807 -13.32992 -13.19334 -12.84056 -12.77460 -12.68276 -12.50340 -12.24272 -12.01842 -11.82908 -11.76429 -11.61334 -11.51917 -11.46653 -11.31714 -11.00665 -10.81616 -10.69650 -10.45940 -10.10383 -9.96960 -9.71702 -9.54624 -9.25661 -9.18386 -8.79450 -8.49020 -8.20629 -7.87993 -6.91858 -5.72735 -3.00668 2.05536 2.64318 2.84162 3.46749 3.53282 3.54909 4.05931 4.16544 4.43130 4.64292 4.70535 4.78461 4.90798 5.05798 5.28960 5.31072 5.31906 5.34549 5.35566 5.37686 5.61662 5.66875 5.69394 5.70744 5.76330 5.81878 5.83864 5.92620 6.06927 6.11400 6.13230 6.13805 6.20615 6.25042 6.29720 6.35724 6.46686 6.53746 6.62851 6.69466 6.88076 6.90798 6.93265 6.98856 7.08656 7.22390 7.27379 7.32902 7.38662 7.79540 8.38943 8.45738 9.02725 9.58201 10.11684 10.48265 11.49447 Molecular weight = 333.22amu Principal moments of inertia in cm(-1) A = 0.010983 B = 0.003739 C = 0.003204 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2548.856984 B = 7487.748166 C = 8737.226119 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.098 3.902 3 N -0.445 5.445 4 C -0.025 4.025 5 C -0.158 4.158 6 C -0.226 4.226 7 C 0.585 3.415 8 O -0.571 6.571 9 N -0.695 5.695 10 C 0.118 3.882 11 C 0.192 3.808 12 N -0.709 5.709 13 C -0.225 4.225 14 H 0.068 0.932 15 C -0.009 4.009 16 N -0.932 5.932 17 Si 0.898 3.102 18 H -0.292 1.292 19 H -0.294 1.294 20 H -0.283 1.283 21 C -0.115 4.115 22 C -0.109 4.109 23 C -0.112 4.112 24 C -0.115 4.115 25 C -0.113 4.113 26 C 0.096 3.904 27 C -0.089 4.089 28 H 0.072 0.928 29 H 0.064 0.936 30 H 0.064 0.936 31 H 0.090 0.910 32 H 0.087 0.913 33 H 0.163 0.837 34 H 0.147 0.853 35 H 0.402 0.598 36 H 0.050 0.950 37 H 0.061 0.939 38 H 0.384 0.616 39 H 0.253 0.747 40 H 0.063 0.937 41 H 0.043 0.957 42 H 0.043 0.957 43 H 0.083 0.917 44 H 0.048 0.952 45 H 0.050 0.950 46 H 0.047 0.953 47 H 0.074 0.926 48 H 0.058 0.942 49 H 0.057 0.943 50 H 0.073 0.927 51 H 0.056 0.944 52 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.292 -15.373 2.503 16.450 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.024 4.024 3 N -0.123 5.123 4 C -0.150 4.150 5 C -0.183 4.183 6 C -0.236 4.236 7 C 0.373 3.627 8 O -0.453 6.453 9 N -0.344 5.344 10 C -0.009 4.009 11 C 0.100 3.900 12 N -0.351 5.351 13 C -0.356 4.356 14 H 0.086 0.914 15 C -0.204 4.204 16 N -0.581 5.581 17 Si 0.730 3.270 18 H -0.219 1.219 19 H -0.220 1.220 20 H -0.209 1.209 21 C -0.154 4.154 22 C -0.147 4.147 23 C -0.149 4.149 24 C -0.153 4.153 25 C -0.151 4.151 26 C -0.020 4.020 27 C -0.146 4.146 28 H 0.091 0.909 29 H 0.083 0.917 30 H 0.083 0.917 31 H 0.108 0.892 32 H 0.105 0.895 33 H 0.180 0.820 34 H 0.164 0.836 35 H 0.238 0.762 36 H 0.069 0.931 37 H 0.079 0.921 38 H 0.219 0.781 39 H 0.063 0.937 40 H 0.082 0.918 41 H 0.062 0.938 42 H 0.061 0.939 43 H 0.102 0.898 44 H 0.067 0.933 45 H 0.069 0.931 46 H 0.066 0.934 47 H 0.093 0.907 48 H 0.076 0.924 49 H 0.076 0.924 50 H 0.091 0.909 51 H 0.075 0.925 52 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 4.926 -15.671 3.361 16.767 hybrid contribution -1.062 0.441 -0.817 1.410 sum 3.865 -15.231 2.543 15.918 Atomic orbital electron populations 1.22175 0.94373 1.02793 1.03557 1.21820 0.95588 0.80833 1.04126 1.43663 1.50923 1.11741 1.05925 1.21610 1.08933 0.93432 0.91018 1.22103 1.05795 0.96850 0.93515 1.20249 1.14964 0.94840 0.93523 1.17311 0.76558 0.82012 0.86774 1.90661 1.55892 1.83588 1.15156 1.45530 1.65515 1.12014 1.11361 1.21809 0.99731 0.86656 0.92692 1.19810 0.89045 0.91477 0.89706 1.42431 1.11758 1.77706 1.03202 1.19073 0.90243 1.33580 0.92704 0.91382 1.24628 0.98265 1.02200 0.95354 1.69644 1.36295 1.54012 0.98121 0.86320 0.85003 0.78694 0.77004 1.21919 1.22046 1.20917 1.21792 1.00169 0.96294 0.97190 1.21373 0.96529 0.96638 1.00151 1.21466 0.97630 0.97378 0.98474 1.21476 0.99861 0.95139 0.98812 1.21683 0.96453 0.97806 0.99175 1.20219 1.01698 0.90895 0.89185 1.20508 1.03590 1.00333 0.90204 0.90873 0.91687 0.91693 0.89177 0.89459 0.81959 0.83578 0.76177 0.93133 0.92072 0.78100 0.93746 0.91802 0.93782 0.93872 0.89828 0.93286 0.93119 0.93378 0.90726 0.92360 0.92396 0.90868 0.92512 0.88145 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.25 10.24 37.16 0.38 -0.87 16 2 C 0.10 0.76 6.45 -4.04 -0.03 0.73 16 3 N -0.44 -5.33 2.69 -112.52 -0.30 -5.63 16 4 C -0.02 -0.31 11.33 -16.82 -0.19 -0.50 16 5 C -0.16 -2.41 10.56 -37.50 -0.40 -2.81 16 6 C -0.23 -3.89 6.29 -103.35 -0.65 -4.54 16 7 C 0.59 11.52 7.81 -12.59 -0.10 11.42 16 8 O -0.57 -12.38 14.81 5.25 0.08 -12.30 16 9 N -0.70 -13.26 5.09 -61.43 -0.31 -13.57 16 10 C 0.12 2.27 4.36 -4.05 -0.02 2.25 16 11 C 0.19 3.54 0.41 -131.82 -0.05 3.49 16 12 N -0.71 -15.79 3.40 -47.24 -0.16 -15.95 16 13 C -0.22 -5.80 8.70 -15.06 -0.13 -5.93 16 14 H 0.07 1.79 6.77 -52.49 -0.36 1.44 16 15 C -0.01 -0.24 5.50 -17.43 -0.10 -0.34 16 16 N -0.93 -26.68 13.07 55.49 0.73 -25.95 16 17 Si 0.90 22.38 29.55 -169.99 -5.02 17.36 16 18 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 19 H -0.29 -7.46 7.11 56.52 0.40 -7.06 16 20 H -0.28 -7.07 7.11 56.52 0.40 -6.67 16 21 C -0.11 -2.05 4.52 -26.73 -0.12 -2.17 16 22 C -0.11 -1.90 5.77 -26.73 -0.15 -2.06 16 23 C -0.11 -1.70 5.92 -26.73 -0.16 -1.86 16 24 C -0.12 -1.80 5.75 -26.73 -0.15 -1.96 16 25 C -0.11 -1.81 4.65 -26.72 -0.12 -1.94 16 26 C 0.10 1.41 6.89 -81.88 -0.56 0.85 16 27 C -0.09 -1.13 9.52 36.01 0.34 -0.79 16 28 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 29 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 30 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.09 0.52 8.11 -51.93 -0.42 0.10 16 32 H 0.09 0.57 7.05 -51.93 -0.37 0.20 16 33 H 0.16 1.52 8.06 -52.48 -0.42 1.10 16 34 H 0.15 2.15 7.70 -52.49 -0.40 1.74 16 35 H 0.40 7.54 6.51 -40.82 -0.27 7.27 16 36 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 37 H 0.06 1.34 7.51 -51.92 -0.39 0.95 16 38 H 0.38 9.16 6.64 -40.82 -0.27 8.89 16 39 H 0.25 7.17 8.31 -40.82 -0.34 6.83 16 40 H 0.06 1.25 7.23 -51.93 -0.38 0.88 16 41 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 42 H 0.04 0.69 8.14 -51.93 -0.42 0.26 16 43 H 0.08 1.75 7.61 -51.93 -0.39 1.35 16 44 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 45 H 0.05 0.73 8.14 -51.93 -0.42 0.30 16 46 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 47 H 0.07 1.35 6.93 -51.93 -0.36 0.99 16 48 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 49 H 0.06 0.92 7.28 -51.93 -0.38 0.54 16 50 H 0.07 0.91 8.14 -51.94 -0.42 0.49 16 51 H 0.06 0.54 7.02 -51.93 -0.36 0.17 16 52 H 0.10 1.48 6.47 -51.93 -0.34 1.14 16 LS Contribution 403.34 15.07 6.08 6.08 Total: -1.00 -30.99 403.34 -10.02 -41.01 By element: Atomic # 1 Polarization: 24.85 SS G_CDS: -8.89 Total: 15.96 kcal Atomic # 6 Polarization: -4.79 SS G_CDS: -2.21 Total: -7.00 kcal Atomic # 7 Polarization: -61.05 SS G_CDS: -0.05 Total: -61.10 kcal Atomic # 8 Polarization: -12.38 SS G_CDS: 0.08 Total: -12.30 kcal Atomic # 14 Polarization: 22.38 SS G_CDS: -5.02 Total: 17.36 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -30.99 -10.02 -41.01 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001115686315.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.687 kcal (2) G-P(sol) polarization free energy of solvation -30.995 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.692 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.019 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.014 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.673 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds