Wall clock time and date at job start Tue Mar 31 2020 18:02:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46499 * 109.47297 * 2 1 4 4 C 1.36452 * 124.85075 * 265.02626 * 3 2 1 5 5 C 1.34490 * 108.85513 * 179.72572 * 4 3 2 6 6 C 1.46685 * 106.32930 * 0.37683 * 5 4 3 7 7 C 1.47269 * 126.94099 * 179.88735 * 6 5 4 8 8 O 1.21627 * 120.00068 * 179.68162 * 7 6 5 9 9 N 1.34777 * 119.99741 * 359.68919 * 7 6 5 10 10 C 1.46501 * 120.00219 * 180.02562 * 9 7 6 11 11 C 1.52991 * 109.47625 * 176.54821 * 10 9 7 12 12 N 1.46499 * 109.47221 * 54.62810 * 11 10 9 13 13 C 1.36942 * 120.00103 * 62.77587 * 12 11 10 14 14 H 1.08000 * 119.99556 * 354.57928 * 13 12 11 15 15 C 1.38803 * 120.00176 * 174.57272 * 13 12 11 16 16 N 1.31627 * 120.00439 * 359.97438 * 15 13 12 17 17 Si 1.86796 * 120.00197 * 179.97438 * 15 13 12 18 18 H 1.48502 * 109.47356 * 90.00139 * 17 15 13 19 19 H 1.48500 * 109.47445 * 210.00135 * 17 15 13 20 20 H 1.48501 * 109.47063 * 330.00551 * 17 15 13 21 21 C 1.52997 * 109.47374 * 174.63201 * 11 10 9 22 22 C 1.53005 * 109.47249 * 179.97438 * 21 11 10 23 23 C 1.53002 * 109.46897 * 299.99665 * 22 21 11 24 24 C 1.53003 * 109.47040 * 60.00390 * 23 22 21 25 25 C 1.53005 * 109.46957 * 299.99573 * 24 23 22 26 26 C 1.34656 * 124.84993 * 84.99992 * 3 2 1 27 27 C 1.50702 * 125.80270 * 359.97438 * 26 3 2 28 28 H 1.08996 * 109.46508 * 179.97438 * 1 2 3 29 29 H 1.08993 * 109.47038 * 299.99796 * 1 2 3 30 30 H 1.09000 * 109.46930 * 59.99828 * 1 2 3 31 31 H 1.09005 * 109.47387 * 240.00146 * 2 1 3 32 32 H 1.09000 * 109.47513 * 120.00660 * 2 1 3 33 33 H 1.08003 * 125.57200 * 0.02562 * 4 3 2 34 34 H 1.07999 * 126.83241 * 180.25406 * 5 4 3 35 35 H 0.97001 * 120.00211 * 359.97438 * 9 7 6 36 36 H 1.08996 * 109.47351 * 56.53624 * 10 9 7 37 37 H 1.09009 * 109.46355 * 296.54805 * 10 9 7 38 38 H 0.97003 * 120.00508 * 243.05008 * 12 11 10 39 39 H 0.96996 * 120.00326 * 179.97438 * 16 15 13 40 40 H 1.09004 * 109.46990 * 299.99730 * 21 11 10 41 41 H 1.08995 * 109.47636 * 59.99777 * 21 11 10 42 42 H 1.08998 * 109.47142 * 179.97438 * 22 21 11 43 43 H 1.09003 * 109.46859 * 59.99728 * 22 21 11 44 44 H 1.08994 * 109.47042 * 300.00179 * 23 22 21 45 45 H 1.08994 * 109.47227 * 179.97438 * 23 22 21 46 46 H 1.08996 * 109.47347 * 180.02562 * 24 23 22 47 47 H 1.09003 * 109.47561 * 59.99419 * 24 23 22 48 48 H 1.08994 * 109.47421 * 300.00392 * 25 24 23 49 49 H 1.08998 * 109.47142 * 180.02562 * 25 24 23 50 50 H 1.08989 * 109.47317 * 270.00452 * 27 26 3 51 51 H 1.08997 * 109.46392 * 30.00452 * 27 26 3 52 52 H 1.09003 * 109.46871 * 149.99952 * 27 26 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.3698 2.0840 -1.1156 5 6 2.7648 3.3156 -0.7469 6 6 2.6527 3.3643 0.7148 7 6 2.9737 4.5047 1.5896 8 8 2.8274 4.4081 2.7932 9 7 3.4296 5.6555 1.0564 10 6 3.7496 6.7899 1.9266 11 6 4.3233 7.9319 1.0856 12 7 3.3892 8.2604 0.0060 13 6 2.1370 8.7285 0.3027 14 1 1.8066 8.7730 1.3300 15 6 1.2925 9.1460 -0.7167 16 7 1.6954 9.0925 -1.9686 17 14 -0.4159 9.7840 -0.3120 18 1 -0.3578 11.2520 -0.0959 19 1 -1.3356 9.4856 -1.4391 20 1 -0.9124 9.1215 0.9208 21 6 4.5324 9.1620 1.9710 22 6 5.1068 10.3040 1.1301 23 6 6.4473 9.8724 0.5318 24 6 6.2382 8.6423 -0.3536 25 6 5.6638 7.5004 0.4873 26 6 2.1841 2.1387 1.1008 27 6 1.9003 1.7095 2.5173 28 1 -0.3632 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8899 30 1 -0.3633 0.5139 -0.8900 31 1 1.8934 -0.5138 -0.8900 32 1 1.8934 -0.5139 0.8899 33 1 2.3320 1.7135 -2.1294 34 1 3.0999 4.1098 -1.3974 35 1 3.5466 5.7325 0.0966 36 1 4.4843 6.4814 2.6702 37 1 2.8438 7.1286 2.4297 38 1 3.6562 8.1425 -0.9191 39 1 1.1051 9.3839 -2.6810 40 1 3.5776 9.4692 2.3976 41 1 5.2274 8.9177 2.7743 42 1 5.2554 11.1805 1.7608 43 1 4.4121 10.5485 0.3265 44 1 7.1419 9.6279 1.3354 45 1 6.8563 10.6857 -0.0676 46 1 7.1931 8.3346 -0.7795 47 1 5.5434 8.8868 -1.1572 48 1 6.3584 7.2558 1.2908 49 1 5.5152 6.6239 -0.1434 50 1 0.8669 1.9476 2.7690 51 1 2.0586 0.6351 2.6099 52 1 2.5704 2.2354 3.1974 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001115686315.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:02:24 Heat of formation + Delta-G solvation = -16.604236 kcal Electronic energy + Delta-G solvation = -30116.844709 eV Core-core repulsion = 26308.648629 eV Total energy + Delta-G solvation = -3808.196080 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 333.216 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -42.30191 -40.67230 -39.45070 -35.81193 -35.06020 -34.85366 -32.78674 -32.47934 -31.54132 -30.61258 -29.91673 -27.60122 -26.43755 -25.68611 -24.46207 -23.47220 -22.87074 -21.75998 -20.83635 -19.99567 -19.65290 -18.97776 -18.32812 -16.94262 -16.87045 -16.50978 -16.27794 -15.87361 -15.81589 -15.45931 -15.43987 -15.03302 -14.81990 -14.38876 -14.30009 -14.21209 -14.03074 -13.76252 -13.60980 -13.45137 -13.38963 -13.19668 -12.97786 -12.89564 -12.81190 -12.71931 -12.58206 -12.48665 -12.38042 -12.09389 -12.04999 -11.86842 -11.66155 -11.29683 -11.07701 -10.84978 -10.68384 -10.62738 -9.88108 -9.44894 -9.04442 -8.88051 -7.85558 -5.09499 0.82487 1.44034 1.46079 1.52104 1.54473 1.92052 2.57097 2.64635 2.73947 3.47240 3.83404 3.84142 3.84662 3.95594 4.03587 4.05944 4.13628 4.15685 4.22893 4.36329 4.43505 4.44416 4.50859 4.61187 4.69096 4.70269 4.77938 4.78831 4.82727 4.83594 4.87713 4.93107 4.98199 5.03022 5.09059 5.10772 5.19923 5.23200 5.23688 5.32001 5.48862 5.51422 5.53314 5.62285 5.64371 5.78296 5.83019 5.84084 6.16179 6.37394 6.43115 6.86424 7.45952 7.50112 8.18915 8.45400 9.36960 Molecular weight = 333.22amu Principal moments of inertia in cm(-1) A = 0.010983 B = 0.003739 C = 0.003204 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2548.856984 B = 7487.748166 C = 8737.226119 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.090 3.910 3 N -0.436 5.436 4 C -0.006 4.006 5 C -0.188 4.188 6 C -0.271 4.271 7 C 0.577 3.423 8 O -0.600 6.600 9 N -0.695 5.695 10 C 0.125 3.875 11 C 0.191 3.809 12 N -0.708 5.708 13 C -0.205 4.205 14 H 0.059 0.941 15 C -0.063 4.063 16 N -0.959 5.959 17 Si 0.945 3.055 18 H -0.291 1.291 19 H -0.299 1.299 20 H -0.286 1.286 21 C -0.114 4.114 22 C -0.106 4.106 23 C -0.107 4.107 24 C -0.112 4.112 25 C -0.107 4.107 26 C 0.097 3.903 27 C -0.085 4.085 28 H 0.100 0.900 29 H 0.048 0.952 30 H 0.053 0.947 31 H 0.119 0.881 32 H 0.105 0.895 33 H 0.200 0.800 34 H 0.140 0.860 35 H 0.403 0.597 36 H 0.063 0.937 37 H 0.027 0.973 38 H 0.377 0.623 39 H 0.246 0.754 40 H 0.038 0.962 41 H 0.072 0.928 42 H 0.058 0.942 43 H 0.040 0.960 44 H 0.074 0.926 45 H 0.060 0.940 46 H 0.075 0.925 47 H 0.043 0.957 48 H 0.081 0.919 49 H 0.057 0.943 50 H 0.072 0.928 51 H 0.093 0.907 52 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.560 -17.747 2.518 19.087 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.030 4.030 3 N -0.112 5.112 4 C -0.132 4.132 5 C -0.212 4.212 6 C -0.280 4.280 7 C 0.367 3.633 8 O -0.485 6.485 9 N -0.344 5.344 10 C -0.002 4.002 11 C 0.100 3.900 12 N -0.349 5.349 13 C -0.338 4.338 14 H 0.077 0.923 15 C -0.255 4.255 16 N -0.611 5.611 17 Si 0.778 3.222 18 H -0.218 1.218 19 H -0.226 1.226 20 H -0.212 1.212 21 C -0.153 4.153 22 C -0.143 4.143 23 C -0.144 4.144 24 C -0.149 4.149 25 C -0.145 4.145 26 C -0.022 4.022 27 C -0.142 4.142 28 H 0.119 0.881 29 H 0.067 0.933 30 H 0.072 0.928 31 H 0.137 0.863 32 H 0.123 0.877 33 H 0.217 0.783 34 H 0.158 0.842 35 H 0.239 0.761 36 H 0.081 0.919 37 H 0.046 0.954 38 H 0.210 0.790 39 H 0.055 0.945 40 H 0.057 0.943 41 H 0.091 0.909 42 H 0.077 0.923 43 H 0.059 0.941 44 H 0.093 0.907 45 H 0.079 0.921 46 H 0.093 0.907 47 H 0.062 0.938 48 H 0.100 0.900 49 H 0.076 0.924 50 H 0.091 0.909 51 H 0.112 0.888 52 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 6.205 -18.065 3.396 19.400 hybrid contribution -1.449 1.066 -0.758 1.952 sum 4.756 -16.999 2.637 17.848 Atomic orbital electron populations 1.22163 0.94030 1.04201 1.02207 1.22247 0.95794 0.78432 1.06513 1.43988 1.49349 1.13057 1.04829 1.22114 1.06255 0.92348 0.92531 1.22169 1.07959 0.98393 0.92667 1.20277 1.18105 0.95271 0.94390 1.17811 0.75905 0.82680 0.86866 1.90624 1.57262 1.84205 1.16395 1.45536 1.65642 1.11957 1.11239 1.21703 0.98467 0.87041 0.92991 1.20004 0.89675 0.91450 0.88821 1.42448 1.11380 1.77199 1.03827 1.19178 0.91365 1.31272 0.91948 0.92320 1.25126 1.00845 1.03992 0.95544 1.69752 1.36861 1.55964 0.98481 0.85551 0.82301 0.78147 0.76246 1.21810 1.22582 1.21155 1.21776 0.99744 0.96008 0.97801 1.21301 0.97012 0.97045 0.98967 1.21444 0.96456 0.97376 0.99127 1.21435 1.00300 0.95206 0.97976 1.21645 0.94996 0.97976 0.99850 1.20450 1.00540 0.90514 0.90671 1.20476 1.02806 1.02322 0.88588 0.88097 0.93311 0.92772 0.86304 0.87669 0.78303 0.84196 0.76111 0.91907 0.95433 0.78967 0.94494 0.94345 0.90931 0.92346 0.94070 0.90744 0.92100 0.90670 0.93804 0.90015 0.92430 0.90908 0.88829 0.90579 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.95 10.24 71.98 0.74 -1.22 16 2 C 0.09 1.04 6.45 86.38 0.56 1.60 16 3 N -0.44 -9.40 2.69 -509.90 -1.37 -10.77 16 4 C -0.01 -0.14 11.33 83.12 0.94 0.80 16 5 C -0.19 -5.73 10.56 23.62 0.25 -5.48 16 6 C -0.27 -9.50 6.29 -19.04 -0.12 -9.62 16 7 C 0.58 23.62 7.81 86.62 0.68 24.30 16 8 O -0.60 -27.10 14.81 -4.12 -0.06 -27.16 16 9 N -0.70 -27.51 5.09 -466.52 -2.37 -29.89 16 10 C 0.12 4.93 4.36 86.38 0.38 5.30 16 11 C 0.19 7.12 0.41 3.60 0.00 7.12 16 12 N -0.71 -32.59 3.40 -303.36 -1.03 -33.62 16 13 C -0.21 -10.96 8.70 84.03 0.73 -10.23 16 14 H 0.06 3.22 6.77 -2.91 -0.02 3.20 16 15 C -0.06 -3.53 5.50 84.86 0.47 -3.06 16 16 N -0.96 -56.66 13.07 21.65 0.28 -56.38 16 17 Si 0.95 47.41 29.55 68.60 2.03 49.44 16 18 H -0.29 -14.37 7.11 99.48 0.71 -13.67 16 19 H -0.30 -15.13 7.11 99.48 0.71 -14.43 16 20 H -0.29 -14.24 7.11 99.48 0.71 -13.53 16 21 C -0.11 -4.03 4.52 30.59 0.14 -3.89 16 22 C -0.11 -3.60 5.77 30.60 0.18 -3.43 16 23 C -0.11 -2.98 5.92 30.60 0.18 -2.80 16 24 C -0.11 -3.31 5.75 30.60 0.18 -3.13 16 25 C -0.11 -3.27 4.65 30.60 0.14 -3.13 16 26 C 0.10 2.76 6.89 41.78 0.29 3.05 16 27 C -0.08 -2.08 9.52 71.24 0.68 -1.40 16 28 H 0.10 0.63 8.14 -2.39 -0.02 0.61 16 29 H 0.05 0.73 8.14 -2.39 -0.02 0.71 16 30 H 0.05 0.76 8.14 -2.39 -0.02 0.74 16 31 H 0.12 0.78 8.11 -2.38 -0.02 0.76 16 32 H 0.11 0.90 7.05 -2.39 -0.02 0.89 16 33 H 0.20 2.99 8.06 -2.91 -0.02 2.96 16 34 H 0.14 4.27 7.70 -2.91 -0.02 4.24 16 35 H 0.40 15.74 6.51 -92.71 -0.60 15.14 16 36 H 0.06 2.32 8.14 -2.39 -0.02 2.30 16 37 H 0.03 1.26 7.51 -2.38 -0.02 1.24 16 38 H 0.38 18.61 6.64 -92.71 -0.62 18.00 16 39 H 0.25 14.39 8.31 -92.71 -0.77 13.62 16 40 H 0.04 1.53 7.23 -2.39 -0.02 1.52 16 41 H 0.07 2.17 8.14 -2.39 -0.02 2.15 16 42 H 0.06 1.79 8.14 -2.39 -0.02 1.77 16 43 H 0.04 1.75 7.61 -2.39 -0.02 1.73 16 44 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16 45 H 0.06 1.60 8.14 -2.39 -0.02 1.58 16 46 H 0.07 1.85 8.14 -2.39 -0.02 1.83 16 47 H 0.04 1.58 6.93 -2.39 -0.02 1.56 16 48 H 0.08 2.17 8.14 -2.39 -0.02 2.15 16 49 H 0.06 1.78 7.28 -2.39 -0.02 1.76 16 50 H 0.07 1.78 8.14 -2.39 -0.02 1.76 16 51 H 0.09 1.53 7.02 -2.39 -0.02 1.51 16 52 H 0.08 2.27 6.47 -2.39 -0.02 2.26 16 Total: -1.00 -71.05 403.34 3.57 -67.48 By element: Atomic # 1 Polarization: 46.43 SS G_CDS: -0.30 Total: 46.13 kcal Atomic # 6 Polarization: -11.62 SS G_CDS: 6.40 Total: -5.23 kcal Atomic # 7 Polarization: -126.17 SS G_CDS: -4.49 Total: -130.66 kcal Atomic # 8 Polarization: -27.10 SS G_CDS: -0.06 Total: -27.16 kcal Atomic # 14 Polarization: 47.41 SS G_CDS: 2.03 Total: 49.44 kcal Total: -71.05 3.57 -67.48 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001115686315.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.876 kcal (2) G-P(sol) polarization free energy of solvation -71.048 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.173 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.568 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.480 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.604 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds