Wall clock time and date at job start Tue Mar 31 2020 17:17:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08993 * 109.47562 * 2 1 4 4 C 1.52999 * 109.47013 * 120.00190 * 2 1 3 5 5 C 1.52999 * 109.47451 * 184.99869 * 4 2 1 6 6 H 1.09002 * 109.46716 * 304.99789 * 5 4 2 7 7 C 1.52997 * 109.47317 * 184.99880 * 5 4 2 8 8 N 1.46500 * 109.46944 * 64.99440 * 5 4 2 9 9 C 1.34780 * 119.99910 * 205.00356 * 8 5 4 10 10 O 1.21553 * 119.99779 * 0.02562 * 9 8 5 11 11 C 1.47843 * 120.00025 * 180.02562 * 9 8 5 12 12 C 1.39571 * 120.14157 * 359.71321 * 11 9 8 13 13 C 1.37964 * 119.85013 * 179.74885 * 12 11 9 14 14 C 1.38364 * 120.14292 * 0.53816 * 13 12 11 15 15 C 1.50700 * 119.85031 * 179.71989 * 14 13 12 16 16 N 1.46898 * 109.47045 * 270.01972 * 15 14 13 17 17 C 1.46904 * 110.99915 * 170.00450 * 16 15 14 18 18 C 1.46899 * 111.00152 * 293.95571 * 16 15 14 19 19 C 1.38353 * 120.29032 * 359.74105 * 14 13 12 20 20 C 1.37957 * 120.15208 * 359.97438 * 19 14 13 21 21 N 1.46502 * 109.46633 * 239.99464 * 2 1 3 22 22 C 1.36939 * 119.99677 * 85.00714 * 21 2 1 23 23 H 1.08002 * 120.00343 * 359.97438 * 22 21 2 24 24 C 1.38810 * 119.99791 * 179.97438 * 22 21 2 25 25 N 1.31622 * 119.99912 * 179.97438 * 24 22 21 26 26 Si 1.86796 * 120.00188 * 0.02562 * 24 22 21 27 27 H 1.48504 * 109.47264 * 89.99780 * 26 24 22 28 28 H 1.48499 * 109.47077 * 209.99530 * 26 24 22 29 29 H 1.48507 * 109.47186 * 329.99550 * 26 24 22 30 30 H 1.08993 * 109.47562 * 180.02562 * 1 2 3 31 31 H 1.09006 * 109.47127 * 300.00389 * 1 2 3 32 32 H 1.09002 * 109.46887 * 59.99800 * 1 2 3 33 33 H 1.08998 * 109.47348 * 64.98987 * 4 2 1 34 34 H 1.09000 * 109.46961 * 304.99502 * 4 2 1 35 35 H 1.09002 * 109.47153 * 299.99641 * 7 5 4 36 36 H 1.09001 * 109.46832 * 179.97438 * 7 5 4 37 37 H 1.09004 * 109.47261 * 59.99813 * 7 5 4 38 38 H 0.96994 * 119.99975 * 25.00733 * 8 5 4 39 39 H 1.07994 * 120.07971 * 0.02562 * 12 11 9 40 40 H 1.08000 * 119.92916 * 180.27798 * 13 12 11 41 41 H 1.09000 * 109.47645 * 30.02524 * 15 14 13 42 42 H 1.09006 * 109.46780 * 150.02573 * 15 14 13 43 43 H 1.09000 * 109.46896 * 59.99950 * 17 16 15 44 44 H 1.09001 * 109.46885 * 180.02562 * 17 16 15 45 45 H 1.09001 * 109.46670 * 299.99794 * 17 16 15 46 46 H 1.09005 * 109.46878 * 60.00028 * 18 16 15 47 47 H 1.09000 * 109.47075 * 180.02562 * 18 16 15 48 48 H 1.08998 * 109.47639 * 300.00211 * 18 16 15 49 49 H 1.08003 * 119.92382 * 179.97438 * 19 14 13 50 50 H 1.07993 * 120.07752 * 180.02562 * 20 19 14 51 51 H 0.96998 * 120.00280 * 265.00001 * 21 2 1 52 52 H 0.97000 * 120.00269 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5648 -0.6134 1.3137 6 1 3.9954 -0.9924 0.3869 7 6 4.0851 -1.4384 2.4925 8 7 3.9480 0.7893 1.4924 9 6 5.1613 1.2134 1.0867 10 8 5.9373 0.4321 0.5720 11 6 5.5482 2.6288 1.2675 12 6 4.6571 3.5296 1.8526 13 6 5.0263 4.8480 2.0232 14 6 6.2726 5.2800 1.6055 15 6 6.6667 6.7229 1.7893 16 7 6.2720 7.4933 0.6025 17 6 6.4220 8.9357 0.8372 18 6 7.0365 7.0699 -0.5783 19 6 7.1584 4.3933 1.0195 20 6 6.8039 3.0711 0.8484 21 7 2.0183 -0.6907 -1.1962 22 6 2.1491 -0.0076 -2.3758 23 1 1.8920 1.0402 -2.4244 24 6 2.6122 -0.6620 -3.5090 25 7 2.7375 -0.0055 -4.6429 26 14 3.0562 -2.4744 -3.4251 27 1 1.8590 -3.2927 -3.7450 28 1 4.1319 -2.7665 -4.4063 29 1 3.5308 -2.8051 -2.0573 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3634 0.5139 0.8900 32 1 -0.3633 0.5139 -0.8900 33 1 1.7515 -1.7715 1.2056 34 1 1.6054 -0.2617 2.1369 35 1 3.6545 -1.0594 3.4194 36 1 5.1714 -1.3619 2.5381 37 1 3.8000 -2.4821 2.3595 38 1 3.3285 1.4127 1.9028 39 1 3.6824 3.1946 2.1752 40 1 4.3395 5.5451 2.4799 41 1 6.1652 7.1275 2.6685 42 1 7.7464 6.7904 1.9237 43 1 7.4633 9.1597 1.0690 44 1 6.1226 9.4824 -0.0570 45 1 5.7910 9.2351 1.6741 46 1 6.8523 6.0129 -0.7705 47 1 6.7248 7.6565 -1.4425 48 1 8.1000 7.2263 -0.3979 49 1 8.1296 4.7371 0.6953 50 1 7.4964 2.3799 0.3912 51 1 2.2489 -1.6319 -1.1526 52 1 3.0607 -0.4628 -5.4349 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001135675832.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:17:56 Heat of formation + Delta-G solvation = -22.736384 kcal Electronic energy + Delta-G solvation = -29090.217183 eV Core-core repulsion = 25281.755193 eV Total energy + Delta-G solvation = -3808.461990 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 333.216 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.35359 -40.00622 -38.46602 -37.74273 -36.16507 -34.15593 -33.25113 -32.18328 -31.58634 -30.89061 -28.49418 -28.03348 -27.59652 -25.37194 -24.52925 -23.62443 -22.71139 -22.08602 -21.44669 -21.18633 -19.76658 -18.89641 -17.51459 -16.82521 -16.72919 -16.43758 -16.36996 -16.08778 -16.06754 -15.59961 -15.46415 -15.18435 -15.07608 -14.62332 -14.45355 -14.39975 -14.19476 -14.02257 -13.51753 -13.41909 -13.24163 -13.20991 -13.06536 -12.98674 -12.80979 -12.67670 -12.64355 -12.47412 -12.39135 -12.22738 -11.99541 -11.95322 -11.86439 -11.68377 -11.45221 -10.99567 -10.93466 -10.12730 -9.93873 -9.76576 -9.27825 -9.26638 -8.01455 -5.31412 -0.17014 0.41895 1.32410 1.37844 1.43110 1.85526 2.22612 2.47710 2.79683 3.24762 3.31439 3.63738 3.65602 3.79155 3.80682 3.93531 4.01215 4.08794 4.22363 4.29173 4.33869 4.41225 4.44814 4.51471 4.57090 4.62121 4.65764 4.73266 4.76595 4.77585 4.82161 4.86534 4.91015 5.00134 5.04039 5.05362 5.06328 5.08476 5.19216 5.29560 5.32303 5.38137 5.40328 5.54131 5.60046 5.61876 5.79986 5.90733 6.02428 6.09668 6.23534 6.59581 7.11293 7.28509 7.90154 8.05694 9.20890 Molecular weight = 333.22amu Principal moments of inertia in cm(-1) A = 0.011247 B = 0.003075 C = 0.002805 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2488.847214 B = 9102.332133 C = 9980.377828 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.166 3.834 3 H 0.041 0.959 4 C -0.121 4.121 5 C 0.140 3.860 6 H 0.047 0.953 7 C -0.151 4.151 8 N -0.699 5.699 9 C 0.549 3.451 10 O -0.589 6.589 11 C -0.151 4.151 12 C -0.081 4.081 13 C -0.105 4.105 14 C -0.056 4.056 15 C 0.093 3.907 16 N -0.559 5.559 17 C 0.025 3.975 18 C 0.018 3.982 19 C -0.121 4.121 20 C -0.082 4.082 21 N -0.749 5.749 22 C -0.212 4.212 23 H 0.053 0.947 24 C -0.069 4.069 25 N -0.987 5.987 26 Si 0.949 3.051 27 H -0.273 1.273 28 H -0.303 1.303 29 H -0.257 1.257 30 H 0.052 0.948 31 H 0.080 0.920 32 H 0.025 0.975 33 H 0.088 0.912 34 H 0.113 0.887 35 H 0.084 0.916 36 H 0.035 0.965 37 H 0.075 0.925 38 H 0.411 0.589 39 H 0.150 0.850 40 H 0.157 0.843 41 H 0.105 0.895 42 H 0.054 0.946 43 H 0.033 0.967 44 H 0.070 0.930 45 H 0.081 0.919 46 H 0.056 0.944 47 H 0.070 0.930 48 H 0.036 0.964 49 H 0.139 0.861 50 H 0.114 0.886 51 H 0.362 0.638 52 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.672 13.696 23.100 27.258 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.058 3.942 3 H 0.059 0.941 4 C -0.159 4.159 5 C 0.035 3.965 6 H 0.065 0.935 7 C -0.210 4.210 8 N -0.350 5.350 9 C 0.338 3.662 10 O -0.470 6.470 11 C -0.154 4.154 12 C -0.100 4.100 13 C -0.123 4.123 14 C -0.057 4.057 15 C -0.034 4.034 16 N -0.283 5.283 17 C -0.123 4.123 18 C -0.130 4.130 19 C -0.139 4.139 20 C -0.101 4.101 21 N -0.392 5.392 22 C -0.344 4.344 23 H 0.071 0.929 24 C -0.260 4.260 25 N -0.639 5.639 26 Si 0.777 3.223 27 H -0.199 1.199 28 H -0.231 1.231 29 H -0.182 1.182 30 H 0.071 0.929 31 H 0.099 0.901 32 H 0.044 0.956 33 H 0.106 0.894 34 H 0.131 0.869 35 H 0.103 0.897 36 H 0.054 0.946 37 H 0.094 0.906 38 H 0.249 0.751 39 H 0.168 0.832 40 H 0.175 0.825 41 H 0.123 0.877 42 H 0.072 0.928 43 H 0.051 0.949 44 H 0.089 0.911 45 H 0.099 0.901 46 H 0.075 0.925 47 H 0.088 0.912 48 H 0.055 0.945 49 H 0.156 0.844 50 H 0.132 0.868 51 H 0.194 0.806 52 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 4.676 13.228 22.541 26.551 hybrid contribution 1.196 -0.875 -1.001 1.788 sum 5.872 12.353 21.540 25.516 Atomic orbital electron populations 1.22279 0.97015 1.01461 1.00863 1.20522 0.92995 0.95326 0.85321 0.94096 1.22156 0.92371 1.02883 0.98497 1.20969 0.95963 0.80924 0.98627 0.93452 1.22094 1.00356 1.00389 0.98120 1.45766 1.15869 1.11728 1.61667 1.18751 0.82153 0.88234 0.77062 1.90732 1.53027 1.57704 1.45561 1.19990 0.97154 0.92808 1.05452 1.21536 0.98851 0.93386 0.96229 1.21262 0.96100 0.95147 0.99769 1.20180 0.94044 0.95639 0.95803 1.21163 0.99569 0.88724 0.93912 1.61965 1.56956 1.05388 1.03962 1.22440 1.00393 0.86388 1.03050 1.22468 0.95732 1.01488 0.93319 1.21142 1.00819 0.92026 0.99957 1.21254 0.95315 0.96609 0.96954 1.42828 1.79795 1.09421 1.07194 1.18962 1.33949 0.94121 0.87343 0.92917 1.25430 1.02904 1.02198 0.95463 1.69882 1.55434 1.37472 1.01117 0.85487 0.77581 0.81572 0.77645 1.19933 1.23084 1.18220 0.92917 0.90118 0.95603 0.89377 0.86871 0.89734 0.94558 0.90609 0.75098 0.83224 0.82533 0.87663 0.92831 0.94871 0.91115 0.90054 0.92483 0.91166 0.94533 0.84353 0.86784 0.80550 0.93727 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.84 9.49 71.98 0.68 -4.16 16 2 C 0.17 5.81 2.84 44.99 0.13 5.93 16 3 H 0.04 1.54 7.56 -2.39 -0.02 1.53 16 4 C -0.12 -3.06 4.29 30.59 0.13 -2.93 16 5 C 0.14 4.23 2.52 44.99 0.11 4.35 16 6 H 0.05 1.97 7.05 -2.39 -0.02 1.96 16 7 C -0.15 -3.67 9.48 71.98 0.68 -2.98 16 8 N -0.70 -20.18 4.40 -445.41 -1.96 -22.14 16 9 C 0.55 19.75 7.74 86.79 0.67 20.42 16 10 O -0.59 -26.99 16.01 -3.88 -0.06 -27.05 16 11 C -0.15 -4.48 5.87 -20.09 -0.12 -4.60 16 12 C -0.08 -1.77 9.54 22.53 0.21 -1.55 16 13 C -0.10 -1.91 9.68 22.23 0.22 -1.69 16 14 C -0.06 -1.06 4.89 -19.81 -0.10 -1.15 16 15 C 0.09 1.31 5.11 85.56 0.44 1.75 16 16 N -0.56 -9.21 5.01 -953.45 -4.78 -13.98 16 17 C 0.02 0.29 9.57 127.69 1.22 1.51 16 18 C 0.02 0.32 9.13 127.69 1.17 1.49 16 19 C -0.12 -2.70 7.94 22.23 0.18 -2.53 16 20 C -0.08 -2.40 9.60 22.53 0.22 -2.19 16 21 N -0.75 -35.14 4.30 -322.94 -1.39 -36.52 16 22 C -0.21 -12.52 10.41 84.03 0.87 -11.65 16 23 H 0.05 3.42 8.06 -2.91 -0.02 3.39 16 24 C -0.07 -4.30 5.50 84.86 0.47 -3.84 16 25 N -0.99 -66.64 13.97 21.65 0.30 -66.33 16 26 Si 0.95 48.85 27.74 68.60 1.90 50.76 16 27 H -0.27 -13.39 7.11 99.48 0.71 -12.69 16 28 H -0.30 -16.10 7.11 99.48 0.71 -15.40 16 29 H -0.26 -12.25 6.52 99.48 0.65 -11.61 16 30 H 0.05 1.56 8.14 -2.39 -0.02 1.54 16 31 H 0.08 1.82 8.14 -2.38 -0.02 1.80 16 32 H 0.02 0.94 8.14 -2.39 -0.02 0.92 16 33 H 0.09 2.09 8.14 -2.39 -0.02 2.07 16 34 H 0.11 1.90 8.14 -2.39 -0.02 1.88 16 35 H 0.08 1.51 8.14 -2.39 -0.02 1.49 16 36 H 0.04 1.03 8.14 -2.39 -0.02 1.01 16 37 H 0.08 1.64 8.14 -2.38 -0.02 1.62 16 38 H 0.41 8.70 6.64 -92.71 -0.62 8.08 16 39 H 0.15 2.36 6.41 -2.91 -0.02 2.34 16 40 H 0.16 1.95 8.06 -2.91 -0.02 1.92 16 41 H 0.11 1.07 8.00 -2.39 -0.02 1.05 16 42 H 0.05 0.67 8.06 -2.38 -0.02 0.65 16 43 H 0.03 0.33 8.14 -2.39 -0.02 0.31 16 44 H 0.07 0.81 8.12 -2.39 -0.02 0.79 16 45 H 0.08 0.74 8.12 -2.39 -0.02 0.72 16 46 H 0.06 1.24 6.16 -2.38 -0.01 1.22 16 47 H 0.07 1.21 8.12 -2.39 -0.02 1.19 16 48 H 0.04 0.55 8.14 -2.39 -0.02 0.53 16 49 H 0.14 2.54 8.03 -2.91 -0.02 2.52 16 50 H 0.11 3.69 7.65 -2.91 -0.02 3.67 16 51 H 0.36 16.65 5.66 -92.71 -0.52 16.12 16 52 H 0.25 16.44 8.31 -92.71 -0.77 15.67 16 Total: -1.00 -83.67 417.18 0.90 -82.77 By element: Atomic # 1 Polarization: 36.61 SS G_CDS: -0.30 Total: 36.31 kcal Atomic # 6 Polarization: -10.99 SS G_CDS: 7.18 Total: -3.81 kcal Atomic # 7 Polarization: -131.16 SS G_CDS: -7.82 Total: -138.98 kcal Atomic # 8 Polarization: -26.99 SS G_CDS: -0.06 Total: -27.05 kcal Atomic # 14 Polarization: 48.85 SS G_CDS: 1.90 Total: 50.76 kcal Total: -83.67 0.90 -82.77 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001135675832.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.031 kcal (2) G-P(sol) polarization free energy of solvation -83.672 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.641 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.905 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.767 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.736 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds