Wall clock time and date at job start Tue Mar 31 2020 17:18:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08999 * 109.47258 * 2 1 4 4 C 1.52996 * 109.47384 * 239.98985 * 2 1 3 5 5 C 1.52997 * 109.47124 * 174.70648 * 4 2 1 6 6 H 1.08998 * 109.46909 * 54.08861 * 5 4 2 7 7 C 1.52995 * 109.47534 * 294.08407 * 5 4 2 8 8 N 1.46504 * 109.47096 * 174.08327 * 5 4 2 9 9 C 1.36941 * 119.99998 * 208.10380 * 8 5 4 10 10 H 1.08001 * 119.99536 * 355.10551 * 9 8 5 11 11 C 1.38809 * 119.99910 * 175.11097 * 9 8 5 12 12 N 1.31619 * 119.99728 * 184.74751 * 11 9 8 13 13 Si 1.86797 * 120.00020 * 4.73962 * 11 9 8 14 14 H 1.48505 * 109.46954 * 85.04162 * 13 11 9 15 15 H 1.48498 * 109.47230 * 205.03633 * 13 11 9 16 16 H 1.48494 * 109.47604 * 325.04042 * 13 11 9 17 17 N 1.46508 * 109.46763 * 119.99336 * 2 1 3 18 18 C 1.34771 * 119.99926 * 278.01532 * 17 2 1 19 19 O 1.21561 * 120.00342 * 4.77518 * 18 17 2 20 20 C 1.47848 * 120.00225 * 184.77857 * 18 17 2 21 21 C 1.39581 * 120.14023 * 5.08520 * 20 18 17 22 22 C 1.37956 * 119.84965 * 179.74783 * 21 20 18 23 23 C 1.38358 * 120.14864 * 0.53396 * 22 21 20 24 24 C 1.50696 * 119.85859 * 179.72027 * 23 22 21 25 25 N 1.46898 * 109.47220 * 270.02485 * 24 23 22 26 26 C 1.46898 * 111.00079 * 169.99480 * 25 24 23 27 27 C 1.46895 * 110.99862 * 293.95349 * 25 24 23 28 28 C 1.38364 * 120.28649 * 359.74366 * 23 22 21 29 29 C 1.37950 * 120.14763 * 359.97438 * 28 23 22 30 30 H 1.09005 * 109.47392 * 300.00755 * 1 2 3 31 31 H 1.09003 * 109.46493 * 60.00453 * 1 2 3 32 32 H 1.08994 * 109.47532 * 180.02562 * 1 2 3 33 33 H 1.09004 * 109.47017 * 54.71097 * 4 2 1 34 34 H 1.08999 * 109.47073 * 294.71456 * 4 2 1 35 35 H 1.09001 * 109.47113 * 299.99709 * 7 5 4 36 36 H 1.08997 * 109.47008 * 59.99945 * 7 5 4 37 37 H 1.09000 * 109.47475 * 179.97438 * 7 5 4 38 38 H 0.97003 * 119.99881 * 28.37370 * 8 5 4 39 39 H 0.97004 * 119.99590 * 180.02562 * 12 11 9 40 40 H 0.96996 * 119.99841 * 98.01684 * 17 2 1 41 41 H 1.07999 * 120.07373 * 0.02562 * 21 20 18 42 42 H 1.08002 * 119.92874 * 180.28281 * 22 21 20 43 43 H 1.09003 * 109.46854 * 30.02251 * 24 23 22 44 44 H 1.08997 * 109.47356 * 150.02134 * 24 23 22 45 45 H 1.08998 * 109.47042 * 60.00329 * 26 25 24 46 46 H 1.09007 * 109.47122 * 179.97438 * 26 25 24 47 47 H 1.08993 * 109.47648 * 300.00196 * 26 25 24 48 48 H 1.08999 * 109.47647 * 59.99806 * 27 25 24 49 49 H 1.09008 * 109.47400 * 180.02562 * 27 25 24 50 50 H 1.09000 * 109.46894 * 299.99577 * 27 25 24 51 51 H 1.08003 * 119.92284 * 179.97438 * 28 23 22 52 52 H 1.08009 * 120.07232 * 179.97438 * 29 28 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0401 -0.7214 -1.2491 5 6 3.5642 -0.6072 -1.3173 6 1 3.9977 -0.9675 -0.3844 7 6 3.9570 0.8560 -1.5306 8 7 4.0650 -1.4147 -2.4324 9 6 5.3262 -1.9457 -2.3811 10 1 5.9803 -1.7047 -1.5562 11 6 5.7639 -2.7934 -3.3893 12 7 6.9396 -3.3775 -3.2938 13 14 4.6844 -3.1055 -4.8815 14 1 4.9043 -2.0327 -5.8845 15 1 5.0327 -4.4199 -5.4783 16 1 3.2582 -3.1118 -4.4682 17 7 2.0183 -0.6905 1.1963 18 6 2.0894 -0.0342 2.3713 19 8 1.6679 1.1026 2.4591 20 6 2.6801 -0.6969 3.5536 21 6 3.2607 -1.9604 3.4319 22 6 3.8148 -2.5709 4.5379 23 6 3.7861 -1.9384 5.7682 24 6 4.3877 -2.6141 6.9733 25 7 3.3629 -3.4274 7.6412 26 6 3.9610 -4.2836 8.6742 27 6 2.3049 -2.5801 8.2074 28 6 3.2070 -0.6884 5.8968 29 6 2.6546 -0.0643 4.7975 30 1 -0.3634 0.5140 0.8899 31 1 -0.3632 0.5138 -0.8901 32 1 -0.3634 -1.0276 0.0005 33 1 1.6014 -0.2654 -2.1366 34 1 1.7561 -1.7728 -1.2028 35 1 3.5236 1.2163 -2.4635 36 1 3.5845 1.4568 -0.7010 37 1 5.0429 0.9375 -1.5788 38 1 3.5046 -1.5700 -3.2088 39 1 7.2456 -3.9697 -3.9986 40 1 2.2904 -1.6200 1.1427 41 1 3.2800 -2.4570 2.4730 42 1 4.2684 -3.5466 4.4442 43 1 5.2111 -3.2547 6.6574 44 1 4.7600 -1.8587 7.6653 45 1 4.4547 -3.6615 9.4207 46 1 3.1803 -4.8746 9.1531 47 1 4.6918 -4.9498 8.2157 48 1 1.8317 -2.0078 7.4096 49 1 1.5595 -3.2075 8.6964 50 1 2.7386 -1.8962 8.9371 51 1 3.1875 -0.2002 6.8600 52 1 2.2025 0.9113 4.8994 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001135675834.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:18:05 Heat of formation + Delta-G solvation = 0.167283 kcal Electronic energy + Delta-G solvation = -28586.792920 eV Core-core repulsion = 24779.324107 eV Total energy + Delta-G solvation = -3807.468813 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 333.216 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -40.39635 -39.14193 -37.36341 -36.82003 -34.75871 -32.65714 -31.94895 -31.26667 -30.51050 -29.08054 -27.94484 -27.33905 -26.37721 -23.94138 -23.37863 -22.78953 -21.86087 -21.06429 -20.30700 -19.80384 -18.12720 -17.43624 -16.49544 -16.03143 -15.84830 -15.68471 -15.16084 -14.90311 -14.74137 -14.60221 -14.35110 -14.25797 -13.67731 -13.65299 -13.36512 -13.22325 -12.81031 -12.73483 -12.57209 -12.51711 -12.34484 -12.16264 -12.09635 -11.98167 -11.89574 -11.71690 -11.51307 -11.30347 -11.14788 -11.01094 -10.66809 -10.53593 -10.21878 -10.00254 -9.84848 -9.62556 -9.15317 -9.08715 -8.91648 -8.89006 -8.67937 -7.28542 -5.78224 -3.13656 0.69877 1.24440 2.80020 3.22114 3.35917 3.39936 3.44466 3.57756 3.91261 4.39991 4.55174 4.58108 4.68712 4.78442 4.82464 4.88372 4.93120 4.98181 5.11252 5.17761 5.20210 5.22175 5.31585 5.33698 5.45095 5.48748 5.49341 5.58055 5.59291 5.64530 5.66564 5.75042 5.85050 5.86926 5.97941 6.10613 6.14534 6.20665 6.23551 6.26983 6.33541 6.42396 6.50518 6.56770 6.61820 6.62801 6.73948 6.82658 7.01273 7.58601 7.99562 8.26686 8.41171 9.19991 9.92661 10.12999 11.40002 Molecular weight = 333.22amu Principal moments of inertia in cm(-1) A = 0.011575 B = 0.002654 C = 0.002285 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2418.428297 B =10547.508743 C =12249.089087 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.145 3.855 3 H 0.091 0.909 4 C -0.138 4.138 5 C 0.178 3.822 6 H 0.057 0.943 7 C -0.168 4.168 8 N -0.749 5.749 9 C -0.242 4.242 10 H 0.089 0.911 11 C 0.004 3.996 12 N -0.934 5.934 13 Si 0.884 3.116 14 H -0.284 1.284 15 H -0.292 1.292 16 H -0.277 1.277 17 N -0.714 5.714 18 C 0.559 3.441 19 O -0.543 6.543 20 C -0.131 4.131 21 C -0.081 4.081 22 C -0.103 4.103 23 C -0.058 4.058 24 C 0.089 3.911 25 N -0.542 5.542 26 C 0.024 3.976 27 C 0.019 3.981 28 C -0.125 4.125 29 C -0.062 4.062 30 H 0.060 0.940 31 H 0.064 0.936 32 H 0.055 0.945 33 H 0.075 0.925 34 H 0.070 0.930 35 H 0.045 0.955 36 H 0.041 0.959 37 H 0.055 0.945 38 H 0.359 0.641 39 H 0.259 0.741 40 H 0.402 0.598 41 H 0.131 0.869 42 H 0.130 0.870 43 H 0.087 0.913 44 H 0.045 0.955 45 H 0.025 0.975 46 H 0.069 0.931 47 H 0.070 0.930 48 H 0.074 0.926 49 H 0.067 0.933 50 H 0.025 0.975 51 H 0.123 0.877 52 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.075 2.206 22.217 24.922 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.041 3.959 3 H 0.109 0.891 4 C -0.177 4.177 5 C 0.068 3.932 6 H 0.075 0.925 7 C -0.228 4.228 8 N -0.391 5.391 9 C -0.372 4.372 10 H 0.107 0.893 11 C -0.192 4.192 12 N -0.581 5.581 13 Si 0.714 3.286 14 H -0.211 1.211 15 H -0.219 1.219 16 H -0.204 1.204 17 N -0.366 5.366 18 C 0.347 3.653 19 O -0.422 6.422 20 C -0.135 4.135 21 C -0.100 4.100 22 C -0.122 4.122 23 C -0.059 4.059 24 C -0.038 4.038 25 N -0.265 5.265 26 C -0.124 4.124 27 C -0.130 4.130 28 C -0.144 4.144 29 C -0.081 4.081 30 H 0.079 0.921 31 H 0.083 0.917 32 H 0.074 0.926 33 H 0.094 0.906 34 H 0.089 0.911 35 H 0.064 0.936 36 H 0.060 0.940 37 H 0.074 0.926 38 H 0.192 0.808 39 H 0.069 0.931 40 H 0.238 0.762 41 H 0.149 0.851 42 H 0.148 0.852 43 H 0.106 0.894 44 H 0.064 0.936 45 H 0.044 0.956 46 H 0.088 0.912 47 H 0.089 0.911 48 H 0.093 0.907 49 H 0.086 0.914 50 H 0.044 0.956 51 H 0.141 0.859 52 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -11.336 2.611 21.979 24.868 hybrid contribution -0.070 -0.230 -0.668 0.710 sum -11.406 2.382 21.311 24.289 Atomic orbital electron populations 1.22174 0.95537 1.01995 1.02359 1.21055 0.93590 0.97691 0.83602 0.89116 1.22281 0.98118 1.00904 0.96418 1.20173 0.90285 0.90533 0.92172 0.92463 1.22476 1.02002 0.98492 0.99845 1.42762 1.15994 1.61889 1.18500 1.19057 0.89378 1.21031 1.07744 0.89327 1.24676 0.96780 0.98900 0.98796 1.69712 1.19784 1.34192 1.34454 0.86588 0.80333 0.77445 0.84219 1.21110 1.21851 1.20356 1.46060 1.66140 1.15773 1.08615 1.18262 0.78329 0.85744 0.82979 1.90744 1.48413 1.18328 1.84693 1.20000 1.03219 0.95921 0.94315 1.21414 0.95685 0.93677 0.99242 1.20973 0.99548 1.00015 0.91663 1.19880 0.97282 0.94037 0.94663 1.21134 0.93670 0.95747 0.93230 1.61977 1.12243 1.22711 1.29596 1.22405 0.99754 0.96850 0.93417 1.22500 0.94826 0.96561 0.99074 1.20982 0.99605 0.95173 0.98602 1.21191 0.96410 0.99528 0.90950 0.92114 0.91709 0.92594 0.90620 0.91098 0.93593 0.93977 0.92569 0.80837 0.93085 0.76213 0.85143 0.85164 0.89441 0.93648 0.95619 0.91183 0.91090 0.90688 0.91387 0.95629 0.85891 0.84801 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.91 9.42 37.16 0.35 -1.56 16 2 C 0.15 1.93 2.39 -67.93 -0.16 1.76 16 3 H 0.09 1.33 5.97 -51.93 -0.31 1.02 16 4 C -0.14 -2.01 4.40 -26.73 -0.12 -2.12 16 5 C 0.18 3.26 2.92 -67.93 -0.20 3.06 16 6 H 0.06 1.09 7.50 -51.93 -0.39 0.71 16 7 C -0.17 -2.97 9.29 37.16 0.35 -2.62 16 8 N -0.75 -17.11 4.89 -53.43 -0.26 -17.37 16 9 C -0.24 -6.67 10.41 -15.06 -0.16 -6.83 16 10 H 0.09 2.63 8.06 -52.49 -0.42 2.21 16 11 C 0.00 0.12 5.50 -17.43 -0.10 0.03 16 12 N -0.93 -29.00 13.97 55.49 0.78 -28.22 16 13 Si 0.88 21.82 27.66 -169.99 -4.70 17.12 16 14 H -0.28 -7.02 7.11 56.52 0.40 -6.62 16 15 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 16 H -0.28 -6.40 6.64 56.52 0.38 -6.03 16 17 N -0.71 -9.29 4.42 -54.75 -0.24 -9.53 16 18 C 0.56 8.00 7.68 -12.33 -0.09 7.91 16 19 O -0.54 -9.26 15.76 5.31 0.08 -9.18 16 20 C -0.13 -1.64 5.87 -104.97 -0.62 -2.26 16 21 C -0.08 -0.91 9.52 -39.18 -0.37 -1.29 16 22 C -0.10 -1.06 9.68 -39.64 -0.38 -1.45 16 23 C -0.06 -0.55 4.89 -104.53 -0.51 -1.06 16 24 C 0.09 0.71 5.11 -4.98 -0.03 0.68 16 25 N -0.54 -4.35 5.01 -252.73 -1.27 -5.61 16 26 C 0.02 0.15 9.57 60.06 0.57 0.72 16 27 C 0.02 0.13 9.13 60.06 0.55 0.68 16 28 C -0.13 -1.19 7.94 -39.64 -0.31 -1.50 16 29 C -0.06 -0.70 9.59 -39.19 -0.38 -1.08 16 30 H 0.06 0.78 7.79 -51.93 -0.40 0.37 16 31 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 32 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 34 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 35 H 0.04 0.78 8.14 -51.93 -0.42 0.35 16 36 H 0.04 0.67 6.49 -51.93 -0.34 0.33 16 37 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 38 H 0.36 8.08 5.78 -40.82 -0.24 7.84 16 39 H 0.26 7.69 8.31 -40.82 -0.34 7.35 16 40 H 0.40 4.72 6.65 -40.82 -0.27 4.45 16 41 H 0.13 1.34 6.47 -52.49 -0.34 1.00 16 42 H 0.13 1.18 8.06 -52.49 -0.42 0.75 16 43 H 0.09 0.64 8.00 -51.93 -0.42 0.22 16 44 H 0.05 0.33 8.06 -51.93 -0.42 -0.09 16 45 H 0.03 0.14 8.14 -51.93 -0.42 -0.28 16 46 H 0.07 0.39 8.12 -51.93 -0.42 -0.03 16 47 H 0.07 0.41 8.12 -51.93 -0.42 -0.01 16 48 H 0.07 0.59 6.16 -51.93 -0.32 0.27 16 49 H 0.07 0.44 8.12 -51.92 -0.42 0.01 16 50 H 0.03 0.16 8.14 -51.93 -0.42 -0.26 16 51 H 0.12 0.92 8.03 -52.48 -0.42 0.50 16 52 H 0.13 1.50 7.66 -52.48 -0.40 1.10 16 LS Contribution 414.39 15.07 6.24 6.24 Total: -1.00 -33.01 414.39 -9.90 -42.90 By element: Atomic # 1 Polarization: 19.49 SS G_CDS: -8.92 Total: 10.57 kcal Atomic # 6 Polarization: -5.32 SS G_CDS: -1.61 Total: -6.93 kcal Atomic # 7 Polarization: -59.74 SS G_CDS: -0.99 Total: -60.74 kcal Atomic # 8 Polarization: -9.26 SS G_CDS: 0.08 Total: -9.18 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -4.70 Total: 17.12 kcal Total LS contribution 6.24 Total: 6.24 kcal Total: -33.01 -9.90 -42.90 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001135675834.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.072 kcal (2) G-P(sol) polarization free energy of solvation -33.008 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.064 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.897 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.904 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.167 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds