Wall clock time and date at job start Tue Mar 31 2020 17:18:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08999 * 109.47258 * 2 1 4 4 C 1.52996 * 109.47384 * 239.98985 * 2 1 3 5 5 C 1.52997 * 109.47124 * 174.70648 * 4 2 1 6 6 H 1.08998 * 109.46909 * 54.08861 * 5 4 2 7 7 C 1.52995 * 109.47534 * 294.08407 * 5 4 2 8 8 N 1.46504 * 109.47096 * 174.08327 * 5 4 2 9 9 C 1.36941 * 119.99998 * 208.10380 * 8 5 4 10 10 H 1.08001 * 119.99536 * 355.10551 * 9 8 5 11 11 C 1.38809 * 119.99910 * 175.11097 * 9 8 5 12 12 N 1.31619 * 119.99728 * 184.74751 * 11 9 8 13 13 Si 1.86797 * 120.00020 * 4.73962 * 11 9 8 14 14 H 1.48505 * 109.46954 * 85.04162 * 13 11 9 15 15 H 1.48498 * 109.47230 * 205.03633 * 13 11 9 16 16 H 1.48494 * 109.47604 * 325.04042 * 13 11 9 17 17 N 1.46508 * 109.46763 * 119.99336 * 2 1 3 18 18 C 1.34771 * 119.99926 * 278.01532 * 17 2 1 19 19 O 1.21561 * 120.00342 * 4.77518 * 18 17 2 20 20 C 1.47848 * 120.00225 * 184.77857 * 18 17 2 21 21 C 1.39581 * 120.14023 * 5.08520 * 20 18 17 22 22 C 1.37956 * 119.84965 * 179.74783 * 21 20 18 23 23 C 1.38358 * 120.14864 * 0.53396 * 22 21 20 24 24 C 1.50696 * 119.85859 * 179.72027 * 23 22 21 25 25 N 1.46898 * 109.47220 * 270.02485 * 24 23 22 26 26 C 1.46898 * 111.00079 * 169.99480 * 25 24 23 27 27 C 1.46895 * 110.99862 * 293.95349 * 25 24 23 28 28 C 1.38364 * 120.28649 * 359.74366 * 23 22 21 29 29 C 1.37950 * 120.14763 * 359.97438 * 28 23 22 30 30 H 1.09005 * 109.47392 * 300.00755 * 1 2 3 31 31 H 1.09003 * 109.46493 * 60.00453 * 1 2 3 32 32 H 1.08994 * 109.47532 * 180.02562 * 1 2 3 33 33 H 1.09004 * 109.47017 * 54.71097 * 4 2 1 34 34 H 1.08999 * 109.47073 * 294.71456 * 4 2 1 35 35 H 1.09001 * 109.47113 * 299.99709 * 7 5 4 36 36 H 1.08997 * 109.47008 * 59.99945 * 7 5 4 37 37 H 1.09000 * 109.47475 * 179.97438 * 7 5 4 38 38 H 0.97003 * 119.99881 * 28.37370 * 8 5 4 39 39 H 0.97004 * 119.99590 * 180.02562 * 12 11 9 40 40 H 0.96996 * 119.99841 * 98.01684 * 17 2 1 41 41 H 1.07999 * 120.07373 * 0.02562 * 21 20 18 42 42 H 1.08002 * 119.92874 * 180.28281 * 22 21 20 43 43 H 1.09003 * 109.46854 * 30.02251 * 24 23 22 44 44 H 1.08997 * 109.47356 * 150.02134 * 24 23 22 45 45 H 1.08998 * 109.47042 * 60.00329 * 26 25 24 46 46 H 1.09007 * 109.47122 * 179.97438 * 26 25 24 47 47 H 1.08993 * 109.47648 * 300.00196 * 26 25 24 48 48 H 1.08999 * 109.47647 * 59.99806 * 27 25 24 49 49 H 1.09008 * 109.47400 * 180.02562 * 27 25 24 50 50 H 1.09000 * 109.46894 * 299.99577 * 27 25 24 51 51 H 1.08003 * 119.92284 * 179.97438 * 28 23 22 52 52 H 1.08009 * 120.07232 * 179.97438 * 29 28 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0401 -0.7214 -1.2491 5 6 3.5642 -0.6072 -1.3173 6 1 3.9977 -0.9675 -0.3844 7 6 3.9570 0.8560 -1.5306 8 7 4.0650 -1.4147 -2.4324 9 6 5.3262 -1.9457 -2.3811 10 1 5.9803 -1.7047 -1.5562 11 6 5.7639 -2.7934 -3.3893 12 7 6.9396 -3.3775 -3.2938 13 14 4.6844 -3.1055 -4.8815 14 1 4.9043 -2.0327 -5.8845 15 1 5.0327 -4.4199 -5.4783 16 1 3.2582 -3.1118 -4.4682 17 7 2.0183 -0.6905 1.1963 18 6 2.0894 -0.0342 2.3713 19 8 1.6679 1.1026 2.4591 20 6 2.6801 -0.6969 3.5536 21 6 3.2607 -1.9604 3.4319 22 6 3.8148 -2.5709 4.5379 23 6 3.7861 -1.9384 5.7682 24 6 4.3877 -2.6141 6.9733 25 7 3.3629 -3.4274 7.6412 26 6 3.9610 -4.2836 8.6742 27 6 2.3049 -2.5801 8.2074 28 6 3.2070 -0.6884 5.8968 29 6 2.6546 -0.0643 4.7975 30 1 -0.3634 0.5140 0.8899 31 1 -0.3632 0.5138 -0.8901 32 1 -0.3634 -1.0276 0.0005 33 1 1.6014 -0.2654 -2.1366 34 1 1.7561 -1.7728 -1.2028 35 1 3.5236 1.2163 -2.4635 36 1 3.5845 1.4568 -0.7010 37 1 5.0429 0.9375 -1.5788 38 1 3.5046 -1.5700 -3.2088 39 1 7.2456 -3.9697 -3.9986 40 1 2.2904 -1.6200 1.1427 41 1 3.2800 -2.4570 2.4730 42 1 4.2684 -3.5466 4.4442 43 1 5.2111 -3.2547 6.6574 44 1 4.7600 -1.8587 7.6653 45 1 4.4547 -3.6615 9.4207 46 1 3.1803 -4.8746 9.1531 47 1 4.6918 -4.9498 8.2157 48 1 1.8317 -2.0078 7.4096 49 1 1.5595 -3.2075 8.6964 50 1 2.7386 -1.8962 8.9371 51 1 3.1875 -0.2002 6.8600 52 1 2.2025 0.9113 4.8994 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001135675834.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:18:04 Heat of formation + Delta-G solvation = -21.412584 kcal Electronic energy + Delta-G solvation = -28587.728693 eV Core-core repulsion = 24779.324107 eV Total energy + Delta-G solvation = -3808.404586 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 333.216 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -41.38819 -40.03741 -38.48834 -37.74690 -36.27136 -34.15872 -33.25982 -32.21236 -31.64729 -30.66885 -28.47706 -28.04317 -27.64514 -25.55390 -24.49279 -23.63471 -22.75358 -22.16217 -21.44077 -21.11988 -19.72326 -18.85415 -17.50997 -16.84484 -16.67989 -16.44761 -16.41010 -16.15994 -15.89573 -15.77556 -15.47085 -15.18789 -15.10412 -14.63951 -14.49428 -14.40153 -14.23498 -13.92993 -13.55543 -13.48232 -13.25137 -13.21877 -13.07591 -12.97260 -12.83793 -12.72900 -12.67206 -12.47369 -12.33541 -12.22259 -12.02431 -11.94704 -11.81895 -11.64873 -11.48823 -10.99056 -10.92502 -10.15926 -9.94823 -9.78909 -9.30361 -9.27842 -7.99376 -5.32624 -0.18817 0.41325 1.40447 1.44261 1.51214 1.81633 2.18649 2.51487 2.77960 3.23381 3.30234 3.44837 3.64518 3.78774 3.87785 3.98287 4.01261 4.12804 4.18961 4.22866 4.30404 4.40662 4.44250 4.46526 4.57103 4.58161 4.62004 4.63821 4.74182 4.77682 4.80449 4.86847 4.91899 4.94628 5.04264 5.04722 5.05233 5.05811 5.09510 5.29662 5.32752 5.35940 5.38126 5.47152 5.54930 5.60931 5.81424 5.89306 6.03044 6.08757 6.24718 6.52520 7.11663 7.18332 7.87769 8.07921 9.22053 Molecular weight = 333.22amu Principal moments of inertia in cm(-1) A = 0.011575 B = 0.002654 C = 0.002285 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2418.428297 B =10547.508743 C =12249.089087 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.148 3.852 3 H 0.078 0.922 4 C -0.124 4.124 5 C 0.172 3.828 6 H 0.044 0.956 7 C -0.161 4.161 8 N -0.749 5.749 9 C -0.226 4.226 10 H 0.052 0.948 11 C -0.065 4.065 12 N -0.985 5.985 13 Si 0.954 3.046 14 H -0.282 1.282 15 H -0.300 1.300 16 H -0.246 1.246 17 N -0.710 5.710 18 C 0.557 3.443 19 O -0.577 6.577 20 C -0.151 4.151 21 C -0.087 4.087 22 C -0.111 4.111 23 C -0.054 4.054 24 C 0.091 3.909 25 N -0.557 5.557 26 C 0.024 3.976 27 C 0.019 3.981 28 C -0.119 4.119 29 C -0.071 4.071 30 H 0.047 0.953 31 H 0.081 0.919 32 H 0.066 0.934 33 H 0.093 0.907 34 H 0.077 0.923 35 H 0.057 0.943 36 H 0.059 0.941 37 H 0.027 0.973 38 H 0.365 0.635 39 H 0.256 0.744 40 H 0.408 0.592 41 H 0.135 0.865 42 H 0.142 0.858 43 H 0.093 0.907 44 H 0.056 0.944 45 H 0.032 0.968 46 H 0.075 0.925 47 H 0.073 0.927 48 H 0.064 0.936 49 H 0.073 0.927 50 H 0.034 0.966 51 H 0.145 0.855 52 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.026 1.964 22.631 26.185 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.044 3.956 3 H 0.096 0.904 4 C -0.163 4.163 5 C 0.064 3.936 6 H 0.063 0.937 7 C -0.220 4.220 8 N -0.393 5.393 9 C -0.357 4.357 10 H 0.070 0.930 11 C -0.256 4.256 12 N -0.636 5.636 13 Si 0.782 3.218 14 H -0.208 1.208 15 H -0.227 1.227 16 H -0.170 1.170 17 N -0.361 5.361 18 C 0.346 3.654 19 O -0.458 6.458 20 C -0.154 4.154 21 C -0.105 4.105 22 C -0.130 4.130 23 C -0.054 4.054 24 C -0.036 4.036 25 N -0.281 5.281 26 C -0.124 4.124 27 C -0.129 4.129 28 C -0.138 4.138 29 C -0.090 4.090 30 H 0.066 0.934 31 H 0.100 0.900 32 H 0.085 0.915 33 H 0.111 0.889 34 H 0.096 0.904 35 H 0.076 0.924 36 H 0.078 0.922 37 H 0.047 0.953 38 H 0.199 0.801 39 H 0.065 0.935 40 H 0.245 0.755 41 H 0.153 0.847 42 H 0.160 0.840 43 H 0.111 0.889 44 H 0.074 0.926 45 H 0.051 0.949 46 H 0.094 0.906 47 H 0.092 0.908 48 H 0.083 0.917 49 H 0.092 0.908 50 H 0.053 0.947 51 H 0.163 0.837 52 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -13.333 2.386 22.415 26.190 hybrid contribution 0.598 -0.120 -0.645 0.887 sum -12.736 2.266 21.770 25.324 Atomic orbital electron populations 1.22098 0.93838 1.02765 1.02578 1.21003 0.94811 0.96729 0.83062 0.90447 1.22123 0.94671 1.01764 0.97692 1.20365 0.93016 0.90020 0.90151 0.93750 1.22357 1.00205 0.98253 1.01204 1.42737 1.14373 1.62140 1.20008 1.18971 0.90660 1.19962 1.06088 0.92971 1.25503 0.98420 0.99391 1.02333 1.69900 1.22264 1.35744 1.35682 0.85440 0.79951 0.76657 0.79787 1.20791 1.22664 1.17047 1.46058 1.65703 1.16004 1.08372 1.18555 0.77819 0.85378 0.83635 1.90715 1.50094 1.19719 1.85282 1.19969 1.04635 0.96694 0.94113 1.21494 0.95788 0.93356 0.99909 1.21187 0.99463 1.00573 0.91732 1.20138 0.96303 0.93898 0.95095 1.21144 0.93702 0.96095 0.92687 1.61966 1.12553 1.23062 1.30552 1.22434 1.00017 0.96743 0.93168 1.22495 0.94817 0.96707 0.98902 1.21188 0.98574 0.95096 0.98900 1.21285 0.96880 0.99600 0.91249 0.93372 0.90021 0.91523 0.88881 0.90400 0.92437 0.92249 0.95347 0.80147 0.93479 0.75505 0.84740 0.84019 0.88859 0.92634 0.94937 0.90633 0.90805 0.91709 0.90817 0.94714 0.83701 0.85182 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.29 9.42 71.98 0.68 -2.61 16 2 C 0.15 3.71 2.39 44.99 0.11 3.82 16 3 H 0.08 2.18 5.97 -2.39 -0.01 2.17 16 4 C -0.12 -3.28 4.40 30.59 0.13 -3.15 16 5 C 0.17 6.14 2.92 44.99 0.13 6.27 16 6 H 0.04 1.70 7.50 -2.39 -0.02 1.68 16 7 C -0.16 -5.53 9.29 71.98 0.67 -4.86 16 8 N -0.75 -33.30 4.89 -322.95 -1.58 -34.88 16 9 C -0.23 -12.57 10.41 84.03 0.87 -11.70 16 10 H 0.05 3.23 8.06 -2.91 -0.02 3.21 16 11 C -0.07 -3.79 5.50 84.86 0.47 -3.32 16 12 N -0.99 -62.70 13.97 21.65 0.30 -62.40 16 13 Si 0.95 44.54 27.66 68.60 1.90 46.44 16 14 H -0.28 -12.95 7.11 99.48 0.71 -12.24 16 15 H -0.30 -14.31 7.11 99.48 0.71 -13.60 16 16 H -0.25 -10.12 6.64 99.48 0.66 -9.46 16 17 N -0.71 -18.07 4.42 -445.39 -1.97 -20.04 16 18 C 0.56 16.06 7.68 86.79 0.67 16.72 16 19 O -0.58 -19.94 15.76 -3.91 -0.06 -20.00 16 20 C -0.15 -3.80 5.87 -20.09 -0.12 -3.91 16 21 C -0.09 -1.93 9.52 22.53 0.21 -1.72 16 22 C -0.11 -2.20 9.68 22.23 0.22 -1.98 16 23 C -0.05 -0.95 4.89 -19.81 -0.10 -1.05 16 24 C 0.09 1.27 5.11 85.56 0.44 1.71 16 25 N -0.56 -7.94 5.01 -953.50 -4.78 -12.71 16 26 C 0.02 0.25 9.57 127.69 1.22 1.47 16 27 C 0.02 0.24 9.13 127.69 1.17 1.40 16 28 C -0.12 -2.14 7.94 22.23 0.18 -1.96 16 29 C -0.07 -1.61 9.59 22.52 0.22 -1.40 16 30 H 0.05 1.17 7.79 -2.38 -0.02 1.15 16 31 H 0.08 1.47 8.14 -2.39 -0.02 1.45 16 32 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 33 H 0.09 2.21 8.14 -2.38 -0.02 2.19 16 34 H 0.08 2.00 8.14 -2.39 -0.02 1.98 16 35 H 0.06 1.83 8.14 -2.39 -0.02 1.81 16 36 H 0.06 1.83 6.49 -2.39 -0.02 1.82 16 37 H 0.03 1.10 8.14 -2.39 -0.02 1.08 16 38 H 0.37 15.41 5.78 -92.71 -0.54 14.87 16 39 H 0.26 15.59 8.31 -92.71 -0.77 14.82 16 40 H 0.41 9.33 6.65 -92.71 -0.62 8.72 16 41 H 0.13 2.76 6.47 -2.91 -0.02 2.74 16 42 H 0.14 2.41 8.06 -2.91 -0.02 2.39 16 43 H 0.09 1.19 8.00 -2.39 -0.02 1.18 16 44 H 0.06 0.67 8.06 -2.39 -0.02 0.65 16 45 H 0.03 0.30 8.14 -2.39 -0.02 0.28 16 46 H 0.07 0.70 8.12 -2.38 -0.02 0.68 16 47 H 0.07 0.72 8.12 -2.39 -0.02 0.70 16 48 H 0.06 0.94 6.16 -2.39 -0.01 0.93 16 49 H 0.07 0.83 8.12 -2.38 -0.02 0.81 16 50 H 0.03 0.37 8.14 -2.39 -0.02 0.35 16 51 H 0.15 1.90 8.03 -2.91 -0.02 1.88 16 52 H 0.13 2.98 7.66 -2.91 -0.02 2.96 16 Total: -1.00 -72.11 414.39 0.68 -71.43 By element: Atomic # 1 Polarization: 38.74 SS G_CDS: -0.29 Total: 38.45 kcal Atomic # 6 Polarization: -13.43 SS G_CDS: 7.16 Total: -6.27 kcal Atomic # 7 Polarization: -122.01 SS G_CDS: -8.02 Total: -130.04 kcal Atomic # 8 Polarization: -19.94 SS G_CDS: -0.06 Total: -20.00 kcal Atomic # 14 Polarization: 44.54 SS G_CDS: 1.90 Total: 46.44 kcal Total: -72.11 0.68 -71.43 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001135675834.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.013 kcal (2) G-P(sol) polarization free energy of solvation -72.107 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.094 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.681 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.426 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.413 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds