Wall clock time and date at job start Tue Mar 31 2020 18:24:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 N 1.46897 * 109.46684 * 2 1 4 4 C 1.46900 * 111.00391 * 299.40180 * 3 2 1 5 5 C 1.50705 * 109.47004 * 293.93884 * 4 3 2 6 6 H 1.08003 * 120.00035 * 355.04704 * 5 4 3 7 7 C 1.37880 * 119.99595 * 175.05524 * 5 4 3 8 8 N 1.31509 * 120.00238 * 359.97438 * 7 5 4 9 9 Si 1.86803 * 119.99547 * 179.97438 * 7 5 4 10 10 H 1.48505 * 109.47299 * 59.99500 * 9 7 5 11 11 H 1.48499 * 109.46873 * 179.97438 * 9 7 5 12 12 H 1.48504 * 109.46896 * 299.99686 * 9 7 5 13 13 C 1.46899 * 111.00082 * 63.36073 * 3 2 1 14 14 C 1.50697 * 109.47367 * 66.04364 * 13 3 2 15 15 C 1.38885 * 120.33898 * 90.00019 * 14 13 3 16 16 C 1.38297 * 118.50494 * 180.23438 * 15 14 13 17 17 C 1.39141 * 119.09768 * 359.50093 * 16 15 14 18 18 N 1.39000 * 119.70262 * 180.23275 * 17 16 15 19 19 C 1.47013 * 111.00200 * 303.90592 * 18 17 16 20 20 C 1.53094 * 109.25643 * 177.60790 * 19 18 17 21 21 H 1.08994 * 109.51232 * 296.91439 * 20 19 18 22 22 C 1.53005 * 109.50608 * 176.78539 * 20 19 18 23 23 O 1.43013 * 109.25714 * 56.85693 * 20 19 18 24 24 C 1.43019 * 113.73806 * 301.32038 * 23 20 19 25 25 H 1.08997 * 109.50628 * 178.60703 * 24 23 20 26 26 C 1.52997 * 109.54470 * 298.72085 * 24 23 20 27 27 C 1.47021 * 110.99822 * 180.27475 * 18 17 16 28 28 N 1.32396 * 120.58668 * 0.50498 * 17 16 15 29 29 C 1.31967 * 121.62193 * 359.74834 * 28 17 16 30 30 H 1.09002 * 109.46952 * 181.22114 * 1 2 3 31 31 H 1.08996 * 109.47289 * 301.22062 * 1 2 3 32 32 H 1.08994 * 109.47310 * 61.22372 * 1 2 3 33 33 H 1.08994 * 109.46812 * 240.00171 * 2 1 3 34 34 H 1.08998 * 109.46861 * 120.00139 * 2 1 3 35 35 H 1.08999 * 109.47010 * 53.93444 * 4 3 2 36 36 H 1.09003 * 109.47021 * 173.93766 * 4 3 2 37 37 H 0.97001 * 119.99987 * 180.02562 * 8 7 5 38 38 H 1.08999 * 109.47192 * 306.04073 * 13 3 2 39 39 H 1.09004 * 109.47193 * 186.04279 * 13 3 2 40 40 H 1.07994 * 120.74140 * 359.95116 * 15 14 13 41 41 H 1.08006 * 120.44897 * 179.72887 * 16 15 14 42 42 H 1.08995 * 109.50859 * 297.54928 * 19 18 17 43 43 H 1.09004 * 109.50257 * 57.67687 * 19 18 17 44 44 H 1.09005 * 109.47021 * 300.22111 * 22 20 19 45 45 H 1.09006 * 109.46975 * 60.21768 * 22 20 19 46 46 H 1.08995 * 109.47153 * 180.21957 * 22 20 19 47 47 H 1.08995 * 109.47501 * 179.80060 * 26 24 23 48 48 H 1.09001 * 109.47196 * 299.80121 * 26 24 23 49 49 H 1.09001 * 109.47188 * 59.79922 * 26 24 23 50 50 H 1.09000 * 109.50321 * 302.32557 * 27 18 17 51 51 H 1.08998 * 109.50573 * 62.45478 * 27 18 17 52 52 H 1.08008 * 119.57059 * 179.97438 * 29 28 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.5603 2.1058 -1.1948 5 6 2.1949 1.5016 -2.4209 6 1 2.9322 0.7192 -2.3174 7 6 1.8344 1.9478 -3.6746 8 7 0.9364 2.9003 -3.8006 9 14 2.6216 1.1994 -5.1944 10 1 2.3332 -0.2568 -5.2351 11 1 2.0664 1.8477 -6.4096 12 1 4.0905 1.4119 -5.1466 13 6 1.6153 2.0863 1.2258 14 6 2.3044 1.4625 2.4120 15 6 3.5421 1.9326 2.8315 16 6 4.1425 1.3291 3.9214 17 6 3.4852 0.2843 4.5636 18 7 4.0750 -0.3281 5.6632 19 6 5.4126 -0.8377 5.3281 20 6 6.0481 -1.4492 6.5794 21 1 6.1817 -0.6753 7.3352 22 6 7.4071 -2.0528 6.2193 23 8 5.1912 -2.4735 7.0911 24 6 3.8803 -2.0121 7.4286 25 1 3.2806 -2.8491 7.7861 26 6 3.9783 -0.9489 8.5244 27 6 3.2228 -1.4062 6.1858 28 7 2.3055 -0.1353 4.1332 29 6 1.7116 0.4184 3.0929 30 1 -0.3633 -1.0275 0.0219 31 1 -0.3633 0.5326 0.8788 32 1 -0.3633 0.4947 -0.9007 33 1 1.8933 -0.5138 -0.8900 34 1 1.8933 -0.5139 0.8900 35 1 0.4758 2.0282 -1.2713 36 1 1.8451 3.1552 -1.1178 37 1 0.6825 3.2140 -4.6826 38 1 0.5353 2.0075 1.3501 39 1 1.8969 3.1368 1.1532 40 1 4.0267 2.7480 2.3154 41 1 5.1068 1.6667 4.2716 42 1 5.3283 -1.5995 4.5532 43 1 6.0344 -0.0182 4.9675 44 1 7.2725 -2.8253 5.4621 45 1 8.0598 -1.2717 5.8294 46 1 7.8573 -2.4915 7.1098 47 1 2.9789 -0.5955 8.7783 48 1 4.4464 -1.3809 9.4089 49 1 4.5793 -0.1129 8.1669 50 1 2.2461 -1.0017 6.4514 51 1 3.1034 -2.1772 5.4247 52 1 0.7493 0.0494 2.7698 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001139381982.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:24:40 Heat of formation + Delta-G solvation = 8.107219 kcal Electronic energy + Delta-G solvation = -29350.410386 eV Core-core repulsion = 25543.285874 eV Total energy + Delta-G solvation = -3807.124511 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 333.216 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.02864 -39.62342 -37.43118 -35.74815 -33.79180 -32.81760 -32.36320 -31.25337 -30.12008 -29.35640 -27.31691 -27.15288 -25.56044 -24.16968 -23.72334 -23.04922 -22.41876 -21.35634 -19.76724 -19.29807 -17.72067 -17.03222 -16.39462 -16.24996 -15.66054 -15.53001 -15.28095 -15.03911 -14.90152 -14.77919 -14.57873 -14.06868 -13.79083 -13.54987 -13.20694 -12.93572 -12.83067 -12.76119 -12.63730 -12.47391 -12.22557 -12.02067 -11.88661 -11.78729 -11.63142 -11.41392 -11.32061 -11.10289 -10.98912 -10.73618 -10.66428 -10.54468 -10.16482 -10.08216 -9.90175 -9.62021 -9.54002 -9.37358 -9.19250 -8.45345 -8.03902 -7.21451 -6.04634 -4.05735 1.22310 1.44378 3.23773 3.31756 3.35980 3.38976 3.43868 3.90647 4.31255 4.41568 4.50696 4.60314 4.72243 4.80094 4.85247 5.01241 5.02203 5.07120 5.09286 5.13407 5.18617 5.25481 5.28638 5.31234 5.40090 5.46721 5.51211 5.62060 5.63258 5.73668 5.77220 5.78679 5.81227 5.88716 5.98146 6.01617 6.08004 6.09455 6.15249 6.40335 6.42115 6.56848 6.63902 6.69183 6.89971 6.91552 7.10864 7.26982 7.40575 7.78175 8.04865 8.06588 8.16621 8.52189 9.01999 9.58456 11.05845 Molecular weight = 333.22amu Principal moments of inertia in cm(-1) A = 0.020121 B = 0.002364 C = 0.002264 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1391.244160 B =11839.455259 C =12364.370910 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.060 3.940 3 N -0.530 5.530 4 C 0.189 3.811 5 C -0.505 4.505 6 H 0.061 0.939 7 C 0.056 3.944 8 N -0.899 5.899 9 Si 0.896 3.104 10 H -0.277 1.277 11 H -0.288 1.288 12 H -0.276 1.276 13 C 0.091 3.909 14 C -0.130 4.130 15 C -0.037 4.037 16 C -0.184 4.184 17 C 0.293 3.707 18 N -0.473 5.473 19 C 0.028 3.972 20 C 0.087 3.913 21 H 0.072 0.928 22 C -0.145 4.145 23 O -0.377 6.377 24 C 0.086 3.914 25 H 0.108 0.892 26 C -0.176 4.176 27 C 0.038 3.962 28 N -0.519 5.519 29 C 0.126 3.874 30 H 0.047 0.953 31 H 0.044 0.956 32 H 0.071 0.929 33 H 0.080 0.920 34 H 0.050 0.950 35 H 0.005 0.995 36 H 0.025 0.975 37 H 0.261 0.739 38 H 0.040 0.960 39 H 0.077 0.923 40 H 0.137 0.863 41 H 0.131 0.869 42 H 0.054 0.946 43 H 0.093 0.907 44 H 0.064 0.936 45 H 0.074 0.926 46 H 0.067 0.933 47 H 0.065 0.935 48 H 0.058 0.942 49 H 0.069 0.931 50 H 0.095 0.905 51 H 0.058 0.942 52 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.098 -6.663 23.011 24.985 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.248 4.248 2 C -0.069 4.069 3 N -0.253 5.253 4 C 0.064 3.936 5 C -0.544 4.544 6 H 0.080 0.920 7 C -0.145 4.145 8 N -0.538 5.538 9 Si 0.724 3.276 10 H -0.203 1.203 11 H -0.214 1.214 12 H -0.202 1.202 13 C -0.038 4.038 14 C -0.134 4.134 15 C -0.063 4.063 16 C -0.206 4.206 17 C 0.062 3.938 18 N -0.191 5.191 19 C -0.099 4.099 20 C 0.029 3.971 21 H 0.089 0.911 22 C -0.203 4.203 23 O -0.296 6.296 24 C 0.028 3.972 25 H 0.126 0.874 26 C -0.234 4.234 27 C -0.089 4.089 28 N -0.232 5.232 29 C -0.031 4.031 30 H 0.066 0.934 31 H 0.063 0.937 32 H 0.090 0.910 33 H 0.099 0.901 34 H 0.069 0.931 35 H 0.022 0.978 36 H 0.043 0.957 37 H 0.071 0.929 38 H 0.058 0.942 39 H 0.095 0.905 40 H 0.155 0.845 41 H 0.149 0.851 42 H 0.072 0.928 43 H 0.111 0.889 44 H 0.083 0.917 45 H 0.093 0.907 46 H 0.086 0.914 47 H 0.084 0.916 48 H 0.077 0.923 49 H 0.088 0.912 50 H 0.113 0.887 51 H 0.076 0.924 52 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges 7.255 -7.112 23.713 25.798 hybrid contribution -0.445 0.222 -1.985 2.047 sum 6.810 -6.890 21.727 23.789 Atomic orbital electron populations 1.22401 0.99325 1.00958 1.02138 1.21981 0.92138 0.91469 1.01300 1.62402 1.59350 1.01967 1.01599 1.19801 0.94618 0.93538 0.85624 1.21094 1.22932 1.20456 0.89930 0.92043 1.24968 0.95246 0.95240 0.99071 1.69939 1.31863 1.28402 1.23641 0.86589 0.79644 0.79276 0.82066 1.20315 1.21382 1.20205 1.20961 0.96447 0.97920 0.88451 1.20860 0.96191 0.98124 0.98175 1.21373 0.93413 0.97978 0.93585 1.21468 1.02054 0.98608 0.98482 1.19664 0.91142 0.93477 0.89524 1.59424 1.03721 1.29324 1.26679 1.23001 0.88744 0.99975 0.98184 1.22167 0.90456 0.90605 0.93849 0.91053 1.21757 0.94133 1.01780 1.02617 1.88053 1.23110 1.34889 1.83537 1.22380 0.83938 0.97322 0.93539 0.87421 1.22298 1.03012 0.99746 0.98313 1.22632 0.96999 0.92651 0.96639 1.67528 1.10923 1.29804 1.14982 1.22414 0.98915 0.92053 0.89749 0.93390 0.93727 0.91032 0.90148 0.93114 0.97771 0.95712 0.92889 0.94225 0.90476 0.84494 0.85142 0.92763 0.88893 0.91686 0.90750 0.91378 0.91575 0.92298 0.91189 0.88698 0.92396 0.83129 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.32 9.17 37.16 0.34 -2.98 16 2 C 0.06 1.14 5.52 -3.82 -0.02 1.11 16 3 N -0.53 -10.91 4.69 -237.52 -1.11 -12.02 16 4 C 0.19 4.71 4.49 -4.97 -0.02 4.68 16 5 C -0.51 -13.83 8.41 -34.44 -0.29 -14.12 16 6 H 0.06 1.69 7.30 -52.48 -0.38 1.30 16 7 C 0.06 1.56 5.46 -17.82 -0.10 1.46 16 8 N -0.90 -26.16 13.29 55.43 0.74 -25.43 16 9 Si 0.90 21.43 29.54 -169.99 -5.02 16.40 16 10 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 11 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 12 H -0.28 -6.55 7.11 56.52 0.40 -6.14 16 13 C 0.09 1.55 4.95 -4.98 -0.02 1.53 16 14 C -0.13 -1.98 4.90 -104.46 -0.51 -2.49 16 15 C -0.04 -0.51 9.85 -39.32 -0.39 -0.90 16 16 C -0.18 -2.33 9.22 -39.22 -0.36 -2.70 16 17 C 0.29 3.95 6.41 -155.02 -0.99 2.96 16 18 N -0.47 -5.41 4.12 -172.89 -0.71 -6.12 16 19 C 0.03 0.27 4.68 -3.71 -0.02 0.26 16 20 C 0.09 0.76 3.03 -26.68 -0.08 0.68 16 21 H 0.07 0.59 6.49 -51.93 -0.34 0.25 16 22 C -0.15 -1.01 9.57 37.16 0.36 -0.66 16 23 O -0.38 -3.91 10.28 -35.23 -0.36 -4.27 16 24 C 0.09 0.78 3.92 -26.68 -0.10 0.68 16 25 H 0.11 0.83 8.14 -51.93 -0.42 0.41 16 26 C -0.18 -1.41 8.89 37.16 0.33 -1.08 16 27 C 0.04 0.42 4.23 -3.71 -0.02 0.40 16 28 N -0.52 -7.62 8.71 -12.44 -0.11 -7.73 16 29 C 0.13 1.86 9.08 -17.57 -0.16 1.70 16 30 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 31 H 0.04 0.71 5.73 -51.93 -0.30 0.41 16 32 H 0.07 1.46 6.35 -51.93 -0.33 1.13 16 33 H 0.08 1.70 6.94 -51.93 -0.36 1.34 16 34 H 0.05 0.89 5.94 -51.93 -0.31 0.58 16 35 H 0.00 0.12 6.04 -51.93 -0.31 -0.19 16 36 H 0.02 0.66 7.93 -51.93 -0.41 0.25 16 37 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 38 H 0.04 0.66 6.04 -51.93 -0.31 0.35 16 39 H 0.08 1.30 7.88 -51.93 -0.41 0.89 16 40 H 0.14 1.75 8.06 -52.49 -0.42 1.32 16 41 H 0.13 1.35 7.17 -52.48 -0.38 0.98 16 42 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 43 H 0.09 0.81 6.81 -51.93 -0.35 0.45 16 44 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 45 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 46 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 47 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 48 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 49 H 0.07 0.62 6.13 -51.93 -0.32 0.30 16 50 H 0.09 1.07 7.86 -51.93 -0.41 0.66 16 51 H 0.06 0.72 8.03 -51.93 -0.42 0.30 16 52 H 0.15 2.09 7.34 -52.48 -0.39 1.70 16 LS Contribution 395.21 15.07 5.96 5.96 Total: -1.00 -30.03 395.21 -11.35 -41.38 By element: Atomic # 1 Polarization: 9.95 SS G_CDS: -8.66 Total: 1.29 kcal Atomic # 6 Polarization: -7.40 SS G_CDS: -2.06 Total: -9.46 kcal Atomic # 7 Polarization: -50.09 SS G_CDS: -1.20 Total: -51.29 kcal Atomic # 8 Polarization: -3.91 SS G_CDS: -0.36 Total: -4.27 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.02 Total: 16.40 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -30.03 -11.35 -41.38 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001139381982.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.484 kcal (2) G-P(sol) polarization free energy of solvation -30.026 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.458 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.350 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.376 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.107 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds