Wall clock time and date at job start Tue Mar 31 2020 18:24:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 N 1.46897 * 109.46684 * 2 1 4 4 C 1.46900 * 111.00391 * 299.40180 * 3 2 1 5 5 C 1.50705 * 109.47004 * 293.93884 * 4 3 2 6 6 H 1.08003 * 120.00035 * 355.04704 * 5 4 3 7 7 C 1.37880 * 119.99595 * 175.05524 * 5 4 3 8 8 N 1.31509 * 120.00238 * 359.97438 * 7 5 4 9 9 Si 1.86803 * 119.99547 * 179.97438 * 7 5 4 10 10 H 1.48505 * 109.47299 * 59.99500 * 9 7 5 11 11 H 1.48499 * 109.46873 * 179.97438 * 9 7 5 12 12 H 1.48504 * 109.46896 * 299.99686 * 9 7 5 13 13 C 1.46899 * 111.00082 * 63.36073 * 3 2 1 14 14 C 1.50697 * 109.47367 * 66.04364 * 13 3 2 15 15 C 1.38885 * 120.33898 * 90.00019 * 14 13 3 16 16 C 1.38297 * 118.50494 * 180.23438 * 15 14 13 17 17 C 1.39141 * 119.09768 * 359.50093 * 16 15 14 18 18 N 1.39000 * 119.70262 * 180.23275 * 17 16 15 19 19 C 1.47013 * 111.00200 * 303.90592 * 18 17 16 20 20 C 1.53094 * 109.25643 * 177.60790 * 19 18 17 21 21 H 1.08994 * 109.51232 * 296.91439 * 20 19 18 22 22 C 1.53005 * 109.50608 * 176.78539 * 20 19 18 23 23 O 1.43013 * 109.25714 * 56.85693 * 20 19 18 24 24 C 1.43019 * 113.73806 * 301.32038 * 23 20 19 25 25 H 1.08997 * 109.50628 * 178.60703 * 24 23 20 26 26 C 1.52997 * 109.54470 * 298.72085 * 24 23 20 27 27 C 1.47021 * 110.99822 * 180.27475 * 18 17 16 28 28 N 1.32396 * 120.58668 * 0.50498 * 17 16 15 29 29 C 1.31967 * 121.62193 * 359.74834 * 28 17 16 30 30 H 1.09002 * 109.46952 * 181.22114 * 1 2 3 31 31 H 1.08996 * 109.47289 * 301.22062 * 1 2 3 32 32 H 1.08994 * 109.47310 * 61.22372 * 1 2 3 33 33 H 1.08994 * 109.46812 * 240.00171 * 2 1 3 34 34 H 1.08998 * 109.46861 * 120.00139 * 2 1 3 35 35 H 1.08999 * 109.47010 * 53.93444 * 4 3 2 36 36 H 1.09003 * 109.47021 * 173.93766 * 4 3 2 37 37 H 0.97001 * 119.99987 * 180.02562 * 8 7 5 38 38 H 1.08999 * 109.47192 * 306.04073 * 13 3 2 39 39 H 1.09004 * 109.47193 * 186.04279 * 13 3 2 40 40 H 1.07994 * 120.74140 * 359.95116 * 15 14 13 41 41 H 1.08006 * 120.44897 * 179.72887 * 16 15 14 42 42 H 1.08995 * 109.50859 * 297.54928 * 19 18 17 43 43 H 1.09004 * 109.50257 * 57.67687 * 19 18 17 44 44 H 1.09005 * 109.47021 * 300.22111 * 22 20 19 45 45 H 1.09006 * 109.46975 * 60.21768 * 22 20 19 46 46 H 1.08995 * 109.47153 * 180.21957 * 22 20 19 47 47 H 1.08995 * 109.47501 * 179.80060 * 26 24 23 48 48 H 1.09001 * 109.47196 * 299.80121 * 26 24 23 49 49 H 1.09001 * 109.47188 * 59.79922 * 26 24 23 50 50 H 1.09000 * 109.50321 * 302.32557 * 27 18 17 51 51 H 1.08998 * 109.50573 * 62.45478 * 27 18 17 52 52 H 1.08008 * 119.57059 * 179.97438 * 29 28 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.5603 2.1058 -1.1948 5 6 2.1949 1.5016 -2.4209 6 1 2.9322 0.7192 -2.3174 7 6 1.8344 1.9478 -3.6746 8 7 0.9364 2.9003 -3.8006 9 14 2.6216 1.1994 -5.1944 10 1 2.3332 -0.2568 -5.2351 11 1 2.0664 1.8477 -6.4096 12 1 4.0905 1.4119 -5.1466 13 6 1.6153 2.0863 1.2258 14 6 2.3044 1.4625 2.4120 15 6 3.5421 1.9326 2.8315 16 6 4.1425 1.3291 3.9214 17 6 3.4852 0.2843 4.5636 18 7 4.0750 -0.3281 5.6632 19 6 5.4126 -0.8377 5.3281 20 6 6.0481 -1.4492 6.5794 21 1 6.1817 -0.6753 7.3352 22 6 7.4071 -2.0528 6.2193 23 8 5.1912 -2.4735 7.0911 24 6 3.8803 -2.0121 7.4286 25 1 3.2806 -2.8491 7.7861 26 6 3.9783 -0.9489 8.5244 27 6 3.2228 -1.4062 6.1858 28 7 2.3055 -0.1353 4.1332 29 6 1.7116 0.4184 3.0929 30 1 -0.3633 -1.0275 0.0219 31 1 -0.3633 0.5326 0.8788 32 1 -0.3633 0.4947 -0.9007 33 1 1.8933 -0.5138 -0.8900 34 1 1.8933 -0.5139 0.8900 35 1 0.4758 2.0282 -1.2713 36 1 1.8451 3.1552 -1.1178 37 1 0.6825 3.2140 -4.6826 38 1 0.5353 2.0075 1.3501 39 1 1.8969 3.1368 1.1532 40 1 4.0267 2.7480 2.3154 41 1 5.1068 1.6667 4.2716 42 1 5.3283 -1.5995 4.5532 43 1 6.0344 -0.0182 4.9675 44 1 7.2725 -2.8253 5.4621 45 1 8.0598 -1.2717 5.8294 46 1 7.8573 -2.4915 7.1098 47 1 2.9789 -0.5955 8.7783 48 1 4.4464 -1.3809 9.4089 49 1 4.5793 -0.1129 8.1669 50 1 2.2461 -1.0017 6.4514 51 1 3.1034 -2.1772 5.4247 52 1 0.7493 0.0494 2.7698 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001139381982.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:24:39 Heat of formation + Delta-G solvation = -9.966137 kcal Electronic energy + Delta-G solvation = -29351.194105 eV Core-core repulsion = 25543.285874 eV Total energy + Delta-G solvation = -3807.908231 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 333.216 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.98722 -40.58476 -38.89504 -36.77063 -34.77479 -34.49583 -33.57041 -32.30278 -31.17378 -30.81787 -28.78584 -28.03895 -26.82812 -25.42064 -24.81977 -24.65120 -23.28330 -22.56227 -20.90264 -20.50235 -18.64311 -18.36088 -17.98148 -17.25180 -16.86373 -16.68396 -16.45127 -16.34242 -16.17493 -15.85567 -15.68117 -15.44086 -14.92150 -14.64061 -14.36909 -14.28542 -14.05235 -13.85580 -13.61207 -13.33151 -13.18688 -13.14141 -13.09495 -12.87801 -12.79658 -12.71224 -12.60985 -12.53906 -12.38411 -12.33084 -12.07676 -11.85715 -11.56599 -11.37133 -11.30454 -11.07739 -10.72142 -10.58424 -10.46192 -10.37491 -9.12866 -8.86905 -8.17687 -6.26631 0.12497 0.35339 1.40981 1.42903 1.50847 2.30638 2.41358 2.74286 2.82002 3.14850 3.39192 3.50806 3.71687 3.80826 3.86924 3.96275 4.02789 4.05960 4.11322 4.13097 4.23945 4.25179 4.35855 4.40726 4.40907 4.53473 4.58926 4.62747 4.65523 4.72116 4.74122 4.80014 4.84243 4.93977 4.97814 4.98951 5.01876 5.03622 5.11432 5.23890 5.25140 5.36552 5.37609 5.38565 5.47490 5.53054 5.62583 5.68582 6.08222 6.09794 6.21500 6.36000 6.66089 6.89432 6.97599 7.42412 8.92136 Molecular weight = 333.22amu Principal moments of inertia in cm(-1) A = 0.020121 B = 0.002364 C = 0.002264 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1391.244160 B =11839.455259 C =12364.370910 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.064 3.936 3 N -0.537 5.537 4 C 0.205 3.795 5 C -0.519 4.519 6 H 0.057 0.943 7 C 0.005 3.995 8 N -0.932 5.932 9 Si 0.962 3.038 10 H -0.270 1.270 11 H -0.284 1.284 12 H -0.270 1.270 13 C 0.097 3.903 14 C -0.144 4.144 15 C -0.041 4.041 16 C -0.179 4.179 17 C 0.289 3.711 18 N -0.470 5.470 19 C 0.028 3.972 20 C 0.087 3.913 21 H 0.081 0.919 22 C -0.142 4.142 23 O -0.392 6.392 24 C 0.087 3.913 25 H 0.121 0.879 26 C -0.169 4.169 27 C 0.042 3.958 28 N -0.532 5.532 29 C 0.123 3.877 30 H 0.070 0.930 31 H 0.061 0.939 32 H 0.037 0.963 33 H 0.056 0.944 34 H 0.070 0.930 35 H -0.016 1.016 36 H 0.001 0.999 37 H 0.263 0.737 38 H 0.043 0.957 39 H 0.074 0.926 40 H 0.146 0.854 41 H 0.158 0.842 42 H 0.037 0.963 43 H 0.109 0.891 44 H 0.055 0.945 45 H 0.092 0.908 46 H 0.073 0.927 47 H 0.070 0.930 48 H 0.068 0.932 49 H 0.062 0.938 50 H 0.089 0.911 51 H 0.038 0.962 52 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.575 -7.441 24.491 26.995 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C -0.064 4.064 3 N -0.260 5.260 4 C 0.079 3.921 5 C -0.557 4.557 6 H 0.075 0.925 7 C -0.193 4.193 8 N -0.573 5.573 9 Si 0.787 3.213 10 H -0.195 1.195 11 H -0.209 1.209 12 H -0.195 1.195 13 C -0.031 4.031 14 C -0.147 4.147 15 C -0.067 4.067 16 C -0.201 4.201 17 C 0.057 3.943 18 N -0.188 5.188 19 C -0.098 4.098 20 C 0.029 3.971 21 H 0.099 0.901 22 C -0.200 4.200 23 O -0.312 6.312 24 C 0.029 3.971 25 H 0.138 0.862 26 C -0.227 4.227 27 C -0.085 4.085 28 N -0.246 5.246 29 C -0.034 4.034 30 H 0.089 0.911 31 H 0.080 0.920 32 H 0.056 0.944 33 H 0.074 0.926 34 H 0.088 0.912 35 H 0.002 0.998 36 H 0.019 0.981 37 H 0.072 0.928 38 H 0.061 0.939 39 H 0.093 0.907 40 H 0.164 0.836 41 H 0.175 0.825 42 H 0.055 0.945 43 H 0.127 0.873 44 H 0.074 0.926 45 H 0.111 0.889 46 H 0.092 0.908 47 H 0.089 0.911 48 H 0.087 0.913 49 H 0.081 0.919 50 H 0.108 0.892 51 H 0.057 0.943 52 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges 8.742 -7.904 25.220 27.838 hybrid contribution -0.876 0.448 -2.320 2.520 sum 7.866 -7.456 22.900 25.335 Atomic orbital electron populations 1.22276 0.98107 1.02244 1.01151 1.21917 0.93112 0.90432 1.00942 1.62271 1.59702 1.02565 1.01502 1.19431 0.93087 0.92499 0.87107 1.21387 1.22834 1.20295 0.91187 0.92498 1.25801 0.95714 0.95610 1.02182 1.70059 1.33150 1.29674 1.24381 0.85554 0.78859 0.78648 0.78260 1.19549 1.20908 1.19503 1.20901 0.96957 0.97640 0.87638 1.20655 0.97062 0.99063 0.97930 1.21550 0.92972 0.98204 0.93969 1.21698 1.02853 0.97866 0.97668 1.20030 0.90891 0.93650 0.89718 1.59482 1.04298 1.29405 1.25583 1.23104 0.88121 1.00099 0.98526 1.22302 0.90768 0.90656 0.93332 0.90126 1.21777 0.93431 1.02093 1.02697 1.88046 1.23581 1.35887 1.83641 1.22461 0.83633 0.98072 0.92899 0.86161 1.22234 1.03308 0.99033 0.98097 1.22601 0.97081 0.91925 0.96924 1.67566 1.11733 1.30169 1.15169 1.22474 0.99187 0.91907 0.89864 0.91083 0.92036 0.94439 0.92579 0.91207 0.99838 0.98121 0.92793 0.93856 0.90749 0.83589 0.82486 0.94454 0.87291 0.92576 0.88930 0.90771 0.91055 0.91333 0.91882 0.89217 0.94348 0.82603 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -6.26 9.17 71.98 0.66 -5.60 16 2 C 0.06 2.45 5.52 86.31 0.48 2.92 16 3 N -0.54 -22.42 4.69 -905.37 -4.25 -26.67 16 4 C 0.20 10.54 4.49 85.56 0.38 10.93 16 5 C -0.52 -28.97 8.41 25.60 0.22 -28.76 16 6 H 0.06 3.17 7.30 -2.91 -0.02 3.14 16 7 C 0.01 0.28 5.46 84.66 0.46 0.74 16 8 N -0.93 -55.32 13.29 21.45 0.28 -55.04 16 9 Si 0.96 44.15 29.54 68.60 2.03 46.18 16 10 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 11 H -0.28 -12.73 7.11 99.48 0.71 -12.03 16 12 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 13 C 0.10 3.32 4.95 85.56 0.42 3.74 16 14 C -0.14 -4.25 4.90 -19.76 -0.10 -4.35 16 15 C -0.04 -1.07 9.85 22.44 0.22 -0.85 16 16 C -0.18 -4.17 9.22 22.50 0.21 -3.96 16 17 C 0.29 7.34 6.41 133.07 0.85 8.20 16 18 N -0.47 -9.98 4.12 -700.90 -2.89 -12.87 16 19 C 0.03 0.50 4.68 86.31 0.40 0.90 16 20 C 0.09 1.34 3.03 30.63 0.09 1.44 16 21 H 0.08 1.12 6.49 -2.39 -0.02 1.10 16 22 C -0.14 -1.68 9.57 71.98 0.69 -0.99 16 23 O -0.39 -7.50 10.28 -148.98 -1.53 -9.03 16 24 C 0.09 1.45 3.92 30.63 0.12 1.57 16 25 H 0.12 1.67 8.14 -2.39 -0.02 1.65 16 26 C -0.17 -2.35 8.89 71.98 0.64 -1.71 16 27 C 0.04 0.88 4.23 86.31 0.37 1.24 16 28 N -0.53 -15.10 8.71 -193.26 -1.68 -16.79 16 29 C 0.12 3.51 9.08 84.62 0.77 4.28 16 30 H 0.07 2.12 8.14 -2.39 -0.02 2.10 16 31 H 0.06 1.91 5.73 -2.39 -0.01 1.90 16 32 H 0.04 1.56 6.35 -2.39 -0.02 1.55 16 33 H 0.06 2.40 6.94 -2.39 -0.02 2.38 16 34 H 0.07 2.40 5.94 -2.39 -0.01 2.39 16 35 H -0.02 -0.88 6.04 -2.39 -0.01 -0.90 16 36 H 0.00 0.04 7.93 -2.39 -0.02 0.02 16 37 H 0.26 14.80 8.31 -92.71 -0.77 14.03 16 38 H 0.04 1.44 6.04 -2.39 -0.01 1.43 16 39 H 0.07 2.55 7.88 -2.39 -0.02 2.53 16 40 H 0.15 3.53 8.06 -2.91 -0.02 3.50 16 41 H 0.16 2.76 7.17 -2.91 -0.02 2.74 16 42 H 0.04 0.81 8.14 -2.39 -0.02 0.79 16 43 H 0.11 1.59 6.81 -2.38 -0.02 1.57 16 44 H 0.06 0.76 8.14 -2.38 -0.02 0.75 16 45 H 0.09 0.74 8.14 -2.38 -0.02 0.72 16 46 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 47 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 48 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 49 H 0.06 0.97 6.13 -2.39 -0.01 0.95 16 50 H 0.09 1.94 7.86 -2.39 -0.02 1.93 16 51 H 0.04 0.95 8.03 -2.39 -0.02 0.93 16 52 H 0.16 4.16 7.34 -2.91 -0.02 4.14 16 Total: -1.00 -65.04 395.21 -0.26 -65.30 By element: Atomic # 1 Polarization: 18.27 SS G_CDS: 0.90 Total: 19.16 kcal Atomic # 6 Polarization: -17.13 SS G_CDS: 6.88 Total: -10.25 kcal Atomic # 7 Polarization: -102.83 SS G_CDS: -8.54 Total: -111.36 kcal Atomic # 8 Polarization: -7.50 SS G_CDS: -1.53 Total: -9.03 kcal Atomic # 14 Polarization: 44.15 SS G_CDS: 2.03 Total: 46.18 kcal Total: -65.04 -0.26 -65.30 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001139381982.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.335 kcal (2) G-P(sol) polarization free energy of solvation -65.040 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.705 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.261 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.301 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.966 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds