Wall clock time and date at job start Tue Mar 31 2020 18:24:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46898 * 109.47258 * 2 1 4 4 C 1.46902 * 110.99717 * 299.40251 * 3 2 1 5 5 C 1.50706 * 109.47155 * 293.93322 * 4 3 2 6 6 H 1.07995 * 119.99909 * 355.05597 * 5 4 3 7 7 C 1.37874 * 119.99889 * 175.05434 * 5 4 3 8 8 N 1.31524 * 120.00033 * 0.02562 * 7 5 4 9 9 Si 1.86796 * 119.99964 * 179.97438 * 7 5 4 10 10 H 1.48491 * 109.47230 * 0.02562 * 9 7 5 11 11 H 1.48505 * 109.46877 * 120.00132 * 9 7 5 12 12 H 1.48503 * 109.47146 * 239.99842 * 9 7 5 13 13 C 1.46896 * 111.00022 * 63.35697 * 3 2 1 14 14 C 1.50693 * 109.47321 * 66.04872 * 13 3 2 15 15 C 1.38880 * 120.33973 * 89.99779 * 14 13 3 16 16 C 1.38298 * 118.51066 * 179.97438 * 15 14 13 17 17 C 1.39140 * 119.09372 * 359.97438 * 16 15 14 18 18 N 1.39000 * 119.70352 * 180.02562 * 17 16 15 19 19 C 1.47016 * 110.99843 * 180.02562 * 18 17 16 20 20 C 1.53101 * 109.25712 * 177.60622 * 19 18 17 21 21 H 1.09000 * 109.50503 * 176.82787 * 20 19 18 22 22 C 1.53002 * 109.50951 * 296.91430 * 20 19 18 23 23 O 1.43020 * 109.29064 * 56.87353 * 20 19 18 24 24 C 1.43090 * 113.68565 * 301.34940 * 23 20 19 25 25 H 1.09000 * 109.50020 * 298.69931 * 24 23 20 26 26 C 1.53007 * 109.52782 * 178.60758 * 24 23 20 27 27 C 1.47011 * 111.00233 * 56.37135 * 18 17 16 28 28 N 1.32391 * 120.59017 * 0.28123 * 17 16 15 29 29 C 1.31974 * 121.62051 * 359.43362 * 28 17 16 30 30 H 1.09000 * 109.47162 * 301.22142 * 1 2 3 31 31 H 1.09006 * 109.47231 * 61.22110 * 1 2 3 32 32 H 1.09004 * 109.47545 * 181.22167 * 1 2 3 33 33 H 1.09005 * 109.46882 * 239.99884 * 2 1 3 34 34 H 1.09000 * 109.47249 * 120.00456 * 2 1 3 35 35 H 1.08997 * 109.47405 * 53.93553 * 4 3 2 36 36 H 1.08999 * 109.46843 * 173.93309 * 4 3 2 37 37 H 0.97002 * 119.99765 * 180.02562 * 8 7 5 38 38 H 1.09006 * 109.47055 * 306.04418 * 13 3 2 39 39 H 1.09006 * 109.46998 * 186.04583 * 13 3 2 40 40 H 1.08000 * 120.74510 * 0.02562 * 15 14 13 41 41 H 1.08000 * 120.45299 * 180.02562 * 16 15 14 42 42 H 1.09003 * 109.50577 * 57.67473 * 19 18 17 43 43 H 1.08990 * 109.54391 * 297.56351 * 19 18 17 44 44 H 1.09003 * 109.46784 * 59.91166 * 22 20 19 45 45 H 1.08997 * 109.46982 * 299.91369 * 22 20 19 46 46 H 1.08998 * 109.47063 * 179.91072 * 22 20 19 47 47 H 1.09006 * 109.46736 * 300.17664 * 26 24 23 48 48 H 1.09004 * 109.46993 * 60.17432 * 26 24 23 49 49 H 1.08995 * 109.47170 * 180.17620 * 26 24 23 50 50 H 1.09003 * 109.50195 * 302.32524 * 27 18 17 51 51 H 1.09000 * 109.51002 * 62.44931 * 27 18 17 52 52 H 1.08007 * 119.57353 * 180.28874 * 29 28 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.5603 2.1057 -1.1948 5 6 2.1950 1.5014 -2.4209 6 1 2.9321 0.7190 -2.3175 7 6 1.8344 1.9475 -3.6747 8 7 0.9370 2.9008 -3.8006 9 14 2.6216 1.1991 -5.1944 10 1 3.5930 0.1534 -4.7847 11 1 1.5697 0.5899 -6.0476 12 1 3.3271 2.2586 -5.9592 13 6 1.6154 2.0863 1.2258 14 6 2.3044 1.4625 2.4119 15 6 3.5420 1.9326 2.8314 16 6 4.1400 1.3327 3.9247 17 6 3.4848 0.2849 4.5640 18 7 4.0740 -0.3268 5.6644 19 6 3.2216 -1.4045 6.1873 20 6 3.9333 -2.0884 7.3576 21 1 3.2816 -2.8508 7.7845 22 6 5.2247 -2.7406 6.8596 23 8 4.2451 -1.1130 8.3561 24 6 5.0745 -0.0484 7.8805 25 1 6.0277 -0.4537 7.5410 26 6 5.3190 0.9534 9.0109 27 6 4.3749 0.6562 6.7153 28 7 2.3075 -0.1381 4.1306 29 6 1.7111 0.4190 3.0934 30 1 -0.3633 0.5327 0.8788 31 1 -0.3634 0.4948 -0.9008 32 1 -0.3634 -1.0274 0.0219 33 1 1.8933 -0.5139 -0.8900 34 1 1.8933 -0.5139 0.8899 35 1 0.4758 2.0282 -1.2714 36 1 1.8451 3.1550 -1.1180 37 1 0.6831 3.2144 -4.6828 38 1 0.5353 2.0075 1.3500 39 1 1.8971 3.1368 1.1530 40 1 4.0263 2.7488 2.3160 41 1 5.1020 1.6735 4.2779 42 1 3.0330 -2.1339 5.3996 43 1 2.2753 -0.9867 6.5307 44 1 5.8758 -1.9777 6.4329 45 1 4.9865 -3.4827 6.0976 46 1 5.7316 -3.2259 7.6936 47 1 4.3653 1.3572 9.3510 48 1 5.8174 0.4512 9.8400 49 1 5.9482 1.7655 8.6468 50 1 5.0279 1.4307 6.3129 51 1 3.4476 1.1081 7.0674 52 1 0.7485 0.0506 2.7708 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001139381983.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:24:43 Heat of formation + Delta-G solvation = -10.032363 kcal Electronic energy + Delta-G solvation = -29280.031743 eV Core-core repulsion = 25472.120641 eV Total energy + Delta-G solvation = -3807.911102 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 333.216 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.98403 -40.57943 -38.89084 -36.76808 -34.77271 -34.49277 -33.56685 -32.30028 -31.17000 -30.81657 -28.78589 -28.03740 -26.82495 -25.41722 -24.81803 -24.64925 -23.28022 -22.56024 -20.89936 -20.49895 -18.64272 -18.36594 -17.97902 -17.24305 -16.85072 -16.68687 -16.44843 -16.31780 -16.17994 -15.90596 -15.65696 -15.41945 -14.92838 -14.58308 -14.45682 -14.26916 -14.03569 -13.85629 -13.61231 -13.32564 -13.20924 -13.12593 -13.07984 -12.87682 -12.76472 -12.73520 -12.61319 -12.54459 -12.39165 -12.30368 -12.07202 -11.85813 -11.55167 -11.38205 -11.29602 -11.06144 -10.71764 -10.58917 -10.45881 -10.37786 -9.11945 -8.85672 -8.17946 -6.26599 0.12900 0.35645 1.39928 1.41310 1.54035 2.33221 2.41165 2.74159 2.78815 3.14722 3.39349 3.51552 3.72142 3.80573 3.87205 3.98018 4.02989 4.05982 4.11168 4.13443 4.24704 4.25972 4.36049 4.40938 4.41487 4.53849 4.59091 4.63126 4.65646 4.72402 4.73943 4.79929 4.84488 4.94623 4.97510 4.99126 5.02235 5.04094 5.11396 5.24374 5.25557 5.36118 5.38099 5.39229 5.48131 5.53629 5.63481 5.69258 6.08524 6.10145 6.20707 6.36527 6.66572 6.90072 6.98080 7.42563 8.92276 Molecular weight = 333.22amu Principal moments of inertia in cm(-1) A = 0.023839 B = 0.002228 C = 0.002205 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1174.258351 B =12565.424682 C =12694.405299 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.064 3.936 3 N -0.537 5.537 4 C 0.204 3.796 5 C -0.516 4.516 6 H 0.057 0.943 7 C 0.004 3.996 8 N -0.932 5.932 9 Si 0.962 3.038 10 H -0.267 1.267 11 H -0.280 1.280 12 H -0.279 1.279 13 C 0.097 3.903 14 C -0.144 4.144 15 C -0.040 4.040 16 C -0.179 4.179 17 C 0.290 3.710 18 N -0.473 5.473 19 C 0.043 3.957 20 C 0.088 3.912 21 H 0.121 0.879 22 C -0.171 4.171 23 O -0.390 6.390 24 C 0.085 3.915 25 H 0.078 0.922 26 C -0.141 4.141 27 C 0.029 3.971 28 N -0.533 5.533 29 C 0.123 3.877 30 H 0.060 0.940 31 H 0.036 0.964 32 H 0.071 0.929 33 H 0.056 0.944 34 H 0.070 0.930 35 H -0.016 1.016 36 H 0.001 0.999 37 H 0.263 0.737 38 H 0.043 0.957 39 H 0.074 0.926 40 H 0.146 0.854 41 H 0.157 0.843 42 H 0.086 0.914 43 H 0.042 0.958 44 H 0.061 0.939 45 H 0.068 0.932 46 H 0.068 0.932 47 H 0.058 0.942 48 H 0.072 0.928 49 H 0.092 0.908 50 H 0.110 0.890 51 H 0.042 0.958 52 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.704 -6.204 25.650 27.491 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C -0.064 4.064 3 N -0.261 5.261 4 C 0.078 3.922 5 C -0.554 4.554 6 H 0.075 0.925 7 C -0.194 4.194 8 N -0.573 5.573 9 Si 0.788 3.212 10 H -0.191 1.191 11 H -0.205 1.205 12 H -0.205 1.205 13 C -0.031 4.031 14 C -0.148 4.148 15 C -0.067 4.067 16 C -0.201 4.201 17 C 0.058 3.942 18 N -0.191 5.191 19 C -0.085 4.085 20 C 0.030 3.970 21 H 0.139 0.861 22 C -0.228 4.228 23 O -0.310 6.310 24 C 0.027 3.973 25 H 0.096 0.904 26 C -0.199 4.199 27 C -0.097 4.097 28 N -0.247 5.247 29 C -0.034 4.034 30 H 0.079 0.921 31 H 0.056 0.944 32 H 0.090 0.910 33 H 0.074 0.926 34 H 0.089 0.911 35 H 0.002 0.998 36 H 0.019 0.981 37 H 0.072 0.928 38 H 0.061 0.939 39 H 0.092 0.908 40 H 0.164 0.836 41 H 0.175 0.825 42 H 0.104 0.896 43 H 0.060 0.940 44 H 0.080 0.920 45 H 0.087 0.913 46 H 0.087 0.913 47 H 0.077 0.923 48 H 0.091 0.909 49 H 0.111 0.889 50 H 0.128 0.872 51 H 0.060 0.940 52 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges 8.137 -7.045 26.040 28.176 hybrid contribution -1.174 0.885 -1.920 2.418 sum 6.963 -6.160 24.120 25.849 Atomic orbital electron populations 1.22277 0.98092 1.02271 1.01125 1.21923 0.93105 0.90407 1.01007 1.62266 1.59734 1.02599 1.01498 1.19439 0.93094 0.92506 0.87126 1.21439 1.22667 1.20144 0.91169 0.92524 1.25808 0.95749 0.95642 1.02209 1.70079 1.33277 1.29718 1.24243 0.85436 0.78367 0.78417 0.79015 1.19101 1.20546 1.20463 1.20890 0.96935 0.97630 0.87645 1.20653 0.97208 0.99013 0.97914 1.21547 0.93034 0.98318 0.93792 1.21691 1.02342 0.98087 0.98016 1.20034 0.88748 0.91400 0.94009 1.59448 1.41942 1.11461 1.06223 1.22587 0.94058 0.93853 0.97976 1.22443 0.96977 0.90201 0.87361 0.86108 1.22243 0.97503 1.01229 1.01826 1.88061 1.70327 1.35856 1.36764 1.22330 0.93543 0.87948 0.93458 0.90448 1.21768 1.02781 0.97972 0.97341 1.23097 1.01084 0.94337 0.91172 1.67561 1.09603 1.31446 1.16084 1.22472 0.99167 0.91683 0.90087 0.92071 0.94447 0.91026 0.92567 0.91143 0.99819 0.98112 0.92816 0.93882 0.90767 0.83604 0.82493 0.89568 0.93973 0.91968 0.91283 0.91304 0.92319 0.90915 0.88887 0.87221 0.93987 0.82607 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -6.25 9.17 71.98 0.66 -5.59 16 2 C 0.06 2.44 5.52 86.30 0.48 2.92 16 3 N -0.54 -22.53 4.69 -905.37 -4.25 -26.78 16 4 C 0.20 10.54 4.49 85.56 0.38 10.92 16 5 C -0.52 -28.88 8.41 25.60 0.22 -28.67 16 6 H 0.06 3.18 7.30 -2.91 -0.02 3.16 16 7 C 0.00 0.22 5.46 84.65 0.46 0.68 16 8 N -0.93 -55.36 13.29 21.45 0.28 -55.08 16 9 Si 0.96 44.31 29.54 68.60 2.03 46.34 16 10 H -0.27 -11.93 7.11 99.48 0.71 -11.23 16 11 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 12 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 13 C 0.10 3.33 4.95 85.56 0.42 3.75 16 14 C -0.14 -4.27 4.90 -19.76 -0.10 -4.37 16 15 C -0.04 -1.07 9.85 22.44 0.22 -0.85 16 16 C -0.18 -4.17 9.23 22.50 0.21 -3.96 16 17 C 0.29 7.36 6.40 133.07 0.85 8.21 16 18 N -0.47 -10.03 4.12 -700.92 -2.89 -12.92 16 19 C 0.04 0.89 4.24 86.31 0.37 1.26 16 20 C 0.09 1.47 3.92 30.63 0.12 1.59 16 21 H 0.12 1.68 8.14 -2.39 -0.02 1.66 16 22 C -0.17 -2.53 8.89 71.98 0.64 -1.89 16 23 O -0.39 -7.22 10.29 -148.98 -1.53 -8.76 16 24 C 0.08 1.25 3.02 30.63 0.09 1.34 16 25 H 0.08 1.07 6.49 -2.39 -0.02 1.06 16 26 C -0.14 -1.47 9.57 71.98 0.69 -0.78 16 27 C 0.03 0.49 4.68 86.31 0.40 0.89 16 28 N -0.53 -15.10 8.71 -193.26 -1.68 -16.79 16 29 C 0.12 3.52 9.08 84.62 0.77 4.28 16 30 H 0.06 1.90 5.73 -2.39 -0.01 1.89 16 31 H 0.04 1.56 6.35 -2.38 -0.02 1.54 16 32 H 0.07 2.13 8.14 -2.38 -0.02 2.11 16 33 H 0.06 2.41 6.95 -2.38 -0.02 2.39 16 34 H 0.07 2.44 5.94 -2.39 -0.01 2.42 16 35 H -0.02 -0.87 6.04 -2.39 -0.01 -0.89 16 36 H 0.00 0.04 7.93 -2.39 -0.02 0.03 16 37 H 0.26 14.71 8.31 -92.71 -0.77 13.94 16 38 H 0.04 1.44 6.04 -2.38 -0.01 1.42 16 39 H 0.07 2.54 7.88 -2.38 -0.02 2.52 16 40 H 0.15 3.52 8.06 -2.91 -0.02 3.50 16 41 H 0.16 2.75 7.19 -2.91 -0.02 2.73 16 42 H 0.09 1.95 7.86 -2.39 -0.02 1.93 16 43 H 0.04 1.00 8.03 -2.39 -0.02 0.98 16 44 H 0.06 1.03 6.12 -2.39 -0.01 1.01 16 45 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 46 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 47 H 0.06 0.68 8.14 -2.38 -0.02 0.66 16 48 H 0.07 0.71 8.14 -2.38 -0.02 0.69 16 49 H 0.09 0.61 8.14 -2.39 -0.02 0.59 16 50 H 0.11 1.44 6.83 -2.39 -0.02 1.43 16 51 H 0.04 0.81 8.14 -2.39 -0.02 0.79 16 52 H 0.16 4.15 7.34 -2.91 -0.02 4.13 16 Total: -1.00 -65.37 395.25 -0.26 -65.63 By element: Atomic # 1 Polarization: 17.73 SS G_CDS: 0.90 Total: 18.63 kcal Atomic # 6 Polarization: -17.16 SS G_CDS: 6.88 Total: -10.27 kcal Atomic # 7 Polarization: -103.03 SS G_CDS: -8.53 Total: -111.57 kcal Atomic # 8 Polarization: -7.22 SS G_CDS: -1.53 Total: -8.76 kcal Atomic # 14 Polarization: 44.31 SS G_CDS: 2.03 Total: 46.34 kcal Total: -65.37 -0.26 -65.63 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001139381983.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.593 kcal (2) G-P(sol) polarization free energy of solvation -65.367 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.773 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.259 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.626 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.032 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds