Wall clock time and date at job start Tue Mar 31 2020 18:31:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46505 * 109.47128 * 2 1 4 4 C 1.46501 * 119.99681 * 89.99755 * 3 2 1 5 5 C 1.50703 * 109.47670 * 270.00518 * 4 3 2 6 6 O 1.21282 * 119.99513 * 359.97438 * 5 4 3 7 7 N 1.34770 * 119.99953 * 180.02562 * 5 4 3 8 8 C 1.46501 * 119.99608 * 179.97438 * 7 5 4 9 9 H 1.08993 * 109.47437 * 34.99780 * 8 7 5 10 10 C 1.53001 * 109.47050 * 274.99670 * 8 7 5 11 11 C 1.53001 * 109.47107 * 154.99829 * 8 7 5 12 12 C 1.52997 * 109.47049 * 294.99725 * 11 8 7 13 13 H 1.09001 * 109.46832 * 55.00084 * 12 11 8 14 14 C 1.53006 * 109.47127 * 174.99763 * 12 11 8 15 15 N 1.46492 * 109.47244 * 295.00135 * 12 11 8 16 16 C 1.36940 * 120.00114 * 155.00043 * 15 12 11 17 17 H 1.07993 * 119.99751 * 359.97438 * 16 15 12 18 18 C 1.38813 * 120.00020 * 179.97438 * 16 15 12 19 19 N 1.31623 * 120.00145 * 0.02562 * 18 16 15 20 20 Si 1.86797 * 119.99789 * 179.97438 * 18 16 15 21 21 H 1.48500 * 109.47414 * 60.00498 * 20 18 16 22 22 H 1.48506 * 109.47174 * 180.02562 * 20 18 16 23 23 H 1.48499 * 109.47185 * 299.99814 * 20 18 16 24 24 C 1.39675 * 120.00365 * 270.00314 * 3 2 1 25 25 C 1.38904 * 120.07447 * 179.72234 * 24 3 2 26 26 C 1.38102 * 119.92431 * 179.76918 * 25 24 3 27 27 C 1.38289 * 120.07480 * 0.50544 * 26 25 24 28 28 C 1.38279 * 120.14555 * 359.74757 * 27 26 25 29 29 C 1.38102 * 120.08131 * 359.97438 * 28 27 26 30 30 H 1.09004 * 109.46995 * 59.99633 * 1 2 3 31 31 H 1.08999 * 109.47368 * 179.97438 * 1 2 3 32 32 H 1.09004 * 109.46827 * 299.99776 * 1 2 3 33 33 H 1.09004 * 109.47149 * 240.00662 * 2 1 3 34 34 H 1.09001 * 109.47362 * 120.00012 * 2 1 3 35 35 H 1.09000 * 109.46919 * 149.99890 * 4 3 2 36 36 H 1.09000 * 109.47122 * 30.00721 * 4 3 2 37 37 H 0.97001 * 120.00414 * 359.97438 * 7 5 4 38 38 H 1.09000 * 109.47307 * 60.00051 * 10 8 7 39 39 H 1.09000 * 109.47516 * 180.02562 * 10 8 7 40 40 H 1.09006 * 109.47111 * 299.99943 * 10 8 7 41 41 H 1.08998 * 109.47252 * 174.99920 * 11 8 7 42 42 H 1.09006 * 109.47074 * 55.00113 * 11 8 7 43 43 H 1.09000 * 109.47050 * 180.02562 * 14 12 11 44 44 H 1.09001 * 109.46801 * 300.00272 * 14 12 11 45 45 H 1.09001 * 109.46998 * 59.99868 * 14 12 11 46 46 H 0.97005 * 120.00153 * 334.99565 * 15 12 11 47 47 H 0.96993 * 119.99993 * 179.97438 * 19 18 16 48 48 H 1.08006 * 120.03882 * 359.97438 * 25 24 3 49 49 H 1.08007 * 119.96733 * 180.25066 * 26 25 24 50 50 H 1.07992 * 119.92579 * 179.72143 * 27 26 25 51 51 H 1.08001 * 119.96172 * 179.97438 * 28 27 26 52 52 H 1.08000 * 120.04443 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3813 0.0000 4 6 2.2625 2.0718 1.2688 5 6 1.0066 2.7822 1.7040 6 8 0.0063 2.7183 1.0212 7 7 0.9955 3.4892 2.8512 8 6 -0.2252 4.1802 3.2739 9 1 -1.0951 3.5898 2.9864 10 6 -0.2944 5.5519 2.5996 11 6 -0.2099 4.3591 4.7934 12 6 -0.2667 2.9875 5.4689 13 1 0.5469 2.3651 5.0963 14 6 -0.1259 3.1584 6.9829 15 7 -1.5492 2.3471 5.1670 16 6 -1.6574 0.9823 5.1990 17 1 -0.7971 0.3782 5.4464 18 6 -2.8727 0.3756 4.9133 19 7 -3.9211 1.1119 4.6113 20 14 -3.0201 -1.4861 4.9563 21 1 -2.6846 -1.9780 6.3167 22 1 -4.4107 -1.8806 4.6158 23 1 -2.0822 -2.0798 3.9699 24 6 2.2511 2.0398 -1.2096 25 6 2.7086 3.3513 -1.2113 26 6 2.9423 3.9979 -2.4090 27 6 2.7113 3.3446 -3.6058 28 6 2.2509 2.0407 -3.6076 29 6 2.0206 1.3863 -2.4135 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 -0.3633 0.5138 0.8901 33 1 1.8934 -0.5137 -0.8901 34 1 1.8934 -0.5138 0.8900 35 1 3.0644 2.7985 1.1385 36 1 2.5506 1.3451 2.0284 37 1 1.7957 3.5406 3.3971 38 1 -0.3052 5.4245 1.5171 39 1 -1.2023 6.0662 2.9144 40 1 0.5756 6.1424 2.8873 41 1 -1.0734 4.9502 5.0984 42 1 0.7049 4.8725 5.0896 43 1 -0.1658 2.1812 7.4641 44 1 0.8284 3.6349 7.2075 45 1 -0.9394 3.7809 7.3555 46 1 -2.3218 2.8898 4.9444 47 1 -4.7702 0.6879 4.4114 48 1 2.8846 3.8638 -0.2770 49 1 3.3019 5.0163 -2.4112 50 1 2.8906 3.8540 -4.5410 51 1 2.0711 1.5335 -4.5440 52 1 1.6606 0.3681 -2.4156 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001146544656.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:31:01 Heat of formation + Delta-G solvation = 4.119936 kcal Electronic energy + Delta-G solvation = -30013.375958 eV Core-core repulsion = 26206.078545 eV Total energy + Delta-G solvation = -3807.297413 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 333.216 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.09375 -38.98640 -37.00216 -36.01001 -34.35606 -32.24660 -31.81178 -30.88452 -30.56082 -29.38631 -28.58136 -26.50306 -26.23208 -23.61727 -23.30163 -22.32232 -21.44796 -20.53812 -19.98025 -19.68534 -17.78827 -17.36057 -16.85236 -16.20389 -15.64031 -15.31187 -15.01376 -14.66684 -14.34201 -14.05052 -13.97917 -13.73398 -13.58883 -13.47307 -13.22263 -12.95491 -12.79934 -12.68219 -12.43277 -12.16765 -12.03916 -11.86704 -11.73360 -11.66519 -11.55108 -11.30116 -11.02137 -10.91902 -10.81789 -10.63687 -10.52595 -10.40331 -10.24237 -10.09823 -9.89387 -9.60929 -9.31844 -8.87169 -8.86782 -8.61960 -7.25278 -6.91151 -5.72090 -3.00061 1.49135 1.66971 2.94927 3.01323 3.44629 3.48849 3.50570 3.61640 3.98085 4.62178 4.79443 4.85958 4.98188 5.03004 5.14730 5.17706 5.21734 5.27772 5.44564 5.47824 5.50250 5.51069 5.56576 5.62541 5.64615 5.71647 5.75647 5.91390 5.95499 5.97197 6.02707 6.08133 6.14745 6.22166 6.30240 6.34901 6.38447 6.45272 6.52230 6.58288 6.67040 6.72748 6.77507 6.85450 6.89954 6.98000 7.07754 7.23769 7.52662 7.71304 7.87974 8.46121 8.64731 9.57238 10.15242 10.49270 11.50556 Molecular weight = 333.22amu Principal moments of inertia in cm(-1) A = 0.011675 B = 0.003700 C = 0.003068 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2397.707784 B = 7566.663725 C = 9124.851091 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.123 3.877 3 N -0.605 5.605 4 C 0.103 3.897 5 C 0.487 3.513 6 O -0.512 6.512 7 N -0.719 5.719 8 C 0.146 3.854 9 H 0.104 0.896 10 C -0.160 4.160 11 C -0.130 4.130 12 C 0.173 3.827 13 H 0.045 0.955 14 C -0.166 4.166 15 N -0.720 5.720 16 C -0.235 4.235 17 H 0.065 0.935 18 C -0.010 4.010 19 N -0.931 5.931 20 Si 0.902 3.098 21 H -0.288 1.288 22 H -0.292 1.292 23 H -0.287 1.287 24 C 0.232 3.768 25 C -0.197 4.197 26 C -0.074 4.074 27 C -0.187 4.187 28 C -0.074 4.074 29 C -0.195 4.195 30 H 0.055 0.945 31 H 0.054 0.946 32 H 0.076 0.924 33 H 0.073 0.927 34 H 0.072 0.928 35 H 0.099 0.901 36 H 0.102 0.898 37 H 0.392 0.608 38 H 0.055 0.945 39 H 0.062 0.938 40 H 0.048 0.952 41 H 0.073 0.927 42 H 0.060 0.940 43 H 0.051 0.949 44 H 0.033 0.967 45 H 0.045 0.955 46 H 0.383 0.617 47 H 0.255 0.745 48 H 0.116 0.884 49 H 0.116 0.884 50 H 0.113 0.887 51 H 0.117 0.883 52 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.130 5.694 -9.609 20.450 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.001 3.999 3 N -0.313 5.313 4 C -0.024 4.024 5 C 0.270 3.730 6 O -0.386 6.386 7 N -0.372 5.372 8 C 0.042 3.958 9 H 0.122 0.878 10 C -0.218 4.218 11 C -0.169 4.169 12 C 0.063 3.937 13 H 0.063 0.937 14 C -0.226 4.226 15 N -0.362 5.362 16 C -0.366 4.366 17 H 0.083 0.917 18 C -0.206 4.206 19 N -0.579 5.579 20 Si 0.733 3.267 21 H -0.215 1.215 22 H -0.217 1.217 23 H -0.214 1.214 24 C 0.130 3.870 25 C -0.219 4.219 26 C -0.092 4.092 27 C -0.207 4.207 28 C -0.093 4.093 29 C -0.218 4.218 30 H 0.074 0.926 31 H 0.073 0.927 32 H 0.095 0.905 33 H 0.091 0.909 34 H 0.091 0.909 35 H 0.117 0.883 36 H 0.120 0.880 37 H 0.225 0.775 38 H 0.074 0.926 39 H 0.081 0.919 40 H 0.067 0.933 41 H 0.092 0.908 42 H 0.078 0.922 43 H 0.070 0.930 44 H 0.052 0.948 45 H 0.064 0.936 46 H 0.216 0.784 47 H 0.064 0.936 48 H 0.134 0.866 49 H 0.134 0.866 50 H 0.131 0.869 51 H 0.135 0.865 52 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 16.356 5.336 -9.955 19.877 hybrid contribution -0.211 -0.799 0.461 0.947 sum 16.145 4.537 -9.494 19.271 Atomic orbital electron populations 1.22232 0.95127 1.01232 1.04340 1.21469 0.95199 0.81210 1.02050 1.46172 1.70600 1.12862 1.01684 1.21318 0.95758 0.98049 0.87312 1.21239 0.90919 0.79391 0.81444 1.90735 1.34489 1.60172 1.53234 1.46001 1.14850 1.52475 1.23831 1.20970 0.88751 0.92513 0.93583 0.87847 1.22170 1.01354 0.97097 1.01184 1.22163 1.01810 0.99135 0.93813 1.20199 0.90563 0.91147 0.91779 0.93734 1.22467 0.98949 1.01132 1.00051 1.42385 1.06807 1.03977 1.82983 1.19082 0.95040 0.83007 1.39482 0.91671 1.24679 0.95999 0.97385 1.02581 1.69633 1.00720 1.33836 1.53704 0.86357 0.76694 0.86088 0.77569 1.21452 1.21745 1.21387 1.17773 0.92285 0.91289 0.85662 1.20610 1.08762 0.94090 0.98450 1.20827 0.97472 0.98875 0.92057 1.20830 1.06442 0.95776 0.97622 1.20849 0.96820 0.94590 0.97065 1.20679 1.09006 1.00984 0.91090 0.92560 0.92705 0.90465 0.90899 0.90941 0.88288 0.87955 0.77535 0.92619 0.91935 0.93276 0.90798 0.92156 0.92961 0.94755 0.93563 0.78372 0.93553 0.86645 0.86575 0.86854 0.86519 0.86096 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.69 9.50 37.16 0.35 -2.34 16 2 C 0.12 1.55 5.92 -4.04 -0.02 1.53 16 3 N -0.60 -7.87 2.16 -173.11 -0.37 -8.24 16 4 C 0.10 1.20 5.68 -5.19 -0.03 1.17 16 5 C 0.49 7.48 7.77 -10.99 -0.09 7.40 16 6 O -0.51 -10.31 13.69 5.56 0.08 -10.24 16 7 N -0.72 -9.82 4.45 -53.81 -0.24 -10.06 16 8 C 0.15 2.31 2.52 -67.93 -0.17 2.14 16 9 H 0.10 2.20 7.05 -51.93 -0.37 1.83 16 10 C -0.16 -2.21 9.48 37.16 0.35 -1.86 16 11 C -0.13 -1.95 4.29 -26.73 -0.11 -2.06 16 12 C 0.17 3.19 2.84 -67.93 -0.19 3.00 16 13 H 0.04 0.83 7.56 -51.93 -0.39 0.44 16 14 C -0.17 -2.84 9.49 37.16 0.35 -2.49 16 15 N -0.72 -17.39 4.49 -53.43 -0.24 -17.63 16 16 C -0.23 -6.41 9.93 -15.06 -0.15 -6.56 16 17 H 0.07 1.74 7.83 -52.49 -0.41 1.33 16 18 C -0.01 -0.30 5.50 -17.43 -0.10 -0.39 16 19 N -0.93 -28.30 13.06 55.49 0.72 -27.58 16 20 Si 0.90 22.63 29.55 -169.99 -5.02 17.60 16 21 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 22 H -0.29 -7.43 7.11 56.52 0.40 -7.02 16 23 H -0.29 -7.10 7.11 56.52 0.40 -6.69 16 24 C 0.23 3.11 6.55 -83.79 -0.55 2.56 16 25 C -0.20 -2.48 9.20 -39.38 -0.36 -2.84 16 26 C -0.07 -0.84 10.04 -39.61 -0.40 -1.24 16 27 C -0.19 -2.08 10.04 -39.55 -0.40 -2.48 16 28 C -0.07 -0.85 10.04 -39.62 -0.40 -1.25 16 29 C -0.20 -2.47 9.21 -39.38 -0.36 -2.84 16 30 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 31 H 0.05 0.79 8.14 -51.93 -0.42 0.36 16 32 H 0.08 1.53 6.39 -51.93 -0.33 1.20 16 33 H 0.07 0.78 6.20 -51.93 -0.32 0.46 16 34 H 0.07 0.83 7.89 -51.93 -0.41 0.42 16 35 H 0.10 0.90 6.21 -51.93 -0.32 0.58 16 36 H 0.10 1.01 7.89 -51.93 -0.41 0.60 16 37 H 0.39 4.08 8.60 -40.82 -0.35 3.72 16 38 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 39 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 40 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 41 H 0.07 1.14 8.14 -51.93 -0.42 0.71 16 42 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 43 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 44 H 0.03 0.48 8.14 -51.93 -0.42 0.05 16 45 H 0.05 0.81 8.14 -51.93 -0.42 0.38 16 46 H 0.38 10.03 7.80 -40.82 -0.32 9.71 16 47 H 0.25 7.59 8.31 -40.82 -0.34 7.25 16 48 H 0.12 1.33 6.15 -52.48 -0.32 1.00 16 49 H 0.12 1.07 8.06 -52.48 -0.42 0.64 16 50 H 0.11 1.02 8.06 -52.49 -0.42 0.60 16 51 H 0.12 1.07 8.06 -52.49 -0.42 0.64 16 52 H 0.12 1.41 6.14 -52.49 -0.32 1.09 16 LS Contribution 416.34 15.07 6.27 6.27 Total: -1.00 -33.42 416.34 -9.98 -43.40 By element: Atomic # 1 Polarization: 23.92 SS G_CDS: -8.91 Total: 15.01 kcal Atomic # 6 Polarization: -6.28 SS G_CDS: -2.27 Total: -8.55 kcal Atomic # 7 Polarization: -63.38 SS G_CDS: -0.13 Total: -63.51 kcal Atomic # 8 Polarization: -10.31 SS G_CDS: 0.08 Total: -10.24 kcal Atomic # 14 Polarization: 22.63 SS G_CDS: -5.02 Total: 17.60 kcal Total LS contribution 6.27 Total: 6.27 kcal Total: -33.42 -9.98 -43.40 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001146544656.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.521 kcal (2) G-P(sol) polarization free energy of solvation -33.417 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.104 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.984 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.402 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.120 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds