Wall clock time and date at job start Tue Mar 31 2020 18:31:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46505 * 109.47128 * 2 1 4 4 C 1.46501 * 119.99681 * 89.99755 * 3 2 1 5 5 C 1.50703 * 109.47670 * 270.00518 * 4 3 2 6 6 O 1.21282 * 119.99513 * 359.97438 * 5 4 3 7 7 N 1.34770 * 119.99953 * 180.02562 * 5 4 3 8 8 C 1.46501 * 119.99608 * 179.97438 * 7 5 4 9 9 H 1.08993 * 109.47437 * 34.99780 * 8 7 5 10 10 C 1.53001 * 109.47050 * 274.99670 * 8 7 5 11 11 C 1.53001 * 109.47107 * 154.99829 * 8 7 5 12 12 C 1.52997 * 109.47049 * 294.99725 * 11 8 7 13 13 H 1.09001 * 109.46832 * 55.00084 * 12 11 8 14 14 C 1.53006 * 109.47127 * 174.99763 * 12 11 8 15 15 N 1.46492 * 109.47244 * 295.00135 * 12 11 8 16 16 C 1.36940 * 120.00114 * 155.00043 * 15 12 11 17 17 H 1.07993 * 119.99751 * 359.97438 * 16 15 12 18 18 C 1.38813 * 120.00020 * 179.97438 * 16 15 12 19 19 N 1.31623 * 120.00145 * 0.02562 * 18 16 15 20 20 Si 1.86797 * 119.99789 * 179.97438 * 18 16 15 21 21 H 1.48500 * 109.47414 * 60.00498 * 20 18 16 22 22 H 1.48506 * 109.47174 * 180.02562 * 20 18 16 23 23 H 1.48499 * 109.47185 * 299.99814 * 20 18 16 24 24 C 1.39675 * 120.00365 * 270.00314 * 3 2 1 25 25 C 1.38904 * 120.07447 * 179.72234 * 24 3 2 26 26 C 1.38102 * 119.92431 * 179.76918 * 25 24 3 27 27 C 1.38289 * 120.07480 * 0.50544 * 26 25 24 28 28 C 1.38279 * 120.14555 * 359.74757 * 27 26 25 29 29 C 1.38102 * 120.08131 * 359.97438 * 28 27 26 30 30 H 1.09004 * 109.46995 * 59.99633 * 1 2 3 31 31 H 1.08999 * 109.47368 * 179.97438 * 1 2 3 32 32 H 1.09004 * 109.46827 * 299.99776 * 1 2 3 33 33 H 1.09004 * 109.47149 * 240.00662 * 2 1 3 34 34 H 1.09001 * 109.47362 * 120.00012 * 2 1 3 35 35 H 1.09000 * 109.46919 * 149.99890 * 4 3 2 36 36 H 1.09000 * 109.47122 * 30.00721 * 4 3 2 37 37 H 0.97001 * 120.00414 * 359.97438 * 7 5 4 38 38 H 1.09000 * 109.47307 * 60.00051 * 10 8 7 39 39 H 1.09000 * 109.47516 * 180.02562 * 10 8 7 40 40 H 1.09006 * 109.47111 * 299.99943 * 10 8 7 41 41 H 1.08998 * 109.47252 * 174.99920 * 11 8 7 42 42 H 1.09006 * 109.47074 * 55.00113 * 11 8 7 43 43 H 1.09000 * 109.47050 * 180.02562 * 14 12 11 44 44 H 1.09001 * 109.46801 * 300.00272 * 14 12 11 45 45 H 1.09001 * 109.46998 * 59.99868 * 14 12 11 46 46 H 0.97005 * 120.00153 * 334.99565 * 15 12 11 47 47 H 0.96993 * 119.99993 * 179.97438 * 19 18 16 48 48 H 1.08006 * 120.03882 * 359.97438 * 25 24 3 49 49 H 1.08007 * 119.96733 * 180.25066 * 26 25 24 50 50 H 1.07992 * 119.92579 * 179.72143 * 27 26 25 51 51 H 1.08001 * 119.96172 * 179.97438 * 28 27 26 52 52 H 1.08000 * 120.04443 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3813 0.0000 4 6 2.2625 2.0718 1.2688 5 6 1.0066 2.7822 1.7040 6 8 0.0063 2.7183 1.0212 7 7 0.9955 3.4892 2.8512 8 6 -0.2252 4.1802 3.2739 9 1 -1.0951 3.5898 2.9864 10 6 -0.2944 5.5519 2.5996 11 6 -0.2099 4.3591 4.7934 12 6 -0.2667 2.9875 5.4689 13 1 0.5469 2.3651 5.0963 14 6 -0.1259 3.1584 6.9829 15 7 -1.5492 2.3471 5.1670 16 6 -1.6574 0.9823 5.1990 17 1 -0.7971 0.3782 5.4464 18 6 -2.8727 0.3756 4.9133 19 7 -3.9211 1.1119 4.6113 20 14 -3.0201 -1.4861 4.9563 21 1 -2.6846 -1.9780 6.3167 22 1 -4.4107 -1.8806 4.6158 23 1 -2.0822 -2.0798 3.9699 24 6 2.2511 2.0398 -1.2096 25 6 2.7086 3.3513 -1.2113 26 6 2.9423 3.9979 -2.4090 27 6 2.7113 3.3446 -3.6058 28 6 2.2509 2.0407 -3.6076 29 6 2.0206 1.3863 -2.4135 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 -0.3633 0.5138 0.8901 33 1 1.8934 -0.5137 -0.8901 34 1 1.8934 -0.5138 0.8900 35 1 3.0644 2.7985 1.1385 36 1 2.5506 1.3451 2.0284 37 1 1.7957 3.5406 3.3971 38 1 -0.3052 5.4245 1.5171 39 1 -1.2023 6.0662 2.9144 40 1 0.5756 6.1424 2.8873 41 1 -1.0734 4.9502 5.0984 42 1 0.7049 4.8725 5.0896 43 1 -0.1658 2.1812 7.4641 44 1 0.8284 3.6349 7.2075 45 1 -0.9394 3.7809 7.3555 46 1 -2.3218 2.8898 4.9444 47 1 -4.7702 0.6879 4.4114 48 1 2.8846 3.8638 -0.2770 49 1 3.3019 5.0163 -2.4112 50 1 2.8906 3.8540 -4.5410 51 1 2.0711 1.5335 -4.5440 52 1 1.6606 0.3681 -2.4156 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001146544656.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:31:00 Heat of formation + Delta-G solvation = -16.117409 kcal Electronic energy + Delta-G solvation = -30014.253515 eV Core-core repulsion = 26206.078545 eV Total energy + Delta-G solvation = -3808.174970 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 333.216 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.16783 -40.05347 -38.34034 -37.12357 -35.91774 -34.00433 -32.97687 -32.09987 -31.50716 -30.54585 -30.24158 -27.64267 -27.40544 -25.65165 -24.33258 -23.31981 -22.56701 -21.76215 -21.13212 -21.04664 -19.27964 -18.70994 -18.13722 -17.37113 -16.78469 -16.52178 -16.27319 -15.99276 -15.64096 -15.48813 -15.38580 -15.02131 -14.64188 -14.58091 -14.41275 -14.40056 -14.07837 -13.81908 -13.60594 -13.47618 -13.33056 -13.18819 -13.03998 -12.89660 -12.77962 -12.69104 -12.60209 -12.25832 -12.21745 -12.17571 -11.98760 -11.80613 -11.56128 -11.52674 -11.39801 -11.17314 -10.89792 -10.46679 -9.85884 -9.76480 -8.93986 -8.20922 -7.91208 -5.16430 0.59647 0.76087 1.41879 1.44842 1.50256 1.84033 2.00461 2.53213 2.56654 3.07211 3.43570 3.82231 3.89702 3.94701 3.97092 4.06297 4.16444 4.18611 4.28006 4.30936 4.36572 4.42755 4.48557 4.55289 4.56925 4.64558 4.66887 4.70901 4.78989 4.80192 4.83861 4.90134 4.96639 4.98724 5.05108 5.11115 5.20075 5.24984 5.36463 5.37659 5.43083 5.46270 5.53418 5.64476 5.65582 5.76247 5.79190 6.03515 6.28261 6.31371 6.58289 6.80946 7.37115 7.53036 8.18155 8.37385 9.32566 Molecular weight = 333.22amu Principal moments of inertia in cm(-1) A = 0.011675 B = 0.003700 C = 0.003068 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2397.707784 B = 7566.663725 C = 9124.851091 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.126 3.874 3 N -0.610 5.610 4 C 0.107 3.893 5 C 0.479 3.521 6 O -0.569 6.569 7 N -0.707 5.707 8 C 0.151 3.849 9 H 0.040 0.960 10 C -0.148 4.148 11 C -0.117 4.117 12 C 0.166 3.834 13 H 0.047 0.953 14 C -0.157 4.157 15 N -0.732 5.732 16 C -0.223 4.223 17 H 0.071 0.929 18 C -0.078 4.078 19 N -0.971 5.971 20 Si 0.960 3.040 21 H -0.276 1.276 22 H -0.301 1.301 23 H -0.282 1.282 24 C 0.211 3.789 25 C -0.210 4.210 26 C -0.081 4.081 27 C -0.192 4.192 28 C -0.082 4.082 29 C -0.213 4.213 30 H 0.037 0.963 31 H 0.063 0.937 32 H 0.031 0.969 33 H 0.094 0.906 34 H 0.088 0.912 35 H 0.130 0.870 36 H 0.125 0.875 37 H 0.412 0.588 38 H 0.032 0.968 39 H 0.062 0.938 40 H 0.082 0.918 41 H 0.069 0.931 42 H 0.107 0.893 43 H 0.029 0.971 44 H 0.077 0.923 45 H 0.038 0.962 46 H 0.368 0.632 47 H 0.246 0.754 48 H 0.124 0.876 49 H 0.138 0.862 50 H 0.136 0.864 51 H 0.137 0.863 52 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.678 6.456 -9.315 23.580 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.004 3.996 3 N -0.319 5.319 4 C -0.020 4.020 5 C 0.264 3.736 6 O -0.447 6.447 7 N -0.361 5.361 8 C 0.046 3.954 9 H 0.058 0.942 10 C -0.207 4.207 11 C -0.155 4.155 12 C 0.058 3.942 13 H 0.065 0.935 14 C -0.217 4.217 15 N -0.372 5.372 16 C -0.355 4.355 17 H 0.089 0.911 18 C -0.270 4.270 19 N -0.622 5.622 20 Si 0.790 3.210 21 H -0.202 1.202 22 H -0.227 1.227 23 H -0.208 1.208 24 C 0.109 3.891 25 C -0.233 4.233 26 C -0.099 4.099 27 C -0.212 4.212 28 C -0.101 4.101 29 C -0.235 4.235 30 H 0.057 0.943 31 H 0.082 0.918 32 H 0.050 0.950 33 H 0.112 0.888 34 H 0.106 0.894 35 H 0.148 0.852 36 H 0.142 0.858 37 H 0.248 0.752 38 H 0.052 0.948 39 H 0.081 0.919 40 H 0.101 0.899 41 H 0.088 0.912 42 H 0.125 0.875 43 H 0.048 0.952 44 H 0.096 0.904 45 H 0.058 0.942 46 H 0.199 0.801 47 H 0.054 0.946 48 H 0.142 0.858 49 H 0.156 0.844 50 H 0.154 0.846 51 H 0.155 0.845 52 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 20.004 6.118 -9.617 23.023 hybrid contribution -1.260 -0.949 0.339 1.613 sum 18.744 5.169 -9.278 21.544 Atomic orbital electron populations 1.22121 0.98035 1.00700 1.01104 1.21478 0.92519 0.81836 1.03801 1.46256 1.70573 1.12941 1.02095 1.21485 0.94239 0.98899 0.87365 1.22065 0.91516 0.78907 0.81085 1.90723 1.36828 1.62098 1.55009 1.45874 1.14840 1.51694 1.23653 1.20685 0.87522 0.92675 0.94523 0.94153 1.22050 1.02973 0.96194 0.99462 1.22062 1.03929 0.97173 0.92385 1.20504 0.87785 0.92713 0.93201 0.93526 1.22319 1.01085 1.00230 0.98026 1.42613 1.08548 1.03043 1.82964 1.19462 0.94741 0.84711 1.36621 0.91080 1.25418 0.96149 1.01358 1.04039 1.69802 1.00928 1.35187 1.56296 0.85403 0.76019 0.81600 0.77989 1.20202 1.22745 1.20806 1.18037 0.93051 0.91956 0.86015 1.20832 1.09055 0.93978 0.99389 1.21170 0.97009 0.99921 0.91819 1.21183 1.05624 0.95756 0.98589 1.21174 0.96326 0.95008 0.97548 1.20890 1.09532 1.01483 0.91579 0.94350 0.91836 0.94971 0.88825 0.89390 0.85204 0.85757 0.75156 0.94833 0.91875 0.89872 0.91237 0.87479 0.95173 0.90405 0.94234 0.80093 0.94554 0.85843 0.84383 0.84642 0.84497 0.85823 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.31 9.50 71.98 0.68 -4.62 16 2 C 0.13 3.11 5.92 86.38 0.51 3.62 16 3 N -0.61 -15.40 2.16 -701.60 -1.51 -16.92 16 4 C 0.11 2.32 5.68 85.63 0.49 2.81 16 5 C 0.48 14.69 7.77 87.66 0.68 15.38 16 6 O -0.57 -24.12 13.69 -3.04 -0.04 -24.16 16 7 N -0.71 -18.40 4.45 -442.54 -1.97 -20.36 16 8 C 0.15 4.75 2.52 44.99 0.11 4.86 16 9 H 0.04 1.82 7.05 -2.39 -0.02 1.80 16 10 C -0.15 -3.97 9.48 71.98 0.68 -3.29 16 11 C -0.12 -3.24 4.29 30.59 0.13 -3.11 16 12 C 0.17 5.88 2.84 44.99 0.13 6.01 16 13 H 0.05 1.64 7.56 -2.39 -0.02 1.62 16 14 C -0.16 -5.00 9.49 71.98 0.68 -4.31 16 15 N -0.73 -36.03 4.49 -322.95 -1.45 -37.48 16 16 C -0.22 -12.37 9.93 84.03 0.83 -11.54 16 17 H 0.07 3.78 7.83 -2.91 -0.02 3.76 16 18 C -0.08 -4.58 5.50 84.86 0.47 -4.12 16 19 N -0.97 -61.61 13.06 21.65 0.28 -61.33 16 20 Si 0.96 47.64 29.55 68.60 2.03 49.67 16 21 H -0.28 -13.01 7.11 99.48 0.71 -12.30 16 22 H -0.30 -15.27 7.11 99.48 0.71 -14.56 16 23 H -0.28 -13.54 7.11 99.48 0.71 -12.83 16 24 C 0.21 5.51 6.55 38.21 0.25 5.76 16 25 C -0.21 -5.03 9.20 22.40 0.21 -4.83 16 26 C -0.08 -1.70 10.04 22.25 0.22 -1.48 16 27 C -0.19 -3.92 10.04 22.29 0.22 -3.69 16 28 C -0.08 -1.77 10.04 22.25 0.22 -1.55 16 29 C -0.21 -5.27 9.21 22.40 0.21 -5.07 16 30 H 0.04 1.35 8.14 -2.38 -0.02 1.33 16 31 H 0.06 1.89 8.14 -2.39 -0.02 1.87 16 32 H 0.03 1.34 6.39 -2.38 -0.02 1.32 16 33 H 0.09 1.91 6.20 -2.39 -0.01 1.89 16 34 H 0.09 1.88 7.89 -2.39 -0.02 1.86 16 35 H 0.13 1.99 6.21 -2.39 -0.01 1.97 16 36 H 0.12 2.13 7.89 -2.39 -0.02 2.11 16 37 H 0.41 7.25 8.60 -92.71 -0.80 6.45 16 38 H 0.03 1.04 8.14 -2.39 -0.02 1.02 16 39 H 0.06 1.66 8.14 -2.39 -0.02 1.64 16 40 H 0.08 1.66 8.14 -2.38 -0.02 1.64 16 41 H 0.07 2.03 8.14 -2.39 -0.02 2.01 16 42 H 0.11 2.03 8.14 -2.38 -0.02 2.01 16 43 H 0.03 1.07 8.14 -2.39 -0.02 1.05 16 44 H 0.08 1.82 8.14 -2.39 -0.02 1.80 16 45 H 0.04 1.30 8.14 -2.39 -0.02 1.28 16 46 H 0.37 20.11 7.80 -92.70 -0.72 19.39 16 47 H 0.25 15.37 8.31 -92.71 -0.77 14.60 16 48 H 0.12 2.61 6.15 -2.91 -0.02 2.59 16 49 H 0.14 2.20 8.06 -2.91 -0.02 2.17 16 50 H 0.14 2.09 8.06 -2.91 -0.02 2.06 16 51 H 0.14 2.27 8.06 -2.91 -0.02 2.25 16 52 H 0.12 2.85 6.14 -2.91 -0.02 2.83 16 Total: -1.00 -78.57 416.34 3.46 -75.11 By element: Atomic # 1 Polarization: 45.25 SS G_CDS: -0.61 Total: 44.64 kcal Atomic # 6 Polarization: -15.91 SS G_CDS: 6.74 Total: -9.17 kcal Atomic # 7 Polarization: -131.44 SS G_CDS: -4.65 Total: -136.09 kcal Atomic # 8 Polarization: -24.12 SS G_CDS: -0.04 Total: -24.16 kcal Atomic # 14 Polarization: 47.64 SS G_CDS: 2.03 Total: 49.67 kcal Total: -78.57 3.46 -75.11 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001146544656.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.995 kcal (2) G-P(sol) polarization free energy of solvation -78.571 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.576 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.459 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.112 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.117 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds