Wall clock time and date at job start Tue Mar 31 2020 18:31:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46495 * 109.47311 * 2 1 4 4 C 1.46503 * 120.00034 * 90.00305 * 3 2 1 5 5 C 1.50698 * 109.47024 * 269.99929 * 4 3 2 6 6 O 1.21284 * 120.00180 * 0.02562 * 5 4 3 7 7 N 1.34778 * 120.00047 * 179.97438 * 5 4 3 8 8 C 1.46494 * 119.99979 * 179.97438 * 7 5 4 9 9 H 1.09002 * 109.47123 * 35.00778 * 8 7 5 10 10 C 1.53002 * 109.47520 * 275.00457 * 8 7 5 11 11 C 1.53003 * 109.47333 * 155.00547 * 8 7 5 12 12 C 1.53004 * 109.46807 * 295.00361 * 11 8 7 13 13 H 1.08995 * 109.47216 * 304.99653 * 12 11 8 14 14 C 1.52999 * 109.47083 * 184.99648 * 12 11 8 15 15 N 1.46498 * 109.47065 * 64.99542 * 12 11 8 16 16 C 1.36943 * 119.99752 * 204.72207 * 15 12 11 17 17 H 1.08002 * 119.99793 * 0.27665 * 16 15 12 18 18 C 1.38811 * 120.00012 * 180.27737 * 16 15 12 19 19 N 1.31624 * 119.99698 * 0.02562 * 18 16 15 20 20 Si 1.86795 * 120.00072 * 180.02562 * 18 16 15 21 21 H 1.48495 * 109.47159 * 0.02562 * 20 18 16 22 22 H 1.48505 * 109.47290 * 120.00044 * 20 18 16 23 23 H 1.48503 * 109.47163 * 240.00049 * 20 18 16 24 24 C 1.39670 * 120.00214 * 269.99994 * 3 2 1 25 25 C 1.38914 * 120.07769 * 179.72282 * 24 3 2 26 26 C 1.38098 * 119.92655 * 179.76978 * 25 24 3 27 27 C 1.38290 * 120.07249 * 0.51124 * 26 25 24 28 28 C 1.38288 * 120.15218 * 359.74016 * 27 26 25 29 29 C 1.38107 * 120.07118 * 0.02562 * 28 27 26 30 30 H 1.09000 * 109.46423 * 299.99810 * 1 2 3 31 31 H 1.08995 * 109.46694 * 59.99595 * 1 2 3 32 32 H 1.08995 * 109.47037 * 180.02562 * 1 2 3 33 33 H 1.09000 * 109.46850 * 239.99545 * 2 1 3 34 34 H 1.09009 * 109.46865 * 120.00578 * 2 1 3 35 35 H 1.08998 * 109.47484 * 149.99801 * 4 3 2 36 36 H 1.09004 * 109.46743 * 29.99811 * 4 3 2 37 37 H 0.96999 * 119.99718 * 0.02562 * 7 5 4 38 38 H 1.09002 * 109.47185 * 300.00284 * 10 8 7 39 39 H 1.09004 * 109.46882 * 60.00056 * 10 8 7 40 40 H 1.09000 * 109.47436 * 180.02562 * 10 8 7 41 41 H 1.08993 * 109.47316 * 175.00453 * 11 8 7 42 42 H 1.08998 * 109.46869 * 54.99922 * 11 8 7 43 43 H 1.08996 * 109.47245 * 179.97438 * 14 12 11 44 44 H 1.08995 * 109.47098 * 300.00077 * 14 12 11 45 45 H 1.09003 * 109.47054 * 59.99725 * 14 12 11 46 46 H 0.97001 * 120.00384 * 25.00562 * 15 12 11 47 47 H 0.96999 * 119.99739 * 180.02562 * 19 18 16 48 48 H 1.08003 * 120.03185 * 0.02562 * 25 24 3 49 49 H 1.07998 * 119.96900 * 180.25824 * 26 25 24 50 50 H 1.08000 * 119.92320 * 179.72631 * 27 26 25 51 51 H 1.08000 * 119.96066 * 179.97438 * 28 27 26 52 52 H 1.08004 * 120.03347 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.2627 2.0717 1.2687 5 6 1.0069 2.7822 1.7038 6 8 0.0062 2.7176 1.0216 7 7 0.9954 3.4885 2.8516 8 6 -0.2251 4.1796 3.2743 9 1 -1.0951 3.5895 2.9861 10 6 -0.2937 5.5517 2.6008 11 6 -0.2104 4.3576 4.7938 12 6 -0.2677 2.9856 5.4686 13 1 -1.1361 2.4372 5.1037 14 6 -0.3785 3.1666 6.9838 15 7 0.9509 2.2355 5.1542 16 6 0.9408 0.8666 5.1904 17 1 0.0333 0.3399 5.4464 18 6 2.0969 0.1561 4.8982 19 7 3.2029 0.7981 4.5868 20 14 2.0829 -1.7112 4.9469 21 1 0.7267 -2.1865 5.3206 22 1 2.4422 -2.2440 3.6081 23 1 3.0688 -2.1876 5.9501 24 6 2.2512 2.0396 -1.2096 25 6 2.7088 3.3512 -1.2114 26 6 2.9425 3.9977 -2.4091 27 6 2.7114 3.3443 -3.6058 28 6 2.2509 2.0404 -3.6077 29 6 2.0198 1.3864 -2.4135 30 1 -0.3632 0.5138 0.8900 31 1 -0.3632 0.5139 -0.8899 32 1 -0.3633 -1.0276 0.0005 33 1 1.8933 -0.5139 -0.8900 34 1 1.8934 -0.5140 0.8900 35 1 3.0646 2.7984 1.1385 36 1 2.5507 1.3450 2.0284 37 1 1.7956 3.5398 3.3975 38 1 0.5763 6.1418 2.8890 39 1 -0.3043 5.4249 1.5182 40 1 -1.2017 6.0661 2.9156 41 1 -1.0738 4.9488 5.0988 42 1 0.7044 4.8705 5.0907 43 1 -0.4198 2.1892 7.4644 44 1 0.4899 3.7150 7.3487 45 1 -1.2852 3.7247 7.2176 46 1 1.7659 2.7086 4.9244 47 1 4.0107 0.3015 4.3822 48 1 2.8856 3.8633 -0.2771 49 1 3.3023 5.0160 -2.4113 50 1 2.8908 3.8537 -4.5411 51 1 2.0711 1.5332 -4.5441 52 1 1.6597 0.3681 -2.4156 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001146544657.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:31:05 Heat of formation + Delta-G solvation = 8.926282 kcal Electronic energy + Delta-G solvation = -30825.100060 eV Core-core repulsion = 27018.011066 eV Total energy + Delta-G solvation = -3807.088994 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 333.216 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -39.79823 -38.78708 -36.93372 -35.78151 -34.10688 -32.35486 -31.60054 -30.70659 -30.37125 -29.21088 -28.51366 -26.39285 -26.05529 -23.72358 -23.08936 -22.10802 -21.27877 -20.24512 -20.17863 -19.38265 -17.50909 -17.23687 -16.57465 -16.01218 -15.40388 -15.18248 -14.78455 -14.65205 -14.13406 -13.95499 -13.84581 -13.60353 -13.39535 -13.30491 -13.03265 -12.81098 -12.69509 -12.52455 -12.24417 -12.16282 -11.90208 -11.79718 -11.68843 -11.61434 -11.33597 -11.12089 -10.96458 -10.91980 -10.77296 -10.71796 -10.37865 -10.31890 -10.26579 -9.93253 -9.84208 -9.74452 -9.02724 -9.01332 -8.67276 -8.29324 -7.02320 -6.94818 -5.88506 -3.14026 1.69396 1.89532 3.29279 3.34201 3.40195 3.43301 3.44185 4.00186 4.20272 4.51459 5.05533 5.09210 5.15683 5.27193 5.37175 5.42696 5.44002 5.50338 5.56289 5.59563 5.67638 5.67990 5.75134 5.77698 5.83621 5.88054 5.97347 5.97854 6.00537 6.11785 6.13995 6.20499 6.22718 6.24260 6.36259 6.37696 6.41176 6.54671 6.57903 6.59087 6.71768 6.81698 6.83323 6.86513 7.02702 7.13590 7.24321 7.55066 7.63481 7.84345 8.25489 8.32577 8.99680 9.42969 9.97645 10.33703 11.33974 Molecular weight = 333.22amu Principal moments of inertia in cm(-1) A = 0.010945 B = 0.004639 C = 0.003625 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2557.555562 B = 6033.814482 C = 7722.804603 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.122 3.878 3 N -0.599 5.599 4 C 0.099 3.901 5 C 0.507 3.493 6 O -0.547 6.547 7 N -0.699 5.699 8 C 0.152 3.848 9 H 0.080 0.920 10 C -0.161 4.161 11 C -0.133 4.133 12 C 0.170 3.830 13 H 0.047 0.953 14 C -0.164 4.164 15 N -0.716 5.716 16 C -0.222 4.222 17 H 0.067 0.933 18 C -0.012 4.012 19 N -0.936 5.936 20 Si 0.896 3.104 21 H -0.283 1.283 22 H -0.292 1.292 23 H -0.293 1.293 24 C 0.237 3.763 25 C -0.198 4.198 26 C -0.073 4.073 27 C -0.193 4.193 28 C -0.075 4.075 29 C -0.201 4.201 30 H 0.073 0.927 31 H 0.053 0.947 32 H 0.050 0.950 33 H 0.069 0.931 34 H 0.076 0.924 35 H 0.092 0.908 36 H 0.130 0.870 37 H 0.403 0.597 38 H 0.052 0.948 39 H 0.056 0.944 40 H 0.057 0.943 41 H 0.072 0.928 42 H 0.063 0.937 43 H 0.052 0.948 44 H 0.045 0.955 45 H 0.035 0.965 46 H 0.378 0.622 47 H 0.253 0.747 48 H 0.116 0.884 49 H 0.114 0.886 50 H 0.111 0.889 51 H 0.114 0.886 52 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.631 6.564 -8.708 11.026 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.001 4.001 3 N -0.306 5.306 4 C -0.027 4.027 5 C 0.292 3.708 6 O -0.425 6.425 7 N -0.352 5.352 8 C 0.047 3.953 9 H 0.098 0.902 10 C -0.220 4.220 11 C -0.172 4.172 12 C 0.060 3.940 13 H 0.065 0.935 14 C -0.224 4.224 15 N -0.359 5.359 16 C -0.353 4.353 17 H 0.085 0.915 18 C -0.207 4.207 19 N -0.586 5.586 20 Si 0.728 3.272 21 H -0.208 1.208 22 H -0.219 1.219 23 H -0.221 1.221 24 C 0.133 3.867 25 C -0.220 4.220 26 C -0.092 4.092 27 C -0.213 4.213 28 C -0.094 4.094 29 C -0.223 4.223 30 H 0.092 0.908 31 H 0.072 0.928 32 H 0.069 0.931 33 H 0.087 0.913 34 H 0.094 0.906 35 H 0.110 0.890 36 H 0.148 0.852 37 H 0.240 0.760 38 H 0.071 0.929 39 H 0.075 0.925 40 H 0.076 0.924 41 H 0.090 0.910 42 H 0.082 0.918 43 H 0.071 0.929 44 H 0.064 0.936 45 H 0.054 0.946 46 H 0.213 0.787 47 H 0.063 0.937 48 H 0.134 0.866 49 H 0.133 0.867 50 H 0.129 0.871 51 H 0.132 0.868 52 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -2.426 6.213 -8.991 11.194 hybrid contribution 0.625 -0.921 0.515 1.226 sum -1.801 5.292 -8.476 10.153 Atomic orbital electron populations 1.22182 0.95810 1.00567 1.03764 1.21430 0.94755 0.81736 1.02181 1.46231 1.69743 1.12646 1.01979 1.21467 0.95131 0.99085 0.87065 1.21086 0.90722 0.78241 0.80792 1.90614 1.35273 1.62046 1.54606 1.45976 1.14640 1.51185 1.23437 1.20735 0.89082 0.92136 0.93356 0.90201 1.22197 1.01268 0.97178 1.01320 1.22197 1.02080 0.98873 0.94022 1.20272 0.91451 0.90345 0.91900 0.93526 1.22422 0.99293 1.00970 0.99711 1.42471 1.07793 1.03204 1.82432 1.19267 0.95680 0.82681 1.37672 0.91492 1.24552 0.95840 0.97179 1.03108 1.69599 1.00461 1.33761 1.54766 0.86270 0.77168 0.86509 0.77236 1.20833 1.21932 1.22056 1.17836 0.91729 0.91233 0.85854 1.20639 1.08681 0.94249 0.98445 1.20800 0.97490 0.98808 0.92077 1.20767 1.07245 0.95858 0.97458 1.20800 0.97093 0.94580 0.96901 1.20646 1.09690 1.00864 0.91144 0.90823 0.92819 0.93116 0.91271 0.90552 0.88990 0.85180 0.75969 0.92919 0.92484 0.92357 0.90992 0.91788 0.92914 0.93594 0.94606 0.78688 0.93656 0.86583 0.86748 0.87096 0.86783 0.86298 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.75 9.50 37.16 0.35 -2.40 16 2 C 0.12 1.97 5.92 -4.04 -0.02 1.95 16 3 N -0.60 -10.14 2.16 -173.12 -0.37 -10.51 16 4 C 0.10 1.75 5.68 -5.19 -0.03 1.72 16 5 C 0.51 9.45 7.77 -10.99 -0.09 9.36 16 6 O -0.55 -11.51 13.68 5.55 0.08 -11.44 16 7 N -0.70 -11.91 3.80 -53.81 -0.20 -12.11 16 8 C 0.15 2.39 2.57 -67.93 -0.17 2.21 16 9 H 0.08 1.45 7.58 -51.93 -0.39 1.06 16 10 C -0.16 -2.17 9.48 37.16 0.35 -1.82 16 11 C -0.13 -1.94 4.43 -26.73 -0.12 -2.06 16 12 C 0.17 3.05 2.89 -67.93 -0.20 2.85 16 13 H 0.05 0.91 8.08 -51.93 -0.42 0.49 16 14 C -0.16 -2.74 9.49 37.16 0.35 -2.38 16 15 N -0.72 -15.33 3.84 -53.43 -0.21 -15.53 16 16 C -0.22 -5.49 9.93 -15.06 -0.15 -5.64 16 17 H 0.07 1.71 7.83 -52.49 -0.41 1.30 16 18 C -0.01 -0.30 5.50 -17.43 -0.10 -0.39 16 19 N -0.94 -23.86 12.83 55.49 0.71 -23.15 16 20 Si 0.90 20.92 29.55 -169.99 -5.02 15.90 16 21 H -0.28 -6.63 7.11 56.52 0.40 -6.22 16 22 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 23 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 24 C 0.24 3.87 6.55 -83.79 -0.55 3.32 16 25 C -0.20 -3.06 9.20 -39.38 -0.36 -3.42 16 26 C -0.07 -0.99 10.04 -39.61 -0.40 -1.39 16 27 C -0.19 -2.50 10.04 -39.54 -0.40 -2.90 16 28 C -0.07 -0.99 10.04 -39.61 -0.40 -1.39 16 29 C -0.20 -2.98 9.21 -39.38 -0.36 -3.35 16 30 H 0.07 1.46 6.39 -51.93 -0.33 1.13 16 31 H 0.05 0.91 8.14 -51.93 -0.42 0.48 16 32 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 33 H 0.07 0.97 6.20 -51.93 -0.32 0.65 16 34 H 0.08 1.32 7.89 -51.92 -0.41 0.91 16 35 H 0.09 1.46 6.21 -51.93 -0.32 1.14 16 36 H 0.13 2.61 7.66 -51.93 -0.40 2.21 16 37 H 0.40 6.95 6.51 -40.82 -0.27 6.69 16 38 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 39 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 40 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 41 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 42 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 43 H 0.05 0.97 8.14 -51.93 -0.42 0.54 16 44 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 45 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 46 H 0.38 8.28 5.71 -40.82 -0.23 8.04 16 47 H 0.25 6.46 8.31 -40.82 -0.34 6.12 16 48 H 0.12 1.75 6.15 -52.48 -0.32 1.42 16 49 H 0.11 1.29 8.06 -52.49 -0.42 0.86 16 50 H 0.11 1.17 8.06 -52.49 -0.42 0.75 16 51 H 0.11 1.21 8.06 -52.49 -0.42 0.79 16 52 H 0.12 1.63 6.14 -52.48 -0.32 1.31 16 LS Contribution 411.69 15.07 6.20 6.20 Total: -1.00 -27.27 411.69 -9.88 -37.15 By element: Atomic # 1 Polarization: 28.01 SS G_CDS: -8.78 Total: 19.22 kcal Atomic # 6 Polarization: -3.45 SS G_CDS: -2.28 Total: -5.74 kcal Atomic # 7 Polarization: -61.23 SS G_CDS: -0.07 Total: -61.30 kcal Atomic # 8 Polarization: -11.51 SS G_CDS: 0.08 Total: -11.44 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -5.02 Total: 15.90 kcal Total LS contribution 6.20 Total: 6.20 kcal Total: -27.27 -9.88 -37.15 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001146544657.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.074 kcal (2) G-P(sol) polarization free energy of solvation -27.268 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.807 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.880 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.148 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.926 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds