Wall clock time and date at job start Tue Mar 31 2020 18:31:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46495 * 109.47311 * 2 1 4 4 C 1.46503 * 120.00034 * 90.00305 * 3 2 1 5 5 C 1.50698 * 109.47024 * 269.99929 * 4 3 2 6 6 O 1.21284 * 120.00180 * 0.02562 * 5 4 3 7 7 N 1.34778 * 120.00047 * 179.97438 * 5 4 3 8 8 C 1.46494 * 119.99979 * 179.97438 * 7 5 4 9 9 H 1.09002 * 109.47123 * 35.00778 * 8 7 5 10 10 C 1.53002 * 109.47520 * 275.00457 * 8 7 5 11 11 C 1.53003 * 109.47333 * 155.00547 * 8 7 5 12 12 C 1.53004 * 109.46807 * 295.00361 * 11 8 7 13 13 H 1.08995 * 109.47216 * 304.99653 * 12 11 8 14 14 C 1.52999 * 109.47083 * 184.99648 * 12 11 8 15 15 N 1.46498 * 109.47065 * 64.99542 * 12 11 8 16 16 C 1.36943 * 119.99752 * 204.72207 * 15 12 11 17 17 H 1.08002 * 119.99793 * 0.27665 * 16 15 12 18 18 C 1.38811 * 120.00012 * 180.27737 * 16 15 12 19 19 N 1.31624 * 119.99698 * 0.02562 * 18 16 15 20 20 Si 1.86795 * 120.00072 * 180.02562 * 18 16 15 21 21 H 1.48495 * 109.47159 * 0.02562 * 20 18 16 22 22 H 1.48505 * 109.47290 * 120.00044 * 20 18 16 23 23 H 1.48503 * 109.47163 * 240.00049 * 20 18 16 24 24 C 1.39670 * 120.00214 * 269.99994 * 3 2 1 25 25 C 1.38914 * 120.07769 * 179.72282 * 24 3 2 26 26 C 1.38098 * 119.92655 * 179.76978 * 25 24 3 27 27 C 1.38290 * 120.07249 * 0.51124 * 26 25 24 28 28 C 1.38288 * 120.15218 * 359.74016 * 27 26 25 29 29 C 1.38107 * 120.07118 * 0.02562 * 28 27 26 30 30 H 1.09000 * 109.46423 * 299.99810 * 1 2 3 31 31 H 1.08995 * 109.46694 * 59.99595 * 1 2 3 32 32 H 1.08995 * 109.47037 * 180.02562 * 1 2 3 33 33 H 1.09000 * 109.46850 * 239.99545 * 2 1 3 34 34 H 1.09009 * 109.46865 * 120.00578 * 2 1 3 35 35 H 1.08998 * 109.47484 * 149.99801 * 4 3 2 36 36 H 1.09004 * 109.46743 * 29.99811 * 4 3 2 37 37 H 0.96999 * 119.99718 * 0.02562 * 7 5 4 38 38 H 1.09002 * 109.47185 * 300.00284 * 10 8 7 39 39 H 1.09004 * 109.46882 * 60.00056 * 10 8 7 40 40 H 1.09000 * 109.47436 * 180.02562 * 10 8 7 41 41 H 1.08993 * 109.47316 * 175.00453 * 11 8 7 42 42 H 1.08998 * 109.46869 * 54.99922 * 11 8 7 43 43 H 1.08996 * 109.47245 * 179.97438 * 14 12 11 44 44 H 1.08995 * 109.47098 * 300.00077 * 14 12 11 45 45 H 1.09003 * 109.47054 * 59.99725 * 14 12 11 46 46 H 0.97001 * 120.00384 * 25.00562 * 15 12 11 47 47 H 0.96999 * 119.99739 * 180.02562 * 19 18 16 48 48 H 1.08003 * 120.03185 * 0.02562 * 25 24 3 49 49 H 1.07998 * 119.96900 * 180.25824 * 26 25 24 50 50 H 1.08000 * 119.92320 * 179.72631 * 27 26 25 51 51 H 1.08000 * 119.96066 * 179.97438 * 28 27 26 52 52 H 1.08004 * 120.03347 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.2627 2.0717 1.2687 5 6 1.0069 2.7822 1.7038 6 8 0.0062 2.7176 1.0216 7 7 0.9954 3.4885 2.8516 8 6 -0.2251 4.1796 3.2743 9 1 -1.0951 3.5895 2.9861 10 6 -0.2937 5.5517 2.6008 11 6 -0.2104 4.3576 4.7938 12 6 -0.2677 2.9856 5.4686 13 1 -1.1361 2.4372 5.1037 14 6 -0.3785 3.1666 6.9838 15 7 0.9509 2.2355 5.1542 16 6 0.9408 0.8666 5.1904 17 1 0.0333 0.3399 5.4464 18 6 2.0969 0.1561 4.8982 19 7 3.2029 0.7981 4.5868 20 14 2.0829 -1.7112 4.9469 21 1 0.7267 -2.1865 5.3206 22 1 2.4422 -2.2440 3.6081 23 1 3.0688 -2.1876 5.9501 24 6 2.2512 2.0396 -1.2096 25 6 2.7088 3.3512 -1.2114 26 6 2.9425 3.9977 -2.4091 27 6 2.7114 3.3443 -3.6058 28 6 2.2509 2.0404 -3.6077 29 6 2.0198 1.3864 -2.4135 30 1 -0.3632 0.5138 0.8900 31 1 -0.3632 0.5139 -0.8899 32 1 -0.3633 -1.0276 0.0005 33 1 1.8933 -0.5139 -0.8900 34 1 1.8934 -0.5140 0.8900 35 1 3.0646 2.7984 1.1385 36 1 2.5507 1.3450 2.0284 37 1 1.7956 3.5398 3.3975 38 1 0.5763 6.1418 2.8890 39 1 -0.3043 5.4249 1.5182 40 1 -1.2017 6.0661 2.9156 41 1 -1.0738 4.9488 5.0988 42 1 0.7044 4.8705 5.0907 43 1 -0.4198 2.1892 7.4644 44 1 0.4899 3.7150 7.3487 45 1 -1.2852 3.7247 7.2176 46 1 1.7659 2.7086 4.9244 47 1 4.0107 0.3015 4.3822 48 1 2.8856 3.8633 -0.2771 49 1 3.3023 5.0160 -2.4113 50 1 2.8908 3.8537 -4.5411 51 1 2.0711 1.5332 -4.5441 52 1 1.6597 0.3681 -2.4156 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001146544657.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:31:04 Heat of formation + Delta-G solvation = -3.610415 kcal Electronic energy + Delta-G solvation = -30825.643692 eV Core-core repulsion = 27018.011066 eV Total energy + Delta-G solvation = -3807.632626 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 333.216 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.11748 -40.04554 -38.34235 -37.08342 -35.67293 -34.03291 -32.91948 -32.08310 -31.50206 -30.58095 -30.01860 -27.64256 -27.35408 -25.56839 -24.31397 -23.28767 -22.53210 -21.66623 -21.45974 -20.78517 -19.09900 -18.68284 -17.99902 -17.38696 -16.72044 -16.55022 -16.25508 -15.94478 -15.56368 -15.45496 -15.32096 -15.02031 -14.60781 -14.57960 -14.37649 -14.18108 -14.07065 -13.76856 -13.58293 -13.46226 -13.32366 -13.21127 -12.96597 -12.90280 -12.80798 -12.61465 -12.54864 -12.28393 -12.16890 -12.11393 -11.98609 -11.71234 -11.59975 -11.53031 -11.39418 -11.12259 -10.87998 -10.40584 -9.75543 -9.73529 -8.81526 -8.17457 -7.85280 -5.07352 0.60870 0.79339 1.43797 1.49682 1.53481 1.90258 2.04600 2.59408 2.67811 3.09101 3.48214 3.79901 3.90653 3.94616 3.99878 4.15470 4.18933 4.20649 4.30699 4.37146 4.39254 4.42953 4.53889 4.56114 4.57388 4.68593 4.70265 4.74295 4.81018 4.83088 4.87375 4.91343 4.93760 5.00632 5.08335 5.14163 5.15947 5.21121 5.35644 5.37874 5.42101 5.45604 5.60649 5.63575 5.66871 5.79740 5.87189 6.07878 6.29879 6.37467 6.63990 6.84024 7.46691 7.54686 8.18528 8.46810 9.35924 Molecular weight = 333.22amu Principal moments of inertia in cm(-1) A = 0.010945 B = 0.004639 C = 0.003625 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2557.555562 B = 6033.814482 C = 7722.804603 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.123 3.877 3 N -0.607 5.607 4 C 0.110 3.890 5 C 0.503 3.497 6 O -0.575 6.575 7 N -0.694 5.694 8 C 0.150 3.850 9 H 0.051 0.949 10 C -0.149 4.149 11 C -0.119 4.119 12 C 0.164 3.836 13 H 0.026 0.974 14 C -0.154 4.154 15 N -0.718 5.718 16 C -0.223 4.223 17 H 0.053 0.947 18 C -0.047 4.047 19 N -0.944 5.944 20 Si 0.936 3.064 21 H -0.285 1.285 22 H -0.294 1.294 23 H -0.299 1.299 24 C 0.211 3.789 25 C -0.216 4.216 26 C -0.078 4.078 27 C -0.191 4.191 28 C -0.077 4.077 29 C -0.213 4.213 30 H 0.036 0.964 31 H 0.049 0.951 32 H 0.069 0.931 33 H 0.094 0.906 34 H 0.059 0.941 35 H 0.105 0.895 36 H 0.104 0.896 37 H 0.403 0.597 38 H 0.068 0.932 39 H 0.035 0.965 40 H 0.081 0.919 41 H 0.104 0.896 42 H 0.076 0.924 43 H 0.028 0.972 44 H 0.048 0.952 45 H 0.067 0.933 46 H 0.376 0.624 47 H 0.249 0.751 48 H 0.111 0.889 49 H 0.138 0.862 50 H 0.140 0.860 51 H 0.143 0.857 52 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.699 8.184 -9.777 12.863 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.000 4.000 3 N -0.315 5.315 4 C -0.018 4.018 5 C 0.289 3.711 6 O -0.455 6.455 7 N -0.346 5.346 8 C 0.045 3.955 9 H 0.069 0.931 10 C -0.207 4.207 11 C -0.157 4.157 12 C 0.055 3.945 13 H 0.044 0.956 14 C -0.214 4.214 15 N -0.361 5.361 16 C -0.355 4.355 17 H 0.071 0.929 18 C -0.241 4.241 19 N -0.595 5.595 20 Si 0.769 3.231 21 H -0.211 1.211 22 H -0.221 1.221 23 H -0.227 1.227 24 C 0.110 3.890 25 C -0.239 4.239 26 C -0.096 4.096 27 C -0.211 4.211 28 C -0.095 4.095 29 C -0.235 4.235 30 H 0.055 0.945 31 H 0.068 0.932 32 H 0.088 0.912 33 H 0.112 0.888 34 H 0.077 0.923 35 H 0.123 0.877 36 H 0.122 0.878 37 H 0.240 0.760 38 H 0.087 0.913 39 H 0.054 0.946 40 H 0.100 0.900 41 H 0.123 0.877 42 H 0.095 0.905 43 H 0.047 0.953 44 H 0.067 0.933 45 H 0.086 0.914 46 H 0.211 0.789 47 H 0.058 0.942 48 H 0.129 0.871 49 H 0.156 0.844 50 H 0.158 0.842 51 H 0.161 0.839 52 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -2.511 7.862 -10.052 13.006 hybrid contribution 0.590 -1.385 0.805 1.707 sum -1.921 6.477 -9.246 11.452 Atomic orbital electron populations 1.22042 0.96309 1.01090 1.01589 1.21429 0.94234 0.81888 1.02465 1.46211 1.70476 1.12802 1.02001 1.21261 0.95026 0.98490 0.87016 1.21307 0.90662 0.78193 0.80962 1.90589 1.36200 1.63152 1.55552 1.46016 1.15082 1.50769 1.22778 1.20833 0.87314 0.92804 0.94514 0.93108 1.22077 1.03214 0.95833 0.99622 1.22107 1.04156 0.97013 0.92457 1.20452 0.89152 0.91615 0.93233 0.95575 1.22279 1.01025 1.00194 0.97922 1.42505 1.08919 1.02224 1.82471 1.19321 0.94977 0.84385 1.36831 0.92873 1.24916 0.96024 0.99190 1.03930 1.69663 1.00366 1.34019 1.55463 0.85638 0.76562 0.84244 0.76688 1.21059 1.22117 1.22705 1.18114 0.93052 0.91940 0.85940 1.20788 1.09558 0.94292 0.99220 1.21134 0.96916 0.99897 0.91675 1.21177 1.05714 0.95802 0.98357 1.21185 0.96049 0.94874 0.97398 1.20867 1.09933 1.01407 0.91298 0.94517 0.93203 0.91202 0.88822 0.92260 0.87743 0.87831 0.76018 0.91340 0.94594 0.89976 0.87734 0.90535 0.95262 0.93289 0.91414 0.78942 0.94194 0.87109 0.84443 0.84201 0.83937 0.85672 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.22 9.50 71.98 0.68 -4.54 16 2 C 0.12 4.08 5.92 86.38 0.51 4.59 16 3 N -0.61 -21.17 2.16 -701.62 -1.51 -22.69 16 4 C 0.11 4.03 5.68 85.63 0.49 4.51 16 5 C 0.50 19.52 7.77 87.66 0.68 20.20 16 6 O -0.57 -25.21 13.68 -3.04 -0.04 -25.25 16 7 N -0.69 -24.07 3.80 -442.53 -1.68 -25.75 16 8 C 0.15 4.63 2.57 44.99 0.12 4.75 16 9 H 0.05 1.88 7.58 -2.39 -0.02 1.86 16 10 C -0.15 -3.77 9.48 71.98 0.68 -3.09 16 11 C -0.12 -3.23 4.43 30.60 0.14 -3.09 16 12 C 0.16 5.79 2.89 44.99 0.13 5.92 16 13 H 0.03 1.03 8.08 -2.39 -0.02 1.01 16 14 C -0.15 -4.92 9.49 71.98 0.68 -4.23 16 15 N -0.72 -31.09 3.84 -322.94 -1.24 -32.33 16 16 C -0.22 -11.29 9.93 84.03 0.83 -10.46 16 17 H 0.05 2.81 7.83 -2.91 -0.02 2.78 16 18 C -0.05 -2.42 5.50 84.86 0.47 -1.95 16 19 N -0.94 -49.04 12.83 21.65 0.28 -48.76 16 20 Si 0.94 43.86 29.55 68.60 2.03 45.89 16 21 H -0.29 -13.31 7.11 99.48 0.71 -12.61 16 22 H -0.29 -13.75 7.11 99.48 0.71 -13.04 16 23 H -0.30 -14.25 7.11 99.48 0.71 -13.54 16 24 C 0.21 6.91 6.55 38.22 0.25 7.16 16 25 C -0.22 -6.63 9.20 22.40 0.21 -6.43 16 26 C -0.08 -1.98 10.04 22.25 0.22 -1.75 16 27 C -0.19 -4.40 10.04 22.29 0.22 -4.17 16 28 C -0.08 -1.84 10.04 22.25 0.22 -1.61 16 29 C -0.21 -6.10 9.21 22.40 0.21 -5.89 16 30 H 0.04 1.52 6.39 -2.39 -0.02 1.51 16 31 H 0.05 1.72 8.14 -2.39 -0.02 1.70 16 32 H 0.07 2.06 8.14 -2.39 -0.02 2.04 16 33 H 0.09 2.60 6.20 -2.39 -0.01 2.59 16 34 H 0.06 2.14 7.89 -2.38 -0.02 2.12 16 35 H 0.10 3.46 6.21 -2.39 -0.01 3.44 16 36 H 0.10 4.39 7.66 -2.38 -0.02 4.37 16 37 H 0.40 14.06 6.51 -92.71 -0.60 13.45 16 38 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 39 H 0.03 1.06 8.14 -2.39 -0.02 1.04 16 40 H 0.08 1.69 8.14 -2.39 -0.02 1.67 16 41 H 0.10 2.22 8.14 -2.39 -0.02 2.20 16 42 H 0.08 1.95 8.14 -2.39 -0.02 1.93 16 43 H 0.03 1.04 8.14 -2.39 -0.02 1.02 16 44 H 0.05 1.53 8.14 -2.39 -0.02 1.51 16 45 H 0.07 1.72 8.14 -2.39 -0.02 1.70 16 46 H 0.38 16.56 5.71 -92.71 -0.53 16.03 16 47 H 0.25 12.91 8.31 -92.71 -0.77 12.14 16 48 H 0.11 3.39 6.15 -2.91 -0.02 3.37 16 49 H 0.14 2.76 8.06 -2.91 -0.02 2.73 16 50 H 0.14 2.40 8.06 -2.91 -0.02 2.37 16 51 H 0.14 2.54 8.06 -2.91 -0.02 2.52 16 52 H 0.13 3.30 6.14 -2.91 -0.02 3.29 16 Total: -1.00 -60.62 411.69 4.35 -56.28 By element: Atomic # 1 Polarization: 52.94 SS G_CDS: -0.23 Total: 52.71 kcal Atomic # 6 Polarization: -6.84 SS G_CDS: 6.74 Total: -0.09 kcal Atomic # 7 Polarization: -125.37 SS G_CDS: -4.16 Total: -129.53 kcal Atomic # 8 Polarization: -25.21 SS G_CDS: -0.04 Total: -25.25 kcal Atomic # 14 Polarization: 43.86 SS G_CDS: 2.03 Total: 45.89 kcal Total: -60.62 4.35 -56.28 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001146544657.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.667 kcal (2) G-P(sol) polarization free energy of solvation -60.622 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.956 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.345 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.277 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.610 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds