Wall clock time and date at job start Tue Mar 31 2020 17:18:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08994 * 109.47678 * 2 1 4 4 C 1.53002 * 109.47189 * 239.99487 * 2 1 3 5 5 C 1.53003 * 109.47269 * 175.00147 * 4 2 1 6 6 H 1.09000 * 109.46953 * 305.00936 * 5 4 2 7 7 C 1.52996 * 109.47332 * 185.00423 * 5 4 2 8 8 N 1.46505 * 109.46807 * 65.00478 * 5 4 2 9 9 C 1.36931 * 119.99788 * 205.00000 * 8 5 4 10 10 H 1.08002 * 120.00438 * 0.02562 * 9 8 5 11 11 C 1.38817 * 119.99680 * 179.72358 * 9 8 5 12 12 N 1.31614 * 119.99888 * 0.27479 * 11 9 8 13 13 Si 1.86803 * 119.99862 * 180.27671 * 11 9 8 14 14 H 1.48498 * 109.47174 * 90.00121 * 13 11 9 15 15 H 1.48501 * 109.47062 * 210.00072 * 13 11 9 16 16 H 1.48504 * 109.46913 * 329.99871 * 13 11 9 17 17 N 1.46508 * 109.46657 * 120.00295 * 2 1 3 18 18 C 1.34771 * 119.99837 * 274.99636 * 17 2 1 19 19 O 1.21555 * 120.00130 * 0.02562 * 18 17 2 20 20 C 1.47849 * 120.00132 * 180.02562 * 18 17 2 21 21 C 1.39593 * 120.14031 * 359.72232 * 20 18 17 22 22 C 1.37938 * 119.84696 * 179.75101 * 21 20 18 23 23 C 1.38377 * 120.14762 * 0.52482 * 22 21 20 24 24 C 1.38343 * 120.29326 * 359.75116 * 23 22 21 25 25 C 1.50696 * 119.92715 * 179.97438 * 24 23 22 26 26 N 1.46895 * 109.47459 * 269.97529 * 25 24 23 27 27 C 1.46897 * 111.00444 * 170.00178 * 26 25 24 28 28 C 1.46900 * 111.00173 * 293.95815 * 26 25 24 29 29 C 1.37973 * 120.14327 * 359.97065 * 24 23 22 30 30 H 1.08998 * 109.47359 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.46944 * 300.00322 * 1 2 3 32 32 H 1.09010 * 109.46692 * 59.99697 * 1 2 3 33 33 H 1.09000 * 109.46766 * 55.00662 * 4 2 1 34 34 H 1.08992 * 109.47398 * 295.00756 * 4 2 1 35 35 H 1.08998 * 109.47019 * 59.99816 * 7 5 4 36 36 H 1.08998 * 109.47099 * 180.02562 * 7 5 4 37 37 H 1.09002 * 109.46807 * 300.00318 * 7 5 4 38 38 H 0.97000 * 119.99792 * 24.99795 * 8 5 4 39 39 H 0.97005 * 119.99715 * 179.97438 * 12 11 9 40 40 H 0.96999 * 120.00119 * 94.99915 * 17 2 1 41 41 H 1.07994 * 120.07566 * 0.02562 * 21 20 18 42 42 H 1.07998 * 119.92700 * 180.28020 * 22 21 20 43 43 H 1.08003 * 119.85510 * 179.76597 * 23 22 21 44 44 H 1.09007 * 109.47534 * 29.97821 * 25 24 23 45 45 H 1.09008 * 109.46967 * 149.97556 * 25 24 23 46 46 H 1.09002 * 109.47101 * 59.99614 * 27 26 25 47 47 H 1.09003 * 109.47337 * 180.02562 * 27 26 25 48 48 H 1.09009 * 109.46863 * 300.00488 * 27 26 25 49 49 H 1.08999 * 109.47103 * 59.99333 * 28 26 25 50 50 H 1.09001 * 109.47520 * 179.97438 * 28 26 25 51 51 H 1.08997 * 109.46841 * 299.99835 * 28 26 25 52 52 H 1.08001 * 120.07557 * 180.02562 * 29 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7214 -1.2492 5 6 3.5649 -0.6135 -1.3136 6 1 3.8571 0.4356 -1.2677 7 6 4.0645 -1.2252 -2.6239 8 7 4.1536 -1.3344 -0.1823 9 6 5.3943 -0.9859 0.2807 10 1 5.9386 -0.1792 -0.1877 11 6 5.9497 -1.6652 1.3564 12 7 5.2861 -2.6479 1.9276 13 14 7.6389 -1.1846 1.9930 14 1 7.4946 -0.1451 3.0435 15 1 8.3096 -2.3787 2.5670 16 1 8.4552 -0.6482 0.8744 17 7 2.0182 -0.6907 1.1962 18 6 2.1470 -0.0184 2.3572 19 8 1.8575 1.1609 2.4119 20 6 2.6402 -0.7153 3.5642 21 6 2.9679 -2.0709 3.5062 22 6 3.4325 -2.7138 4.6348 23 6 3.5635 -2.0206 5.8252 24 6 3.2350 -0.6783 5.8909 25 6 3.3803 0.0684 7.1917 26 7 2.1267 -0.0232 7.9517 27 6 2.3014 0.4849 9.3189 28 6 1.0398 0.6845 7.2620 29 6 2.7746 -0.0219 4.7680 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8900 32 1 -0.3633 0.5139 -0.8901 33 1 1.6055 -0.2618 -2.1369 34 1 1.7516 -1.7715 -1.2056 35 1 3.6264 -0.6888 -3.4656 36 1 5.1509 -1.1487 -2.6696 37 1 3.7722 -2.2743 -2.6698 38 1 3.6646 -2.0586 0.2387 39 1 5.6745 -3.1228 2.6790 40 1 2.2489 -1.6319 1.1527 41 1 2.8623 -2.6141 2.5788 42 1 3.6907 -3.7615 4.5902 43 1 3.9241 -2.5296 6.7069 44 1 4.1910 -0.3699 7.7738 45 1 3.6052 1.1152 6.9865 46 1 2.6119 1.5291 9.2815 47 1 1.3583 0.4050 9.8596 48 1 3.0640 -0.1027 9.8302 49 1 0.8852 0.2421 6.2779 50 1 0.1233 0.6005 7.8459 51 1 1.3046 1.7359 7.1500 52 1 2.5189 1.0260 4.8204 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001146581911.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:18:24 Heat of formation + Delta-G solvation = 6.240981 kcal Electronic energy + Delta-G solvation = -30471.801119 eV Core-core repulsion = 26664.595682 eV Total energy + Delta-G solvation = -3807.205437 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 333.216 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -39.72267 -38.51069 -36.90939 -36.42831 -34.13406 -32.45842 -31.49487 -30.71450 -29.93097 -28.49974 -27.55217 -26.47178 -26.31150 -23.65686 -23.55011 -22.28076 -21.06357 -20.65089 -20.17990 -19.26244 -17.19079 -16.95528 -15.97795 -15.47564 -15.40330 -15.21905 -14.92782 -14.83125 -14.32008 -14.02388 -13.87230 -13.72411 -13.48616 -13.11519 -12.91091 -12.71103 -12.47399 -12.28874 -12.14495 -12.05917 -11.93203 -11.74285 -11.67219 -11.63679 -11.61912 -11.40789 -11.00249 -10.96710 -10.81651 -10.73206 -10.43998 -10.31593 -10.24069 -9.90020 -9.67262 -9.17187 -8.96051 -8.45232 -8.41050 -8.17950 -8.06746 -6.91528 -5.80754 -3.03475 1.57115 1.98310 3.43685 3.48952 3.51425 3.55198 3.89673 4.08542 4.59871 4.63939 4.98860 5.09219 5.12378 5.23275 5.33875 5.40303 5.46320 5.49665 5.52960 5.56388 5.58380 5.69103 5.69917 5.70882 5.74453 5.76953 5.89144 5.98962 6.00553 6.03081 6.06414 6.13637 6.18044 6.25176 6.37568 6.39680 6.48442 6.55786 6.58734 6.61053 6.85766 6.92064 7.00354 7.03793 7.06065 7.09677 7.15412 7.23278 7.53839 7.71062 8.27564 8.39713 8.98711 9.51387 10.03515 10.39718 11.41577 Molecular weight = 333.22amu Principal moments of inertia in cm(-1) A = 0.011049 B = 0.004529 C = 0.003524 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2533.638216 B = 6180.240217 C = 7944.501610 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.150 3.850 3 H 0.082 0.918 4 C -0.134 4.134 5 C 0.169 3.831 6 H 0.047 0.953 7 C -0.163 4.163 8 N -0.715 5.715 9 C -0.227 4.227 10 H 0.065 0.935 11 C -0.005 4.005 12 N -0.924 5.924 13 Si 0.898 3.102 14 H -0.292 1.292 15 H -0.293 1.293 16 H -0.286 1.286 17 N -0.693 5.693 18 C 0.572 3.428 19 O -0.567 6.567 20 C -0.137 4.137 21 C -0.013 4.013 22 C -0.124 4.124 23 C -0.080 4.080 24 C -0.113 4.113 25 C 0.100 3.900 26 N -0.542 5.542 27 C 0.024 3.976 28 C 0.021 3.979 29 C -0.058 4.058 30 H 0.053 0.947 31 H 0.057 0.943 32 H 0.059 0.941 33 H 0.073 0.927 34 H 0.063 0.937 35 H 0.035 0.965 36 H 0.052 0.948 37 H 0.045 0.955 38 H 0.376 0.624 39 H 0.255 0.745 40 H 0.403 0.597 41 H 0.135 0.865 42 H 0.121 0.879 43 H 0.114 0.886 44 H 0.079 0.921 45 H 0.040 0.960 46 H 0.023 0.977 47 H 0.066 0.934 48 H 0.066 0.934 49 H 0.076 0.924 50 H 0.064 0.936 51 H 0.024 0.976 52 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.160 1.257 5.524 10.771 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.045 3.955 3 H 0.100 0.900 4 C -0.172 4.172 5 C 0.059 3.941 6 H 0.065 0.935 7 C -0.223 4.223 8 N -0.358 5.358 9 C -0.358 4.358 10 H 0.083 0.917 11 C -0.201 4.201 12 N -0.573 5.573 13 Si 0.730 3.270 14 H -0.219 1.219 15 H -0.220 1.220 16 H -0.212 1.212 17 N -0.346 5.346 18 C 0.361 3.639 19 O -0.448 6.448 20 C -0.141 4.141 21 C -0.032 4.032 22 C -0.142 4.142 23 C -0.099 4.099 24 C -0.113 4.113 25 C -0.027 4.027 26 N -0.266 5.266 27 C -0.124 4.124 28 C -0.128 4.128 29 C -0.077 4.077 30 H 0.072 0.928 31 H 0.076 0.924 32 H 0.078 0.922 33 H 0.092 0.908 34 H 0.082 0.918 35 H 0.054 0.946 36 H 0.071 0.929 37 H 0.064 0.936 38 H 0.211 0.789 39 H 0.065 0.935 40 H 0.242 0.758 41 H 0.152 0.848 42 H 0.139 0.861 43 H 0.132 0.868 44 H 0.098 0.902 45 H 0.058 0.942 46 H 0.042 0.958 47 H 0.085 0.915 48 H 0.085 0.915 49 H 0.095 0.905 50 H 0.082 0.918 51 H 0.043 0.957 52 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -9.314 1.662 5.592 10.990 hybrid contribution 1.512 0.399 0.357 1.604 sum -7.802 2.060 5.949 10.025 Atomic orbital electron populations 1.22208 0.96332 1.01601 1.01901 1.20794 0.92455 0.97723 0.84544 0.89958 1.22214 0.97805 1.00579 0.96646 1.20285 0.89704 0.95885 0.88215 0.93462 1.22415 1.01514 1.00319 0.98064 1.42429 1.18678 1.39897 1.34787 1.19167 0.93199 1.13060 1.10344 0.91658 1.24480 0.98208 0.98753 0.98673 1.69501 1.37646 1.24451 1.25674 0.86320 0.84709 0.77249 0.78730 1.21943 1.21952 1.21216 1.45878 1.65757 1.14334 1.08593 1.18136 0.76413 0.86039 0.83345 1.90657 1.52453 1.15943 1.85761 1.19804 1.05738 0.94832 0.93677 1.21304 0.91128 0.92826 0.97964 1.20942 1.00481 1.00247 0.92541 1.21025 0.97930 0.93392 0.97588 1.19353 1.03402 0.94577 0.93985 1.20991 0.91502 0.98092 0.92161 1.62020 1.06091 1.56169 1.02278 1.22380 1.02095 0.97746 0.90168 1.22462 0.93993 0.95964 1.00340 1.20929 0.96284 0.99292 0.91220 0.92827 0.92394 0.92196 0.90832 0.91784 0.94615 0.92889 0.93625 0.78885 0.93523 0.75826 0.84765 0.86126 0.86768 0.90213 0.94159 0.95847 0.91502 0.91471 0.90486 0.91767 0.95706 0.86218 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.21 9.48 37.16 0.35 -1.86 16 2 C 0.15 2.44 2.57 -67.93 -0.17 2.26 16 3 H 0.08 1.53 7.58 -51.93 -0.39 1.14 16 4 C -0.13 -1.99 4.43 -26.73 -0.12 -2.11 16 5 C 0.17 3.11 2.89 -67.93 -0.20 2.91 16 6 H 0.05 0.95 8.08 -51.93 -0.42 0.53 16 7 C -0.16 -2.76 9.49 37.16 0.35 -2.41 16 8 N -0.71 -15.74 3.84 -53.42 -0.21 -15.95 16 9 C -0.23 -5.81 9.93 -15.06 -0.15 -5.96 16 10 H 0.07 1.73 7.83 -52.49 -0.41 1.32 16 11 C -0.01 -0.14 5.50 -17.43 -0.10 -0.23 16 12 N -0.92 -23.39 10.73 55.49 0.60 -22.79 16 13 Si 0.90 21.93 29.55 -169.99 -5.02 16.91 16 14 H -0.29 -7.39 7.11 56.52 0.40 -6.99 16 15 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 16 H -0.29 -6.99 7.11 56.52 0.40 -6.58 16 17 N -0.69 -12.67 3.75 -54.75 -0.21 -12.87 16 18 C 0.57 11.83 7.74 -12.33 -0.10 11.74 16 19 O -0.57 -12.97 16.01 5.32 0.09 -12.88 16 20 C -0.14 -2.72 5.87 -104.97 -0.62 -3.33 16 21 C -0.01 -0.24 7.84 -39.19 -0.31 -0.55 16 22 C -0.12 -2.15 10.03 -39.64 -0.40 -2.55 16 23 C -0.08 -1.30 9.69 -39.49 -0.38 -1.69 16 24 C -0.11 -1.85 4.88 -104.68 -0.51 -2.36 16 25 C 0.10 1.38 5.11 -4.98 -0.03 1.36 16 26 N -0.54 -6.95 5.01 -252.72 -1.27 -8.22 16 27 C 0.02 0.25 9.57 60.06 0.57 0.82 16 28 C 0.02 0.26 9.13 60.06 0.55 0.81 16 29 C -0.06 -1.07 7.50 -39.19 -0.29 -1.36 16 30 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 31 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 32 H 0.06 0.69 8.14 -51.92 -0.42 0.27 16 33 H 0.07 0.93 8.14 -51.93 -0.42 0.50 16 34 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 35 H 0.03 0.51 8.14 -51.93 -0.42 0.08 16 36 H 0.05 0.99 8.14 -51.93 -0.42 0.56 16 37 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 38 H 0.38 8.37 5.70 -40.82 -0.23 8.14 16 39 H 0.25 6.48 8.31 -40.82 -0.34 6.14 16 40 H 0.40 7.33 4.54 -40.82 -0.19 7.15 16 41 H 0.13 2.59 5.86 -52.49 -0.31 2.29 16 42 H 0.12 1.92 8.06 -52.49 -0.42 1.50 16 43 H 0.11 1.60 8.06 -52.48 -0.42 1.17 16 44 H 0.08 1.01 8.01 -51.93 -0.42 0.59 16 45 H 0.04 0.56 8.06 -51.92 -0.42 0.14 16 46 H 0.02 0.23 8.14 -51.93 -0.42 -0.20 16 47 H 0.07 0.59 8.12 -51.93 -0.42 0.17 16 48 H 0.07 0.62 8.12 -51.92 -0.42 0.19 16 49 H 0.08 1.10 6.16 -51.93 -0.32 0.78 16 50 H 0.06 0.69 8.12 -51.93 -0.42 0.27 16 51 H 0.02 0.30 8.14 -51.93 -0.42 -0.12 16 52 H 0.12 2.23 7.62 -52.49 -0.40 1.83 16 LS Contribution 411.55 15.07 6.20 6.20 Total: -1.00 -28.20 411.55 -10.33 -38.53 By element: Atomic # 1 Polarization: 24.56 SS G_CDS: -8.98 Total: 15.58 kcal Atomic # 6 Polarization: -2.98 SS G_CDS: -1.54 Total: -4.52 kcal Atomic # 7 Polarization: -58.74 SS G_CDS: -1.08 Total: -59.82 kcal Atomic # 8 Polarization: -12.97 SS G_CDS: 0.09 Total: -12.88 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -5.02 Total: 16.91 kcal Total LS contribution 6.20 Total: 6.20 kcal Total: -28.20 -10.33 -38.53 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001146581911.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.769 kcal (2) G-P(sol) polarization free energy of solvation -28.196 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.573 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.332 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.528 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.241 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds