Wall clock time and date at job start Tue Mar 31 2020 17:18:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08994 * 109.47678 * 2 1 4 4 C 1.53002 * 109.47189 * 239.99487 * 2 1 3 5 5 C 1.53003 * 109.47269 * 175.00147 * 4 2 1 6 6 H 1.09000 * 109.46953 * 305.00936 * 5 4 2 7 7 C 1.52996 * 109.47332 * 185.00423 * 5 4 2 8 8 N 1.46505 * 109.46807 * 65.00478 * 5 4 2 9 9 C 1.36931 * 119.99788 * 205.00000 * 8 5 4 10 10 H 1.08002 * 120.00438 * 0.02562 * 9 8 5 11 11 C 1.38817 * 119.99680 * 179.72358 * 9 8 5 12 12 N 1.31614 * 119.99888 * 0.27479 * 11 9 8 13 13 Si 1.86803 * 119.99862 * 180.27671 * 11 9 8 14 14 H 1.48498 * 109.47174 * 90.00121 * 13 11 9 15 15 H 1.48501 * 109.47062 * 210.00072 * 13 11 9 16 16 H 1.48504 * 109.46913 * 329.99871 * 13 11 9 17 17 N 1.46508 * 109.46657 * 120.00295 * 2 1 3 18 18 C 1.34771 * 119.99837 * 274.99636 * 17 2 1 19 19 O 1.21555 * 120.00130 * 0.02562 * 18 17 2 20 20 C 1.47849 * 120.00132 * 180.02562 * 18 17 2 21 21 C 1.39593 * 120.14031 * 359.72232 * 20 18 17 22 22 C 1.37938 * 119.84696 * 179.75101 * 21 20 18 23 23 C 1.38377 * 120.14762 * 0.52482 * 22 21 20 24 24 C 1.38343 * 120.29326 * 359.75116 * 23 22 21 25 25 C 1.50696 * 119.92715 * 179.97438 * 24 23 22 26 26 N 1.46895 * 109.47459 * 269.97529 * 25 24 23 27 27 C 1.46897 * 111.00444 * 170.00178 * 26 25 24 28 28 C 1.46900 * 111.00173 * 293.95815 * 26 25 24 29 29 C 1.37973 * 120.14327 * 359.97065 * 24 23 22 30 30 H 1.08998 * 109.47359 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.46944 * 300.00322 * 1 2 3 32 32 H 1.09010 * 109.46692 * 59.99697 * 1 2 3 33 33 H 1.09000 * 109.46766 * 55.00662 * 4 2 1 34 34 H 1.08992 * 109.47398 * 295.00756 * 4 2 1 35 35 H 1.08998 * 109.47019 * 59.99816 * 7 5 4 36 36 H 1.08998 * 109.47099 * 180.02562 * 7 5 4 37 37 H 1.09002 * 109.46807 * 300.00318 * 7 5 4 38 38 H 0.97000 * 119.99792 * 24.99795 * 8 5 4 39 39 H 0.97005 * 119.99715 * 179.97438 * 12 11 9 40 40 H 0.96999 * 120.00119 * 94.99915 * 17 2 1 41 41 H 1.07994 * 120.07566 * 0.02562 * 21 20 18 42 42 H 1.07998 * 119.92700 * 180.28020 * 22 21 20 43 43 H 1.08003 * 119.85510 * 179.76597 * 23 22 21 44 44 H 1.09007 * 109.47534 * 29.97821 * 25 24 23 45 45 H 1.09008 * 109.46967 * 149.97556 * 25 24 23 46 46 H 1.09002 * 109.47101 * 59.99614 * 27 26 25 47 47 H 1.09003 * 109.47337 * 180.02562 * 27 26 25 48 48 H 1.09009 * 109.46863 * 300.00488 * 27 26 25 49 49 H 1.08999 * 109.47103 * 59.99333 * 28 26 25 50 50 H 1.09001 * 109.47520 * 179.97438 * 28 26 25 51 51 H 1.08997 * 109.46841 * 299.99835 * 28 26 25 52 52 H 1.08001 * 120.07557 * 180.02562 * 29 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7214 -1.2492 5 6 3.5649 -0.6135 -1.3136 6 1 3.8571 0.4356 -1.2677 7 6 4.0645 -1.2252 -2.6239 8 7 4.1536 -1.3344 -0.1823 9 6 5.3943 -0.9859 0.2807 10 1 5.9386 -0.1792 -0.1877 11 6 5.9497 -1.6652 1.3564 12 7 5.2861 -2.6479 1.9276 13 14 7.6389 -1.1846 1.9930 14 1 7.4946 -0.1451 3.0435 15 1 8.3096 -2.3787 2.5670 16 1 8.4552 -0.6482 0.8744 17 7 2.0182 -0.6907 1.1962 18 6 2.1470 -0.0184 2.3572 19 8 1.8575 1.1609 2.4119 20 6 2.6402 -0.7153 3.5642 21 6 2.9679 -2.0709 3.5062 22 6 3.4325 -2.7138 4.6348 23 6 3.5635 -2.0206 5.8252 24 6 3.2350 -0.6783 5.8909 25 6 3.3803 0.0684 7.1917 26 7 2.1267 -0.0232 7.9517 27 6 2.3014 0.4849 9.3189 28 6 1.0398 0.6845 7.2620 29 6 2.7746 -0.0219 4.7680 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8900 32 1 -0.3633 0.5139 -0.8901 33 1 1.6055 -0.2618 -2.1369 34 1 1.7516 -1.7715 -1.2056 35 1 3.6264 -0.6888 -3.4656 36 1 5.1509 -1.1487 -2.6696 37 1 3.7722 -2.2743 -2.6698 38 1 3.6646 -2.0586 0.2387 39 1 5.6745 -3.1228 2.6790 40 1 2.2489 -1.6319 1.1527 41 1 2.8623 -2.6141 2.5788 42 1 3.6907 -3.7615 4.5902 43 1 3.9241 -2.5296 6.7069 44 1 4.1910 -0.3699 7.7738 45 1 3.6052 1.1152 6.9865 46 1 2.6119 1.5291 9.2815 47 1 1.3583 0.4050 9.8596 48 1 3.0640 -0.1027 9.8302 49 1 0.8852 0.2421 6.2779 50 1 0.1233 0.6005 7.8459 51 1 1.3046 1.7359 7.1500 52 1 2.5189 1.0260 4.8204 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001146581911.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:18:23 Heat of formation + Delta-G solvation = -9.478243 kcal Electronic energy + Delta-G solvation = -30472.482756 eV Core-core repulsion = 26664.595682 eV Total energy + Delta-G solvation = -3807.887074 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 333.216 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -41.19217 -39.83775 -38.28587 -37.72116 -35.75289 -34.11895 -32.95513 -32.09032 -31.37275 -30.13021 -28.49233 -27.61784 -27.56470 -25.51866 -24.97789 -23.39902 -22.42342 -21.95743 -21.65751 -20.73643 -19.06480 -18.38213 -17.45056 -16.79200 -16.67594 -16.42304 -16.31258 -16.12417 -15.82121 -15.55125 -15.38962 -15.19542 -14.93893 -14.55532 -14.31712 -14.19301 -13.65750 -13.56662 -13.34514 -13.26338 -13.21671 -13.14025 -12.89817 -12.86585 -12.78464 -12.65762 -12.57565 -12.47328 -12.29191 -12.26198 -12.13181 -11.79008 -11.67490 -11.55680 -11.39607 -10.85129 -10.75930 -9.93712 -9.65887 -9.57499 -9.27227 -8.73078 -7.79001 -4.98908 0.13086 0.60018 1.44468 1.49791 1.51490 2.05956 2.46593 2.63152 2.95759 3.30913 3.54910 3.76806 3.83522 3.94273 4.03572 4.10041 4.18744 4.25608 4.27862 4.38012 4.39625 4.45854 4.57063 4.57578 4.61779 4.68088 4.70111 4.77194 4.81752 4.84263 4.88011 4.92643 5.01185 5.02160 5.06298 5.09585 5.14629 5.16512 5.20795 5.36742 5.43020 5.58345 5.64005 5.65304 5.66170 5.74948 5.80450 5.98162 6.07937 6.17645 6.44293 6.75027 7.42634 7.53135 8.21810 8.50764 9.41070 Molecular weight = 333.22amu Principal moments of inertia in cm(-1) A = 0.011049 B = 0.004529 C = 0.003524 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2533.638216 B = 6180.240217 C = 7944.501610 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.144 3.856 3 H 0.054 0.946 4 C -0.120 4.120 5 C 0.162 3.838 6 H 0.025 0.975 7 C -0.153 4.153 8 N -0.718 5.718 9 C -0.235 4.235 10 H 0.049 0.951 11 C -0.038 4.038 12 N -0.921 5.921 13 Si 0.933 3.067 14 H -0.307 1.307 15 H -0.292 1.292 16 H -0.288 1.288 17 N -0.685 5.685 18 C 0.562 3.438 19 O -0.601 6.601 20 C -0.160 4.160 21 C -0.020 4.020 22 C -0.129 4.129 23 C -0.077 4.077 24 C -0.108 4.108 25 C 0.102 3.898 26 N -0.549 5.549 27 C 0.024 3.976 28 C 0.023 3.977 29 C -0.070 4.070 30 H 0.069 0.931 31 H 0.037 0.963 32 H 0.087 0.913 33 H 0.109 0.891 34 H 0.077 0.923 35 H 0.068 0.932 36 H 0.027 0.973 37 H 0.049 0.951 38 H 0.375 0.625 39 H 0.251 0.749 40 H 0.404 0.596 41 H 0.126 0.874 42 H 0.136 0.864 43 H 0.144 0.856 44 H 0.098 0.902 45 H 0.035 0.965 46 H 0.026 0.974 47 H 0.080 0.920 48 H 0.079 0.921 49 H 0.054 0.946 50 H 0.082 0.918 51 H 0.023 0.977 52 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.029 0.247 5.906 11.641 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.040 3.960 3 H 0.072 0.928 4 C -0.158 4.158 5 C 0.053 3.947 6 H 0.043 0.957 7 C -0.212 4.212 8 N -0.361 5.361 9 C -0.367 4.367 10 H 0.067 0.933 11 C -0.233 4.233 12 N -0.570 5.570 13 Si 0.766 3.234 14 H -0.235 1.235 15 H -0.219 1.219 16 H -0.214 1.214 17 N -0.336 5.336 18 C 0.351 3.649 19 O -0.485 6.485 20 C -0.163 4.163 21 C -0.039 4.039 22 C -0.147 4.147 23 C -0.095 4.095 24 C -0.109 4.109 25 C -0.025 4.025 26 N -0.273 5.273 27 C -0.124 4.124 28 C -0.125 4.125 29 C -0.090 4.090 30 H 0.088 0.912 31 H 0.056 0.944 32 H 0.106 0.894 33 H 0.127 0.873 34 H 0.096 0.904 35 H 0.086 0.914 36 H 0.047 0.953 37 H 0.068 0.932 38 H 0.210 0.790 39 H 0.061 0.939 40 H 0.243 0.757 41 H 0.144 0.856 42 H 0.154 0.846 43 H 0.162 0.838 44 H 0.116 0.884 45 H 0.053 0.947 46 H 0.045 0.955 47 H 0.099 0.901 48 H 0.097 0.903 49 H 0.072 0.928 50 H 0.101 0.899 51 H 0.041 0.959 52 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -10.200 0.637 5.941 11.821 hybrid contribution 1.767 0.755 0.261 1.939 sum -8.434 1.392 6.202 10.561 Atomic orbital electron populations 1.22106 0.93804 1.02756 1.02271 1.20969 0.94388 0.96220 0.84416 0.92795 1.22133 0.94914 1.01572 0.97160 1.20479 0.92095 0.94308 0.87810 0.95668 1.22259 1.00013 1.00861 0.98099 1.42435 1.17677 1.40119 1.35843 1.19176 0.94563 1.12540 1.10434 0.93331 1.24829 0.99652 0.99504 0.99313 1.69555 1.37583 1.24354 1.25497 0.85778 0.83432 0.76434 0.77747 1.23530 1.21856 1.21425 1.45923 1.64838 1.14230 1.08629 1.18445 0.76267 0.85825 0.84338 1.90619 1.54229 1.17242 1.86377 1.19925 1.07005 0.95492 0.93873 1.21241 0.91937 0.92395 0.98364 1.21183 0.99969 1.01067 0.92458 1.21360 0.96796 0.93211 0.98177 1.19664 1.01790 0.94950 0.94466 1.20990 0.92741 0.97537 0.91279 1.62018 1.05358 1.56640 1.03311 1.22465 1.03353 0.98038 0.88521 1.22424 0.94914 0.95592 0.99612 1.20974 0.97204 0.98987 0.91812 0.91204 0.94418 0.89442 0.87285 0.90391 0.91356 0.95329 0.93185 0.79049 0.93877 0.75724 0.85597 0.84622 0.83820 0.88417 0.94700 0.95548 0.90126 0.90271 0.92750 0.89927 0.95888 0.87315 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.89 9.48 71.98 0.68 -3.21 16 2 C 0.14 4.64 2.57 44.99 0.12 4.76 16 3 H 0.05 2.05 7.58 -2.39 -0.02 2.03 16 4 C -0.12 -3.31 4.43 30.60 0.14 -3.18 16 5 C 0.16 5.84 2.89 44.99 0.13 5.97 16 6 H 0.03 1.02 8.08 -2.39 -0.02 1.00 16 7 C -0.15 -4.91 9.49 71.98 0.68 -4.23 16 8 N -0.72 -31.78 3.84 -322.93 -1.24 -33.02 16 9 C -0.23 -12.25 9.93 84.04 0.83 -11.41 16 10 H 0.05 2.65 7.83 -2.91 -0.02 2.63 16 11 C -0.04 -1.97 5.50 84.86 0.47 -1.50 16 12 N -0.92 -46.62 10.73 21.65 0.23 -46.39 16 13 Si 0.93 45.41 29.55 68.60 2.03 47.44 16 14 H -0.31 -15.57 7.11 99.48 0.71 -14.86 16 15 H -0.29 -14.08 7.11 99.48 0.71 -13.38 16 16 H -0.29 -13.97 7.11 99.48 0.71 -13.27 16 17 N -0.69 -25.50 3.75 -445.40 -1.67 -27.17 16 18 C 0.56 24.22 7.74 86.79 0.67 24.89 16 19 O -0.60 -28.90 16.01 -3.89 -0.06 -28.96 16 20 C -0.16 -6.54 5.87 -20.09 -0.12 -6.66 16 21 C -0.02 -0.76 7.84 22.53 0.18 -0.58 16 22 C -0.13 -4.36 10.03 22.23 0.22 -4.14 16 23 C -0.08 -2.37 9.69 22.33 0.22 -2.16 16 24 C -0.11 -3.51 4.88 -19.90 -0.10 -3.60 16 25 C 0.10 2.69 5.11 85.56 0.44 3.13 16 26 N -0.55 -13.17 5.01 -953.46 -4.78 -17.94 16 27 C 0.02 0.42 9.57 127.69 1.22 1.64 16 28 C 0.02 0.56 9.13 127.69 1.17 1.73 16 29 C -0.07 -2.67 7.50 22.53 0.17 -2.50 16 30 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16 31 H 0.04 1.12 8.14 -2.39 -0.02 1.10 16 32 H 0.09 1.77 8.14 -2.38 -0.02 1.75 16 33 H 0.11 2.31 8.14 -2.39 -0.02 2.29 16 34 H 0.08 2.01 8.14 -2.39 -0.02 1.99 16 35 H 0.07 1.75 8.14 -2.39 -0.02 1.73 16 36 H 0.03 1.03 8.14 -2.39 -0.02 1.02 16 37 H 0.05 1.56 8.14 -2.39 -0.02 1.54 16 38 H 0.37 16.68 5.70 -92.71 -0.53 16.15 16 39 H 0.25 12.69 8.31 -92.70 -0.77 11.92 16 40 H 0.40 14.85 4.54 -92.71 -0.42 14.43 16 41 H 0.13 4.95 5.86 -2.91 -0.02 4.93 16 42 H 0.14 4.13 8.06 -2.91 -0.02 4.10 16 43 H 0.14 3.58 8.06 -2.91 -0.02 3.55 16 44 H 0.10 2.23 8.01 -2.38 -0.02 2.21 16 45 H 0.03 0.96 8.06 -2.38 -0.02 0.94 16 46 H 0.03 0.45 8.14 -2.39 -0.02 0.43 16 47 H 0.08 1.21 8.12 -2.39 -0.02 1.19 16 48 H 0.08 1.22 8.12 -2.38 -0.02 1.20 16 49 H 0.05 1.57 6.16 -2.39 -0.01 1.56 16 50 H 0.08 1.68 8.12 -2.39 -0.02 1.66 16 51 H 0.02 0.56 8.14 -2.39 -0.02 0.54 16 52 H 0.11 4.29 7.62 -2.91 -0.02 4.27 16 Total: -1.00 -62.46 411.55 1.57 -60.89 By element: Atomic # 1 Polarization: 46.27 SS G_CDS: -0.05 Total: 46.22 kcal Atomic # 6 Polarization: -8.17 SS G_CDS: 7.12 Total: -1.06 kcal Atomic # 7 Polarization: -117.07 SS G_CDS: -7.46 Total: -124.53 kcal Atomic # 8 Polarization: -28.90 SS G_CDS: -0.06 Total: -28.96 kcal Atomic # 14 Polarization: 45.41 SS G_CDS: 2.03 Total: 47.44 kcal Total: -62.46 1.57 -60.89 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001146581911.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.409 kcal (2) G-P(sol) polarization free energy of solvation -62.461 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.052 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.574 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.887 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.478 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds